Wall clock time and date at job start Fri Apr 10 2020 22:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50693 * 119.99889 * 2 1 4 4 C 1.31001 * 119.99753 * 180.02562 * 2 1 3 5 5 C 1.50691 * 120.00430 * 5.27355 * 4 2 1 6 6 C 1.53000 * 109.47687 * 125.12881 * 5 4 2 7 7 C 1.52992 * 109.47438 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.47208 * 55.00254 * 7 6 5 9 9 C 1.53003 * 109.47584 * 295.00439 * 7 6 5 10 10 C 1.52999 * 109.47353 * 175.00168 * 7 6 5 11 11 C 1.50700 * 109.47301 * 185.00596 * 10 7 6 12 12 O 1.21282 * 119.99925 * 359.97438 * 11 10 7 13 13 N 1.34777 * 119.99920 * 180.02562 * 11 10 7 14 14 C 1.47424 * 125.64901 * 0.02562 * 13 11 10 15 15 C 1.54905 * 104.83436 * 155.84508 * 14 13 11 16 16 C 1.55165 * 101.58239 * 37.00704 * 15 14 13 17 17 H 1.08999 * 110.71767 * 83.04020 * 16 15 14 18 18 N 1.46497 * 110.72178 * 206.13671 * 16 15 14 19 19 C 1.36929 * 120.00192 * 273.54733 * 18 16 15 20 20 H 1.08003 * 120.00025 * 0.28029 * 19 18 16 21 21 C 1.38810 * 120.00317 * 179.97438 * 19 18 16 22 22 N 1.31627 * 119.99974 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00206 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46970 * 60.00749 * 23 21 19 25 25 H 1.48507 * 109.47018 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47264 * 300.00098 * 23 21 19 27 27 C 1.47023 * 125.64971 * 179.97438 * 13 11 10 28 28 H 1.09002 * 109.47101 * 235.47632 * 1 2 3 29 29 H 1.08999 * 109.47482 * 355.47667 * 1 2 3 30 30 H 1.09003 * 109.47591 * 115.47852 * 1 2 3 31 31 H 1.09009 * 109.47409 * 270.00057 * 3 2 1 32 32 H 1.08999 * 109.47648 * 29.99959 * 3 2 1 33 33 H 1.08995 * 109.47479 * 150.00445 * 3 2 1 34 34 H 1.08003 * 119.99242 * 185.26726 * 4 2 1 35 35 H 1.08997 * 109.47409 * 5.12749 * 5 4 2 36 36 H 1.09006 * 109.47222 * 245.13359 * 5 4 2 37 37 H 1.09001 * 109.46714 * 60.00249 * 6 5 4 38 38 H 1.08997 * 109.46966 * 300.00542 * 6 5 4 39 39 H 1.09000 * 109.46697 * 300.00128 * 9 7 6 40 40 H 1.08999 * 109.47415 * 59.99487 * 9 7 6 41 41 H 1.09001 * 109.47428 * 179.97438 * 9 7 6 42 42 H 1.08995 * 109.47282 * 65.00108 * 10 7 6 43 43 H 1.09006 * 109.46999 * 305.00395 * 10 7 6 44 44 H 1.08996 * 110.36644 * 37.00112 * 14 13 11 45 45 H 1.09002 * 110.36653 * 274.68010 * 14 13 11 46 46 H 1.09001 * 111.00298 * 278.93733 * 15 14 13 47 47 H 1.08993 * 111.04433 * 155.09717 * 15 14 13 48 48 H 0.96997 * 119.99617 * 93.54573 * 18 16 15 49 49 H 0.96990 * 119.99815 * 179.97438 * 22 21 19 50 50 H 1.09003 * 109.88211 * 61.66843 * 27 13 11 51 51 H 1.09002 * 109.88014 * 300.50573 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1619 -1.1345 -0.0005 5 6 1.4133 -2.4368 -0.1210 6 6 1.9711 -3.2388 -1.2986 7 6 1.2114 -4.5611 -1.4205 8 1 0.1429 -4.3605 -1.4987 9 6 1.4798 -5.4196 -0.1828 10 6 1.6830 -5.3069 -2.6704 11 6 0.8504 -6.5489 -2.8585 12 8 -0.0329 -6.8119 -2.0701 13 7 1.0880 -7.3678 -3.9021 14 6 2.1261 -7.1705 -4.9302 15 6 2.4095 -8.5887 -5.4850 16 6 0.9915 -9.2184 -5.4695 17 1 0.4332 -8.9335 -6.3612 18 7 1.0731 -10.6767 -5.3552 19 6 1.2119 -11.4449 -6.4802 20 1 1.2658 -10.9754 -7.4514 21 6 1.2898 -12.8265 -6.3720 22 7 1.2298 -13.3984 -5.1879 23 14 1.4785 -13.8745 -7.9068 24 1 2.7302 -13.4989 -8.6118 25 1 1.5369 -15.3080 -7.5233 26 1 0.3177 -13.6500 -8.8053 27 6 0.3557 -8.6066 -4.2034 28 1 -0.3633 -0.5824 0.8467 29 1 -0.3634 1.0244 0.0810 30 1 -0.3634 -0.4421 -0.9277 31 1 2.4421 1.6198 -1.0277 32 1 1.6714 2.0648 0.5138 33 1 3.2128 1.1748 0.5137 34 1 3.2386 -1.1364 0.0854 35 1 0.3556 -2.2337 -0.2884 36 1 1.5320 -3.0106 0.7981 37 1 3.0288 -3.4419 -1.1312 38 1 1.8523 -2.6650 -2.2176 39 1 2.5483 -5.6203 -0.1046 40 1 1.1438 -4.8884 0.7078 41 1 0.9382 -6.3616 -0.2694 42 1 2.7302 -5.5857 -2.5537 43 1 1.5739 -4.6610 -3.5417 44 1 3.0274 -6.7507 -4.4835 45 1 1.7562 -6.5200 -5.7228 46 1 3.0873 -9.1362 -4.8301 47 1 2.8043 -8.5403 -6.4998 48 1 1.0289 -11.0980 -4.4827 49 1 1.2838 -14.3638 -5.1124 50 1 -0.6945 -8.3807 -4.3883 51 1 0.4460 -9.3027 -3.3696 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185842394.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:14:34 Heat of formation + Delta-G solvation = -36.685662 kcal Electronic energy + Delta-G solvation = -25049.068365 eV Core-core repulsion = 21561.879680 eV Total energy + Delta-G solvation = -3487.188684 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.96116 -38.03950 -37.27712 -35.59450 -34.12514 -31.71956 -31.19477 -29.54220 -28.60829 -28.13901 -27.00132 -26.62808 -23.90045 -23.08413 -22.49793 -20.32410 -19.94657 -18.91797 -18.10084 -17.38635 -16.85880 -15.98342 -15.74949 -15.51664 -14.84278 -14.75253 -14.42021 -14.30946 -14.16056 -13.53577 -13.39707 -13.28918 -13.01124 -12.77535 -12.74430 -12.63835 -12.32059 -12.19600 -12.06733 -11.82780 -11.81947 -11.65142 -11.37576 -11.18083 -11.15556 -10.90857 -10.83241 -10.71377 -10.70664 -10.65105 -10.35422 -10.11424 -9.76898 -9.50416 -8.97213 -8.91970 -8.36323 -7.05423 -5.82855 -3.13683 1.88107 2.83472 3.19908 3.40597 3.45308 3.46407 4.40508 4.53716 4.60119 4.64654 4.69183 4.75414 4.96589 5.03128 5.05893 5.14346 5.18821 5.28219 5.29441 5.32925 5.41730 5.45034 5.47161 5.53031 5.54654 5.56905 5.58841 5.61611 5.63857 5.69833 5.70163 5.76632 5.94146 5.95543 5.97286 6.05919 6.14111 6.25743 6.29358 6.38072 6.39946 6.46711 6.59041 6.61481 6.65459 6.90269 7.63536 7.78206 8.34204 8.39107 9.45804 10.00329 10.35038 11.39256 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.041993 B = 0.001930 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.613669 B =14506.054761 C =14749.753760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.141 4.141 3 C -0.116 4.116 4 C -0.161 4.161 5 C -0.096 4.096 6 C -0.107 4.107 7 C -0.075 4.075 8 H 0.077 0.923 9 C -0.155 4.155 10 C -0.132 4.132 11 C 0.524 3.476 12 O -0.544 6.544 13 N -0.615 5.615 14 C 0.099 3.901 15 C -0.155 4.155 16 C 0.171 3.829 17 H 0.063 0.937 18 N -0.716 5.716 19 C -0.246 4.246 20 H 0.072 0.928 21 C -0.010 4.010 22 N -0.930 5.930 23 Si 0.910 3.090 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.285 1.285 27 C 0.101 3.899 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.106 0.894 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.047 0.953 40 H 0.052 0.948 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.068 0.932 45 H 0.065 0.935 46 H 0.075 0.925 47 H 0.075 0.925 48 H 0.386 0.614 49 H 0.257 0.743 50 H 0.064 0.936 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.178 26.869 8.258 28.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.141 4.141 3 C -0.173 4.173 4 C -0.179 4.179 5 C -0.133 4.133 6 C -0.145 4.145 7 C -0.094 4.094 8 H 0.095 0.905 9 C -0.212 4.212 10 C -0.172 4.172 11 C 0.313 3.687 12 O -0.422 6.422 13 N -0.349 5.349 14 C -0.025 4.025 15 C -0.196 4.196 16 C 0.059 3.941 17 H 0.081 0.919 18 N -0.357 5.357 19 C -0.377 4.377 20 H 0.090 0.910 21 C -0.207 4.207 22 N -0.578 5.578 23 Si 0.740 3.260 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.022 4.022 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.124 0.876 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.094 0.906 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.093 0.907 47 H 0.094 0.906 48 H 0.220 0.780 49 H 0.067 0.933 50 H 0.082 0.918 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.684 26.658 8.578 28.133 hybrid contribution 0.342 -0.777 -0.655 1.072 sum 3.026 25.881 7.924 27.235 Atomic orbital electron populations 1.20839 0.92445 1.02025 1.02121 1.21615 0.95832 0.95028 1.01654 1.20836 0.99549 0.95000 1.01881 1.22689 0.99401 0.93925 1.01901 1.20790 0.99626 0.93864 0.99018 1.21568 0.99807 0.94999 0.98128 1.20899 1.00627 0.93931 0.93912 0.90455 1.21999 1.01172 1.01321 0.96674 1.21721 1.00413 0.94933 1.00085 1.20327 0.84452 0.84325 0.79636 1.90657 1.33537 1.74644 1.43336 1.48555 1.35633 1.24550 1.26138 1.22387 0.90461 0.99256 0.90369 1.23561 1.01525 0.93289 1.01243 1.21188 0.92645 0.85971 0.94247 0.91877 1.42356 1.87275 0.98589 1.07451 1.19166 1.42994 0.88449 0.87076 0.91015 1.24779 1.02491 0.96662 0.96723 1.69657 1.56702 1.09832 1.21560 0.86239 0.77933 0.79567 0.82232 1.21201 1.21655 1.21173 1.22257 0.95647 0.85196 0.99114 0.91590 0.92360 0.91492 0.91592 0.92150 0.92111 0.87577 0.91104 0.90877 0.91886 0.92007 0.93436 0.92866 0.90562 0.89130 0.89242 0.91355 0.91702 0.90659 0.90596 0.77952 0.93301 0.91774 0.91199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 8.55 36.01 0.31 -0.48 16 2 C -0.14 -1.04 6.05 -101.07 -0.61 -1.65 16 3 C -0.12 -0.69 9.98 36.00 0.36 -0.33 16 4 C -0.16 -1.24 9.11 -36.03 -0.33 -1.57 16 5 C -0.10 -0.76 5.17 -27.89 -0.14 -0.91 16 6 C -0.11 -0.87 4.66 -26.74 -0.12 -0.99 16 7 C -0.07 -0.77 2.04 -90.62 -0.18 -0.95 16 8 H 0.08 0.90 7.96 -51.93 -0.41 0.48 16 9 C -0.15 -1.73 8.69 37.16 0.32 -1.40 16 10 C -0.13 -1.40 4.18 -27.88 -0.12 -1.52 16 11 C 0.52 7.90 7.57 -10.99 -0.08 7.82 16 12 O -0.54 -10.03 14.29 5.56 0.08 -9.95 16 13 N -0.61 -9.42 3.33 -170.53 -0.57 -9.99 16 14 C 0.10 1.26 6.69 -2.53 -0.02 1.24 16 15 C -0.15 -2.49 6.77 -24.58 -0.17 -2.65 16 16 C 0.17 3.27 3.59 -66.10 -0.24 3.03 16 17 H 0.06 1.20 8.12 -51.93 -0.42 0.78 16 18 N -0.72 -17.48 5.25 -51.65 -0.27 -17.75 16 19 C -0.25 -6.61 9.98 -15.06 -0.15 -6.76 16 20 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 21 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 22 N -0.93 -27.71 13.06 55.49 0.72 -26.99 16 23 Si 0.91 21.91 29.55 -169.99 -5.02 16.88 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 27 C 0.10 1.81 6.61 -3.07 -0.02 1.79 16 28 H 0.07 0.44 7.86 -51.93 -0.41 0.03 16 29 H 0.06 0.33 7.92 -51.93 -0.41 -0.08 16 30 H 0.07 0.45 7.65 -51.93 -0.40 0.05 16 31 H 0.07 0.37 8.14 -51.92 -0.42 -0.06 16 32 H 0.06 0.32 8.02 -51.93 -0.42 -0.10 16 33 H 0.06 0.34 8.04 -51.93 -0.42 -0.08 16 34 H 0.11 0.76 8.02 -52.48 -0.42 0.34 16 35 H 0.07 0.57 5.86 -51.93 -0.30 0.26 16 36 H 0.07 0.59 6.56 -51.93 -0.34 0.25 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.05 0.53 6.56 -51.93 -0.34 0.19 16 41 H 0.08 1.09 5.95 -51.93 -0.31 0.78 16 42 H 0.09 0.86 7.84 -51.93 -0.41 0.45 16 43 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.07 0.72 7.47 -51.93 -0.39 0.33 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 47 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 48 H 0.39 10.17 7.51 -40.82 -0.31 9.86 16 49 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 50 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 51 H 0.07 1.39 7.69 -51.93 -0.40 0.99 16 LS Contribution 400.39 15.07 6.03 6.03 Total: -1.00 -30.83 400.39 -9.77 -40.59 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -9.45 Total: 6.88 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -1.29 Total: -5.71 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: -0.11 Total: -54.73 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.08 Total: -9.95 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.83 -9.77 -40.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185842394.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.908 kcal (2) G-P(sol) polarization free energy of solvation -30.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds