Wall clock time and date at job start Fri Apr 10 2020 22:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50693 * 119.99889 * 2 1 4 4 C 1.31001 * 119.99753 * 180.02562 * 2 1 3 5 5 C 1.50691 * 120.00430 * 5.27355 * 4 2 1 6 6 C 1.53000 * 109.47687 * 125.12881 * 5 4 2 7 7 C 1.52992 * 109.47438 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.47208 * 55.00254 * 7 6 5 9 9 C 1.53003 * 109.47584 * 295.00439 * 7 6 5 10 10 C 1.52999 * 109.47353 * 175.00168 * 7 6 5 11 11 C 1.50700 * 109.47301 * 185.00596 * 10 7 6 12 12 O 1.21282 * 119.99925 * 359.97438 * 11 10 7 13 13 N 1.34777 * 119.99920 * 180.02562 * 11 10 7 14 14 C 1.47424 * 125.64901 * 0.02562 * 13 11 10 15 15 C 1.54905 * 104.83436 * 155.84508 * 14 13 11 16 16 C 1.55165 * 101.58239 * 37.00704 * 15 14 13 17 17 H 1.08999 * 110.71767 * 83.04020 * 16 15 14 18 18 N 1.46497 * 110.72178 * 206.13671 * 16 15 14 19 19 C 1.36929 * 120.00192 * 273.54733 * 18 16 15 20 20 H 1.08003 * 120.00025 * 0.28029 * 19 18 16 21 21 C 1.38810 * 120.00317 * 179.97438 * 19 18 16 22 22 N 1.31627 * 119.99974 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00206 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46970 * 60.00749 * 23 21 19 25 25 H 1.48507 * 109.47018 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47264 * 300.00098 * 23 21 19 27 27 C 1.47023 * 125.64971 * 179.97438 * 13 11 10 28 28 H 1.09002 * 109.47101 * 235.47632 * 1 2 3 29 29 H 1.08999 * 109.47482 * 355.47667 * 1 2 3 30 30 H 1.09003 * 109.47591 * 115.47852 * 1 2 3 31 31 H 1.09009 * 109.47409 * 270.00057 * 3 2 1 32 32 H 1.08999 * 109.47648 * 29.99959 * 3 2 1 33 33 H 1.08995 * 109.47479 * 150.00445 * 3 2 1 34 34 H 1.08003 * 119.99242 * 185.26726 * 4 2 1 35 35 H 1.08997 * 109.47409 * 5.12749 * 5 4 2 36 36 H 1.09006 * 109.47222 * 245.13359 * 5 4 2 37 37 H 1.09001 * 109.46714 * 60.00249 * 6 5 4 38 38 H 1.08997 * 109.46966 * 300.00542 * 6 5 4 39 39 H 1.09000 * 109.46697 * 300.00128 * 9 7 6 40 40 H 1.08999 * 109.47415 * 59.99487 * 9 7 6 41 41 H 1.09001 * 109.47428 * 179.97438 * 9 7 6 42 42 H 1.08995 * 109.47282 * 65.00108 * 10 7 6 43 43 H 1.09006 * 109.46999 * 305.00395 * 10 7 6 44 44 H 1.08996 * 110.36644 * 37.00112 * 14 13 11 45 45 H 1.09002 * 110.36653 * 274.68010 * 14 13 11 46 46 H 1.09001 * 111.00298 * 278.93733 * 15 14 13 47 47 H 1.08993 * 111.04433 * 155.09717 * 15 14 13 48 48 H 0.96997 * 119.99617 * 93.54573 * 18 16 15 49 49 H 0.96990 * 119.99815 * 179.97438 * 22 21 19 50 50 H 1.09003 * 109.88211 * 61.66843 * 27 13 11 51 51 H 1.09002 * 109.88014 * 300.50573 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1619 -1.1345 -0.0005 5 6 1.4133 -2.4368 -0.1210 6 6 1.9711 -3.2388 -1.2986 7 6 1.2114 -4.5611 -1.4205 8 1 0.1429 -4.3605 -1.4987 9 6 1.4798 -5.4196 -0.1828 10 6 1.6830 -5.3069 -2.6704 11 6 0.8504 -6.5489 -2.8585 12 8 -0.0329 -6.8119 -2.0701 13 7 1.0880 -7.3678 -3.9021 14 6 2.1261 -7.1705 -4.9302 15 6 2.4095 -8.5887 -5.4850 16 6 0.9915 -9.2184 -5.4695 17 1 0.4332 -8.9335 -6.3612 18 7 1.0731 -10.6767 -5.3552 19 6 1.2119 -11.4449 -6.4802 20 1 1.2658 -10.9754 -7.4514 21 6 1.2898 -12.8265 -6.3720 22 7 1.2298 -13.3984 -5.1879 23 14 1.4785 -13.8745 -7.9068 24 1 2.7302 -13.4989 -8.6118 25 1 1.5369 -15.3080 -7.5233 26 1 0.3177 -13.6500 -8.8053 27 6 0.3557 -8.6066 -4.2034 28 1 -0.3633 -0.5824 0.8467 29 1 -0.3634 1.0244 0.0810 30 1 -0.3634 -0.4421 -0.9277 31 1 2.4421 1.6198 -1.0277 32 1 1.6714 2.0648 0.5138 33 1 3.2128 1.1748 0.5137 34 1 3.2386 -1.1364 0.0854 35 1 0.3556 -2.2337 -0.2884 36 1 1.5320 -3.0106 0.7981 37 1 3.0288 -3.4419 -1.1312 38 1 1.8523 -2.6650 -2.2176 39 1 2.5483 -5.6203 -0.1046 40 1 1.1438 -4.8884 0.7078 41 1 0.9382 -6.3616 -0.2694 42 1 2.7302 -5.5857 -2.5537 43 1 1.5739 -4.6610 -3.5417 44 1 3.0274 -6.7507 -4.4835 45 1 1.7562 -6.5200 -5.7228 46 1 3.0873 -9.1362 -4.8301 47 1 2.8043 -8.5403 -6.4998 48 1 1.0289 -11.0980 -4.4827 49 1 1.2838 -14.3638 -5.1124 50 1 -0.6945 -8.3807 -4.3883 51 1 0.4460 -9.3027 -3.3696 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185842394.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:14:33 Heat of formation + Delta-G solvation = -53.269790 kcal Electronic energy + Delta-G solvation = -25049.787506 eV Core-core repulsion = 21561.879680 eV Total energy + Delta-G solvation = -3487.907826 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.16539 -39.07468 -38.21369 -36.39740 -35.89879 -33.37083 -32.04481 -31.00769 -29.83223 -28.64162 -28.23549 -27.28862 -25.61428 -24.30614 -23.43779 -21.61766 -20.98853 -20.03412 -19.32541 -18.66123 -18.03805 -17.32250 -16.73579 -16.48849 -16.23381 -15.73402 -15.44574 -15.34801 -15.19364 -14.81834 -14.74005 -14.35963 -14.02590 -13.76808 -13.74096 -13.50352 -13.22801 -13.17758 -13.04603 -12.94210 -12.77034 -12.67548 -12.64643 -12.43857 -12.35239 -12.20046 -12.13637 -11.88217 -11.77755 -11.69284 -11.60561 -11.43826 -11.33988 -10.92592 -10.70562 -9.63721 -9.47284 -9.04795 -7.94866 -5.25547 1.33262 1.49087 1.52257 1.58189 1.67328 2.00774 2.57428 3.36318 3.52946 3.77755 3.81988 3.86268 3.97830 4.00440 4.10262 4.14672 4.28549 4.33445 4.39638 4.42391 4.53465 4.54909 4.63452 4.68171 4.72803 4.73571 4.77279 4.80505 4.86560 4.88177 4.96242 4.97947 5.00201 5.03141 5.14018 5.16070 5.17404 5.23222 5.28053 5.30052 5.33992 5.45356 5.53473 5.54774 5.57373 5.87369 6.11532 6.25258 6.60734 7.20411 7.31497 8.03617 8.27355 9.28482 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.041993 B = 0.001930 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.613669 B =14506.054761 C =14749.753760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.147 4.147 3 C -0.117 4.117 4 C -0.170 4.170 5 C -0.095 4.095 6 C -0.097 4.097 7 C -0.071 4.071 8 H 0.059 0.941 9 C -0.152 4.152 10 C -0.122 4.122 11 C 0.516 3.484 12 O -0.586 6.586 13 N -0.617 5.617 14 C 0.106 3.894 15 C -0.146 4.146 16 C 0.164 3.836 17 H 0.069 0.931 18 N -0.732 5.732 19 C -0.241 4.241 20 H 0.084 0.916 21 C -0.077 4.077 22 N -0.972 5.972 23 Si 0.977 3.023 24 H -0.274 1.274 25 H -0.300 1.300 26 H -0.277 1.277 27 C 0.110 3.890 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.112 0.888 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.040 0.960 42 H 0.112 0.888 43 H 0.118 0.882 44 H 0.102 0.898 45 H 0.095 0.905 46 H 0.054 0.946 47 H 0.089 0.911 48 H 0.371 0.629 49 H 0.250 0.750 50 H 0.058 0.942 51 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.742 29.746 6.802 30.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.147 4.147 3 C -0.173 4.173 4 C -0.188 4.188 5 C -0.132 4.132 6 C -0.134 4.134 7 C -0.090 4.090 8 H 0.077 0.923 9 C -0.210 4.210 10 C -0.162 4.162 11 C 0.307 3.693 12 O -0.467 6.467 13 N -0.351 5.351 14 C -0.015 4.015 15 C -0.187 4.187 16 C 0.055 3.945 17 H 0.087 0.913 18 N -0.372 5.372 19 C -0.372 4.372 20 H 0.102 0.898 21 C -0.269 4.269 22 N -0.622 5.622 23 Si 0.805 3.195 24 H -0.200 1.200 25 H -0.226 1.226 26 H -0.204 1.204 27 C -0.014 4.014 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.130 0.870 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.059 0.941 42 H 0.130 0.870 43 H 0.136 0.864 44 H 0.121 0.879 45 H 0.113 0.887 46 H 0.073 0.927 47 H 0.108 0.892 48 H 0.203 0.797 49 H 0.059 0.941 50 H 0.076 0.924 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.268 29.613 7.086 30.746 hybrid contribution -0.202 -1.584 -0.147 1.604 sum 4.067 28.028 6.939 29.159 Atomic orbital electron populations 1.20862 0.92304 1.02530 1.01923 1.21856 0.96202 0.95628 1.01018 1.20866 0.99662 0.94455 1.02353 1.22723 0.99704 0.93749 1.02607 1.20757 0.99490 0.94130 0.98848 1.21472 0.99867 0.93516 0.98575 1.20858 0.99985 0.94866 0.93302 0.92275 1.21953 1.01273 0.99896 0.97829 1.21793 1.00321 0.92766 1.01275 1.21265 0.84273 0.85191 0.78540 1.90650 1.35576 1.75759 1.44677 1.48674 1.35912 1.23482 1.27031 1.22541 0.91140 0.97367 0.90489 1.23362 0.98435 0.94948 1.01924 1.21402 0.94978 0.83388 0.94780 0.91305 1.42550 1.87653 1.00827 1.06169 1.19612 1.40598 0.88885 0.88139 0.89788 1.25624 1.03621 0.98155 0.99503 1.69835 1.59157 1.09454 1.23789 0.85168 0.78338 0.77151 0.78816 1.19992 1.22637 1.20350 1.21922 0.95800 0.86190 0.97535 0.91863 0.91518 0.91650 0.91082 0.91554 0.91738 0.87005 0.91584 0.91364 0.90820 0.91019 0.92349 0.92147 0.94131 0.86970 0.86351 0.87944 0.88734 0.92719 0.89239 0.79737 0.94097 0.92382 0.94167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.44 8.55 71.24 0.61 -0.83 16 2 C -0.15 -1.91 6.05 -16.49 -0.10 -2.01 16 3 C -0.12 -1.16 9.98 71.23 0.71 -0.45 16 4 C -0.17 -2.28 9.11 25.64 0.23 -2.05 16 5 C -0.10 -1.35 5.17 29.85 0.15 -1.20 16 6 C -0.10 -1.30 4.66 30.59 0.14 -1.15 16 7 C -0.07 -1.33 2.04 -10.80 -0.02 -1.35 16 8 H 0.06 1.33 7.96 -2.39 -0.02 1.31 16 9 C -0.15 -3.32 8.69 71.98 0.63 -2.69 16 10 C -0.12 -2.22 4.18 29.85 0.12 -2.09 16 11 C 0.52 14.99 7.57 87.66 0.66 15.65 16 12 O -0.59 -22.10 14.29 -3.04 -0.04 -22.15 16 13 N -0.62 -18.02 3.33 -811.81 -2.70 -20.72 16 14 C 0.11 2.32 6.69 86.85 0.58 2.90 16 15 C -0.15 -4.40 6.77 31.99 0.22 -4.18 16 16 C 0.16 6.20 3.59 46.18 0.17 6.37 16 17 H 0.07 2.53 8.12 -2.39 -0.02 2.51 16 18 N -0.73 -36.44 5.25 -317.34 -1.67 -38.11 16 19 C -0.24 -12.97 9.98 84.03 0.84 -12.13 16 20 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 21 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 22 N -0.97 -59.65 13.06 21.65 0.28 -59.36 16 23 Si 0.98 45.32 29.55 68.60 2.03 47.34 16 24 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 25 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 26 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 27 C 0.11 4.01 6.61 86.73 0.57 4.58 16 28 H 0.06 0.79 7.86 -2.39 -0.02 0.77 16 29 H 0.07 0.67 7.92 -2.39 -0.02 0.65 16 30 H 0.06 0.80 7.65 -2.39 -0.02 0.78 16 31 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.07 0.57 8.02 -2.39 -0.02 0.55 16 33 H 0.06 0.59 8.04 -2.39 -0.02 0.57 16 34 H 0.11 1.35 8.02 -2.91 -0.02 1.33 16 35 H 0.07 0.99 5.86 -2.39 -0.01 0.98 16 36 H 0.07 1.02 6.56 -2.38 -0.02 1.01 16 37 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.06 1.18 6.56 -2.39 -0.02 1.17 16 41 H 0.04 1.18 5.95 -2.39 -0.01 1.17 16 42 H 0.11 1.62 7.84 -2.39 -0.02 1.61 16 43 H 0.12 1.53 8.14 -2.38 -0.02 1.52 16 44 H 0.10 1.63 7.47 -2.39 -0.02 1.61 16 45 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 48 H 0.37 20.41 7.51 -92.71 -0.70 19.72 16 49 H 0.25 14.99 8.31 -92.72 -0.77 14.22 16 50 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 51 H 0.04 1.69 7.69 -2.39 -0.02 1.67 16 Total: -1.00 -69.40 400.39 4.07 -65.33 By element: Atomic # 1 Polarization: 32.01 SS G_CDS: 0.19 Total: 32.20 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: 5.98 Total: -4.53 kcal Atomic # 7 Polarization: -114.11 SS G_CDS: -4.08 Total: -118.19 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.04 Total: -22.15 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -69.40 4.07 -65.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185842394.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.062 kcal (2) G-P(sol) polarization free energy of solvation -69.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds