Wall clock time and date at job start Fri Apr 10 2020 22:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.49620 * 2 1 4 4 C 1.53622 * 109.66118 * 239.90646 * 2 1 3 5 5 N 1.46920 * 108.54784 * 294.85061 * 4 2 1 6 6 C 1.34773 * 120.63071 * 126.36615 * 5 4 2 7 7 O 1.21280 * 120.00441 * 359.72561 * 6 5 4 8 8 C 1.50702 * 120.00339 * 179.72074 * 6 5 4 9 9 C 1.52992 * 109.47412 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.47033 * 180.02562 * 9 8 6 11 11 C 1.53006 * 115.55094 * 325.58173 * 10 9 8 12 12 C 1.52998 * 117.50299 * 111.25218 * 10 9 8 13 13 C 1.52999 * 117.50002 * 179.91428 * 10 9 8 14 14 C 1.46927 * 118.73990 * 306.09635 * 5 4 2 15 15 C 1.53190 * 108.77472 * 53.85531 * 14 5 4 16 16 C 1.53038 * 109.31390 * 305.36789 * 15 14 5 17 17 H 1.08996 * 109.46345 * 301.34006 * 16 15 14 18 18 C 1.53004 * 109.46170 * 181.38567 * 16 15 14 19 19 N 1.46502 * 109.47083 * 64.99983 * 18 16 15 20 20 C 1.36937 * 119.99952 * 180.02562 * 19 18 16 21 21 H 1.07997 * 120.00258 * 359.97438 * 20 19 18 22 22 C 1.38814 * 119.99829 * 179.97438 * 20 19 18 23 23 N 1.31619 * 120.00214 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99792 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47135 * 60.00282 * 24 22 20 26 26 H 1.48497 * 109.46808 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47470 * 299.99960 * 24 22 20 28 28 H 1.08999 * 109.47261 * 299.94102 * 1 2 3 29 29 H 1.09008 * 109.47293 * 59.94453 * 1 2 3 30 30 H 1.09001 * 109.47508 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.73829 * 175.10977 * 4 2 1 32 32 H 1.09000 * 109.66147 * 54.54619 * 4 2 1 33 33 H 1.09008 * 109.46681 * 59.99705 * 8 6 5 34 34 H 1.09002 * 109.47041 * 300.00414 * 8 6 5 35 35 H 1.08997 * 109.47346 * 60.00617 * 9 8 6 36 36 H 1.08993 * 109.47130 * 300.00000 * 9 8 6 37 37 H 1.09001 * 109.47002 * 34.41649 * 11 10 9 38 38 H 1.08993 * 109.46955 * 154.42086 * 11 10 9 39 39 H 1.09000 * 109.47050 * 274.41915 * 11 10 9 40 40 H 1.08992 * 117.50074 * 215.00275 * 12 10 9 41 41 H 1.09001 * 117.49625 * 0.02664 * 12 10 9 42 42 H 1.09006 * 117.49693 * 359.97438 * 13 10 9 43 43 H 1.08998 * 117.50050 * 144.96785 * 13 10 9 44 44 H 1.09003 * 109.59015 * 173.64600 * 14 5 4 45 45 H 1.09003 * 109.58407 * 294.07112 * 14 5 4 46 46 H 1.09000 * 109.49924 * 65.32250 * 15 14 5 47 47 H 1.09002 * 109.49980 * 185.38590 * 15 14 5 48 48 H 1.08998 * 109.47514 * 184.99865 * 18 16 15 49 49 H 1.09003 * 109.46881 * 305.00552 * 18 16 15 50 50 H 0.97004 * 120.00022 * 359.97438 * 19 18 16 51 51 H 0.96994 * 119.99993 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0468 -0.7254 -1.2517 5 7 1.6528 -2.1383 -1.1691 6 6 0.9766 -2.7227 -2.1779 7 8 0.6833 -2.0802 -3.1637 8 6 0.5850 -4.1748 -2.0810 9 6 -0.1662 -4.5861 -3.3487 10 6 -0.5643 -6.0601 -3.2500 11 6 0.4273 -6.9637 -2.5142 12 6 -2.0533 -6.3818 -3.1072 13 6 -1.3318 -6.6650 -4.4273 14 6 2.0152 -2.9038 0.0315 15 6 1.5036 -2.1556 1.2664 16 6 2.0407 -0.7227 1.2486 17 1 3.1304 -0.7434 1.2360 18 6 1.5599 0.0176 2.4984 19 7 2.1472 -0.6019 3.6891 20 6 1.8579 -0.1059 4.9322 21 1 1.1971 0.7421 5.0350 22 6 2.4140 -0.6932 6.0604 23 7 3.2189 -1.7271 5.9353 24 14 2.0199 -0.0161 7.7563 25 1 0.5563 -0.0975 7.9939 26 1 2.7331 -0.8141 8.7857 27 1 2.4565 1.4009 7.8373 28 1 -0.3634 0.5129 0.8905 29 1 -0.3634 0.5147 -0.8895 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1333 -0.6511 -1.2979 32 1 1.6096 -0.2756 -2.1430 33 1 -0.0586 -4.3203 -1.2133 34 1 1.4810 -4.7865 -1.9754 35 1 0.4778 -4.4407 -4.2160 36 1 -1.0621 -3.9745 -3.4547 37 1 0.8962 -6.4048 -1.7043 38 1 -0.1008 -7.8242 -2.1037 39 1 1.1930 -7.3056 -3.2106 40 1 -2.3264 -7.2370 -2.4891 41 1 -2.7493 -5.5433 -3.0840 42 1 -1.5536 -6.0126 -5.2719 43 1 -1.1301 -7.7064 -4.6779 44 1 1.5571 -3.8919 -0.0129 45 1 3.0992 -3.0036 0.0878 46 1 0.4138 -2.1358 1.2542 47 1 1.8481 -2.6625 2.1677 48 1 1.8673 1.0618 2.4431 49 1 0.4730 -0.0386 2.5583 50 1 2.7404 -1.3638 3.5968 51 1 3.6077 -2.1372 6.7236 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185433998.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:14:26 Heat of formation + Delta-G solvation = -19.949054 kcal Electronic energy + Delta-G solvation = -26319.007023 eV Core-core repulsion = 22832.544093 eV Total energy + Delta-G solvation = -3486.462930 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.47484 -38.78062 -37.85596 -34.93709 -33.51848 -32.48394 -31.58584 -30.31345 -28.55920 -27.12886 -26.90493 -24.69796 -23.52617 -22.95703 -22.67447 -21.36385 -19.81047 -18.95091 -18.27407 -17.39578 -16.87263 -15.94149 -15.80694 -15.47342 -14.98346 -14.79205 -14.36846 -14.25585 -13.91744 -13.71197 -13.58847 -13.22441 -13.08482 -12.86527 -12.55530 -12.52534 -12.38532 -12.29863 -12.12578 -11.75606 -11.56145 -11.39922 -11.33023 -11.19590 -11.04051 -10.91629 -10.75852 -10.37076 -10.36214 -10.21602 -10.15664 -9.98831 -9.83367 -9.65244 -9.63377 -8.86102 -8.54177 -6.91209 -5.77422 -3.05196 2.63768 3.00123 3.43423 3.47929 3.48406 3.48759 4.29030 4.45022 4.56420 4.58410 4.66040 4.79303 4.89089 4.95454 5.02709 5.07005 5.11495 5.17150 5.25815 5.35037 5.38843 5.48273 5.50606 5.54178 5.55969 5.63872 5.64590 5.74589 5.79080 5.81170 5.83681 5.87961 5.87993 5.91456 5.97240 6.06833 6.09653 6.12669 6.23568 6.30525 6.38856 6.47666 6.52689 6.68027 6.82423 6.94906 7.43305 7.69366 8.18419 8.42229 9.53239 10.11723 10.46366 11.45569 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.018072 B = 0.002798 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.961808 B =10005.310056 C =10910.970701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.080 0.920 4 C 0.116 3.884 5 N -0.606 5.606 6 C 0.514 3.486 7 O -0.551 6.551 8 C -0.140 4.140 9 C -0.064 4.064 10 C -0.129 4.129 11 C -0.123 4.123 12 C -0.176 4.176 13 C -0.177 4.177 14 C 0.105 3.895 15 C -0.128 4.128 16 C -0.088 4.088 17 H 0.071 0.929 18 C 0.158 3.842 19 N -0.732 5.732 20 C -0.238 4.238 21 H 0.068 0.932 22 C -0.014 4.014 23 N -0.935 5.935 24 Si 0.906 3.094 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 H 0.061 0.939 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.082 0.918 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.087 0.913 48 H 0.017 0.983 49 H 0.021 0.979 50 H 0.383 0.617 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.429 -8.387 -19.439 21.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 H 0.098 0.902 4 C -0.006 4.006 5 N -0.339 5.339 6 C 0.302 3.698 7 O -0.429 6.429 8 C -0.180 4.180 9 C -0.102 4.102 10 C -0.129 4.129 11 C -0.180 4.180 12 C -0.213 4.213 13 C -0.214 4.214 14 C -0.018 4.018 15 C -0.166 4.166 16 C -0.107 4.107 17 H 0.089 0.911 18 C 0.031 3.969 19 N -0.376 5.376 20 C -0.369 4.369 21 H 0.086 0.914 22 C -0.210 4.210 23 N -0.584 5.584 24 Si 0.737 3.263 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.107 0.893 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.100 0.900 45 H 0.088 0.912 46 H 0.086 0.914 47 H 0.106 0.894 48 H 0.035 0.965 49 H 0.039 0.961 50 H 0.217 0.783 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.644 -7.950 -19.816 22.085 hybrid contribution 0.040 0.082 1.162 1.166 sum -5.604 -7.868 -18.653 21.006 Atomic orbital electron populations 1.21841 0.94943 1.01897 1.01384 1.21538 0.96587 0.99414 0.94228 0.90186 1.21747 0.99212 0.80552 0.99114 1.48142 1.55877 1.11675 1.18228 1.20712 0.77163 0.89613 0.82286 1.90663 1.55225 1.65723 1.31314 1.21794 1.02314 0.92979 1.00865 1.20839 1.00614 0.91869 0.96839 1.21546 0.93342 0.95908 1.02067 1.21495 0.98182 0.98393 0.99947 1.23189 0.94458 1.03326 1.00311 1.23029 1.04575 1.01555 0.92198 1.21882 1.00512 0.94965 0.84407 1.21969 1.01361 0.96071 0.97175 1.21295 1.00221 0.94685 0.94498 0.91091 1.20716 0.95886 0.94651 0.85679 1.42374 1.56758 1.37639 1.00841 1.19186 1.22994 1.10854 0.83876 0.91361 1.24716 1.00108 0.98398 0.97781 1.69636 1.35664 1.24430 1.28656 0.86278 0.77638 0.78073 0.84274 1.21321 1.21705 1.21317 0.91997 0.93402 0.92657 0.91678 0.89280 0.88691 0.88544 0.90950 0.91082 0.91302 0.92462 0.92218 0.88891 0.88827 0.88848 0.88923 0.89965 0.91165 0.91382 0.89430 0.96537 0.96109 0.78317 0.93508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.39 37.16 0.31 -1.58 16 2 C -0.10 -1.28 2.72 -90.28 -0.25 -1.52 16 3 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 4 C 0.12 1.44 5.87 -3.49 -0.02 1.42 16 5 N -0.61 -7.31 2.40 -172.51 -0.41 -7.73 16 6 C 0.51 6.50 7.70 -10.99 -0.08 6.41 16 7 O -0.55 -8.76 15.39 5.56 0.09 -8.67 16 8 C -0.14 -1.32 3.05 -27.89 -0.09 -1.40 16 9 C -0.06 -0.61 4.69 -26.73 -0.13 -0.74 16 10 C -0.13 -1.05 2.46 -154.50 -0.38 -1.43 16 11 C -0.12 -0.88 9.49 37.16 0.35 -0.53 16 12 C -0.18 -1.37 9.82 -26.69 -0.26 -1.64 16 13 C -0.18 -1.34 9.97 -26.69 -0.27 -1.61 16 14 C 0.10 1.17 6.34 -3.71 -0.02 1.15 16 15 C -0.13 -1.79 4.91 -26.61 -0.13 -1.92 16 16 C -0.09 -1.34 1.96 -90.58 -0.18 -1.51 16 17 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 18 C 0.16 3.08 5.18 -4.04 -0.02 3.06 16 19 N -0.73 -17.97 5.32 -59.91 -0.32 -18.29 16 20 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 21 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 22 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 23 N -0.93 -27.76 13.06 55.49 0.72 -27.04 16 24 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 28 H 0.06 0.85 6.58 -51.93 -0.34 0.51 16 29 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 30 H 0.05 0.76 5.97 -51.93 -0.31 0.45 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.09 1.18 7.00 -51.93 -0.36 0.82 16 33 H 0.09 0.83 7.69 -51.92 -0.40 0.43 16 34 H 0.10 0.76 6.25 -51.93 -0.32 0.44 16 35 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 36 H 0.07 0.76 7.86 -51.93 -0.41 0.35 16 37 H 0.07 0.46 5.59 -51.93 -0.29 0.17 16 38 H 0.06 0.38 7.90 -51.93 -0.41 -0.03 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.09 0.66 8.05 -51.93 -0.42 0.24 16 41 H 0.09 0.74 8.05 -51.93 -0.42 0.32 16 42 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.08 0.75 5.93 -51.93 -0.31 0.44 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.07 0.98 6.34 -51.93 -0.33 0.65 16 47 H 0.09 1.42 7.15 -51.93 -0.37 1.05 16 48 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 49 H 0.02 0.42 6.74 -51.93 -0.35 0.07 16 50 H 0.38 9.75 6.85 -40.82 -0.28 9.47 16 51 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 386.57 15.07 5.83 5.83 Total: -1.00 -31.31 386.57 -9.62 -40.93 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -9.09 Total: 6.82 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: -1.40 Total: -9.09 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: -0.01 Total: -53.06 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.09 Total: -8.67 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.31 -9.62 -40.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185433998.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.985 kcal (2) G-P(sol) polarization free energy of solvation -31.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds