Wall clock time and date at job start Fri Apr 10 2020 22:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50699 * 119.99796 * 2 1 4 4 C 1.53008 * 109.47002 * 124.99925 * 3 2 1 5 5 C 1.52991 * 109.47161 * 300.00186 * 4 3 2 6 6 C 1.53001 * 109.46729 * 60.00116 * 4 3 2 7 7 C 1.50697 * 109.47323 * 179.97438 * 4 3 2 8 8 O 1.21287 * 119.99593 * 1.74553 * 7 4 3 9 9 N 1.34768 * 120.00120 * 181.73907 * 7 4 3 10 10 C 1.46926 * 120.63333 * 355.05996 * 9 7 4 11 11 C 1.53191 * 108.77721 * 126.36161 * 10 9 7 12 12 C 1.53046 * 109.31294 * 54.63864 * 11 10 9 13 13 H 1.09009 * 109.45878 * 58.64845 * 12 11 10 14 14 C 1.52991 * 109.46281 * 178.62327 * 12 11 10 15 15 N 1.46496 * 109.47318 * 295.00341 * 14 12 11 16 16 C 1.36945 * 120.00304 * 180.02562 * 15 14 12 17 17 H 1.08000 * 119.99220 * 359.97438 * 16 15 14 18 18 C 1.38814 * 120.00104 * 179.97438 * 16 15 14 19 19 N 1.31615 * 119.99489 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00104 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47058 * 90.00254 * 20 18 16 22 22 H 1.48498 * 109.47225 * 210.00205 * 20 18 16 23 23 H 1.48499 * 109.47135 * 330.00486 * 20 18 16 24 24 C 1.53041 * 109.53375 * 298.63558 * 12 11 10 25 25 H 1.09005 * 109.49368 * 181.31481 * 24 12 11 26 26 C 1.53001 * 109.49468 * 301.37620 * 24 12 11 27 27 C 1.46930 * 120.63056 * 174.77509 * 9 7 4 28 28 H 1.08003 * 119.99931 * 179.97438 * 1 2 3 29 29 H 1.08001 * 119.99873 * 359.97438 * 1 2 3 30 30 H 1.08001 * 119.99873 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.47120 * 244.99634 * 3 2 1 32 32 H 1.08993 * 109.47416 * 5.00208 * 3 2 1 33 33 H 1.08999 * 109.47386 * 70.14490 * 5 4 3 34 34 H 1.09001 * 109.47124 * 190.14240 * 5 4 3 35 35 H 1.09004 * 109.47487 * 310.14201 * 5 4 3 36 36 H 1.09000 * 109.47714 * 47.23055 * 6 4 3 37 37 H 1.08998 * 109.46876 * 167.23425 * 6 4 3 38 38 H 1.09004 * 109.46990 * 287.23189 * 6 4 3 39 39 H 1.08994 * 109.58474 * 246.15449 * 10 9 7 40 40 H 1.08999 * 109.58239 * 6.57498 * 10 9 7 41 41 H 1.08999 * 109.49496 * 174.58617 * 11 10 9 42 42 H 1.08999 * 109.50159 * 294.68347 * 11 10 9 43 43 H 1.09005 * 109.47323 * 54.99957 * 14 12 11 44 44 H 1.08995 * 109.47194 * 174.99835 * 14 12 11 45 45 H 0.97001 * 120.00220 * 359.97438 * 15 14 12 46 46 H 0.97003 * 119.99695 * 179.97438 * 19 18 16 47 47 H 1.08993 * 109.46939 * 60.00486 * 26 24 12 48 48 H 1.08999 * 109.47058 * 180.02562 * 26 24 12 49 49 H 1.09000 * 109.46987 * 300.00341 * 26 24 12 50 50 H 1.09001 * 109.58785 * 353.42032 * 27 9 7 51 51 H 1.08994 * 109.59159 * 113.84811 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 6 2.2521 1.1962 2.4890 6 6 4.0245 0.1729 1.0559 7 6 3.7890 2.6379 1.1814 8 8 3.5482 3.4771 0.3395 9 7 4.7305 2.8724 2.1167 10 6 4.9585 1.9135 3.2063 11 6 6.4441 1.5407 3.2323 12 6 7.2844 2.8160 3.3314 13 1 7.0093 3.3629 4.2334 14 6 8.7676 2.4458 3.3922 15 7 9.0363 1.7074 4.6286 16 6 10.3046 1.2697 4.9029 17 1 11.1066 1.4686 4.2074 18 6 10.5594 0.5705 6.0747 19 7 11.7782 0.1494 6.3380 20 14 9.1723 0.2272 7.2778 21 1 8.5311 -1.0683 6.9375 22 1 9.7183 0.1619 8.6572 23 1 8.1648 1.3150 7.1952 24 6 7.0281 3.6943 2.1046 25 1 7.6443 4.5914 2.1644 26 6 7.3819 2.9153 0.8361 27 6 5.5529 4.0887 2.0626 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 2.6213 1.4026 -0.9314 32 1 1.3586 2.1316 0.0896 33 1 1.8548 0.1844 2.5703 34 1 2.9143 1.3953 3.3316 35 1 1.4294 1.9113 2.4965 36 1 4.4165 0.1382 0.0394 37 1 4.8460 0.3184 1.7573 38 1 3.5159 -0.7644 1.2814 39 1 4.6789 2.3674 4.1569 40 1 4.3601 1.0184 3.0364 41 1 6.6446 0.9050 4.0948 42 1 6.7011 1.0058 2.3180 43 1 9.0221 1.8231 2.5346 44 1 9.3698 3.3541 3.3732 45 1 8.3161 1.5291 5.2534 46 1 11.9564 -0.3388 7.1570 47 1 6.7648 2.0189 0.7762 48 1 7.1997 3.5413 -0.0374 49 1 8.4338 2.6310 0.8659 50 1 5.3467 4.6285 1.1383 51 1 5.3229 4.7238 2.9180 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185225300.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:13:59 Heat of formation + Delta-G solvation = -1.885956 kcal Electronic energy + Delta-G solvation = -27363.748743 eV Core-core repulsion = 23878.069088 eV Total energy + Delta-G solvation = -3485.679656 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.13509 -38.58825 -36.80780 -35.23122 -33.90174 -32.65898 -31.72745 -30.72370 -27.71426 -27.51828 -27.09494 -26.63335 -24.04233 -23.05330 -22.56442 -21.12814 -20.09816 -19.17822 -18.46696 -17.48461 -16.70759 -16.31731 -15.65477 -15.45946 -15.14107 -14.50020 -14.41128 -14.33557 -14.23678 -13.98243 -13.68055 -13.35495 -13.03907 -12.90440 -12.75840 -12.54274 -12.45638 -12.32870 -12.15753 -11.86106 -11.65659 -11.51035 -11.42800 -11.21947 -11.19283 -11.08516 -10.94793 -10.82385 -10.43899 -10.27566 -10.17275 -10.06701 -9.65785 -9.59903 -9.48489 -8.90380 -8.64334 -7.23657 -5.78472 -3.13626 2.00456 2.54336 2.91716 3.33629 3.35149 3.42305 4.17297 4.43483 4.56479 4.59638 4.68203 4.75854 4.84019 4.88530 4.95857 4.98432 4.99761 5.14510 5.27380 5.32178 5.41296 5.43702 5.47808 5.51838 5.54474 5.60037 5.61762 5.66684 5.69511 5.74571 5.75631 5.81672 5.84968 5.89786 5.95202 6.00109 6.11647 6.17639 6.28371 6.29947 6.36566 6.38167 6.51063 6.53752 6.69189 6.81503 7.33876 7.98502 8.09292 8.40759 9.20064 9.92305 10.12322 11.40219 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.018961 B = 0.003543 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.333722 B = 7902.112974 C = 8728.287703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.147 4.147 3 C -0.069 4.069 4 C -0.075 4.075 5 C -0.156 4.156 6 C -0.161 4.161 7 C 0.526 3.474 8 O -0.546 6.546 9 N -0.601 5.601 10 C 0.082 3.918 11 C -0.132 4.132 12 C -0.092 4.092 13 H 0.070 0.930 14 C 0.163 3.837 15 N -0.755 5.755 16 C -0.242 4.242 17 H 0.089 0.911 18 C 0.003 3.997 19 N -0.935 5.935 20 Si 0.884 3.116 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.277 1.277 24 C -0.098 4.098 25 H 0.083 0.917 26 C -0.146 4.146 27 C 0.117 3.883 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.108 0.892 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.030 0.970 44 H 0.025 0.975 45 H 0.360 0.640 46 H 0.259 0.741 47 H 0.055 0.945 48 H 0.048 0.952 49 H 0.063 0.937 50 H 0.090 0.910 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.618 2.172 -10.768 24.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.165 4.165 3 C -0.106 4.106 4 C -0.078 4.078 5 C -0.213 4.213 6 C -0.218 4.218 7 C 0.314 3.686 8 O -0.424 6.424 9 N -0.334 5.334 10 C -0.040 4.040 11 C -0.170 4.170 12 C -0.111 4.111 13 H 0.089 0.911 14 C 0.036 3.964 15 N -0.401 5.401 16 C -0.372 4.372 17 H 0.107 0.893 18 C -0.193 4.193 19 N -0.583 5.583 20 Si 0.714 3.286 21 H -0.211 1.211 22 H -0.218 1.218 23 H -0.204 1.204 24 C -0.117 4.117 25 H 0.101 0.899 26 C -0.203 4.203 27 C -0.006 4.006 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.128 0.872 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.125 0.875 41 H 0.099 0.901 42 H 0.092 0.908 43 H 0.048 0.952 44 H 0.043 0.957 45 H 0.192 0.808 46 H 0.069 0.931 47 H 0.074 0.926 48 H 0.067 0.933 49 H 0.082 0.918 50 H 0.108 0.892 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -21.491 2.591 -11.235 24.389 hybrid contribution -0.758 -0.354 1.104 1.385 sum -22.249 2.237 -10.131 24.549 Atomic orbital electron populations 1.23840 0.95941 1.01718 1.01886 1.22960 0.95945 0.98396 0.99168 1.20608 0.97389 0.95421 0.97209 1.20685 0.95993 0.93414 0.97736 1.22265 1.00421 1.03084 0.95571 1.22317 0.99102 0.96889 1.03503 1.20512 0.79438 0.88334 0.80295 1.90663 1.66100 1.47271 1.38363 1.47998 1.35838 1.22500 1.27060 1.22481 0.98133 0.93592 0.89793 1.22054 0.92923 0.98463 1.03603 1.21351 0.96896 0.95528 0.97326 0.91115 1.20693 0.91281 0.94860 0.89611 1.42736 1.08300 1.67784 1.21295 1.19067 0.85764 1.28222 1.04165 0.89309 1.24677 0.96078 1.00552 0.97963 1.69702 1.18681 1.43307 1.26633 0.86555 0.82395 0.78076 0.81560 1.21058 1.21759 1.20370 1.21386 0.95218 0.99364 0.95768 0.89860 1.21877 1.02056 1.00172 0.96215 1.21584 0.89769 0.86267 1.02950 0.88605 0.88705 0.87218 0.90345 0.90873 0.91125 0.90740 0.92117 0.91844 0.90261 0.91172 0.91298 0.87486 0.90126 0.90757 0.95218 0.95669 0.80760 0.93078 0.92591 0.93264 0.91800 0.89188 0.91728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.43 14.32 29.01 0.42 -1.01 16 2 C -0.15 -1.14 7.86 -36.03 -0.28 -1.43 16 3 C -0.07 -0.65 3.96 -27.88 -0.11 -0.76 16 4 C -0.08 -0.71 0.52 -155.66 -0.08 -0.79 16 5 C -0.16 -1.26 7.64 37.15 0.28 -0.98 16 6 C -0.16 -1.38 7.49 37.16 0.28 -1.10 16 7 C 0.53 6.45 6.48 -10.99 -0.07 6.37 16 8 O -0.55 -8.46 15.42 5.55 0.09 -8.38 16 9 N -0.60 -6.82 2.41 -173.03 -0.42 -7.23 16 10 C 0.08 0.84 3.92 -3.71 -0.01 0.83 16 11 C -0.13 -1.67 4.58 -26.61 -0.12 -1.80 16 12 C -0.09 -1.28 1.96 -90.58 -0.18 -1.46 16 13 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 14 C 0.16 2.98 5.18 -4.05 -0.02 2.96 16 15 N -0.76 -17.25 5.12 -59.91 -0.31 -17.56 16 16 C -0.24 -6.75 10.47 -15.05 -0.16 -6.91 16 17 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 18 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 19 N -0.94 -29.19 13.97 55.49 0.78 -28.41 16 20 Si 0.88 21.56 27.74 -169.99 -4.71 16.84 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.28 -6.30 6.52 56.52 0.37 -5.93 16 24 C -0.10 -1.18 2.71 -90.72 -0.25 -1.42 16 25 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 26 C -0.15 -1.79 8.38 37.16 0.31 -1.48 16 27 C 0.12 1.35 5.77 -3.93 -0.02 1.33 16 28 H 0.10 0.59 8.06 -52.48 -0.42 0.16 16 29 H 0.09 0.68 7.84 -52.49 -0.41 0.26 16 30 H 0.11 0.76 7.12 -52.49 -0.37 0.39 16 31 H 0.08 0.82 8.12 -51.93 -0.42 0.39 16 32 H 0.07 0.75 7.73 -51.93 -0.40 0.35 16 33 H 0.07 0.50 7.44 -51.93 -0.39 0.11 16 34 H 0.07 0.58 4.74 -51.93 -0.25 0.34 16 35 H 0.06 0.51 8.11 -51.93 -0.42 0.09 16 36 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 37 H 0.08 0.72 3.88 -51.93 -0.20 0.52 16 38 H 0.07 0.49 7.04 -51.93 -0.37 0.13 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.11 0.94 2.87 -51.93 -0.15 0.79 16 41 H 0.08 1.13 7.15 -51.93 -0.37 0.76 16 42 H 0.07 0.95 5.58 -51.93 -0.29 0.66 16 43 H 0.03 0.56 6.74 -51.93 -0.35 0.21 16 44 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.36 7.92 4.71 -40.82 -0.19 7.73 16 46 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 47 H 0.06 0.70 5.97 -51.93 -0.31 0.39 16 48 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 49 H 0.06 0.82 6.58 -51.93 -0.34 0.48 16 50 H 0.09 1.13 7.04 -51.93 -0.37 0.76 16 51 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 372.17 15.07 5.61 5.61 Total: -1.00 -32.18 372.17 -7.65 -39.83 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -8.57 Total: 6.95 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: -0.11 Total: -7.66 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: 0.05 Total: -53.20 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.09 Total: -8.38 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.71 Total: 16.84 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.18 -7.65 -39.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185225300.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.946 kcal (2) G-P(sol) polarization free energy of solvation -32.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds