Wall clock time and date at job start Fri Apr 10 2020 22:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47088 * 2 1 4 4 N 1.46504 * 109.46650 * 240.00347 * 2 1 3 5 5 C 1.34770 * 120.00080 * 85.00048 * 4 2 1 6 6 O 1.21284 * 120.00197 * 359.97438 * 5 4 2 7 7 C 1.50703 * 119.99955 * 180.02562 * 5 4 2 8 8 C 1.53006 * 109.47129 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.46932 * 179.97438 * 8 7 5 10 10 C 1.52995 * 115.56200 * 34.31421 * 9 8 7 11 11 C 1.52998 * 117.49843 * 248.61862 * 9 8 7 12 12 C 1.53003 * 117.49714 * 179.97438 * 9 8 7 13 13 C 1.52994 * 109.47422 * 120.00317 * 2 1 3 14 14 C 1.53040 * 109.46298 * 60.06757 * 13 2 1 15 15 C 1.53185 * 109.31783 * 178.61596 * 14 13 2 16 16 N 1.46931 * 108.77700 * 54.63190 * 15 14 13 17 17 C 1.36938 * 120.63093 * 126.41513 * 16 15 14 18 18 H 1.08004 * 119.99260 * 207.66495 * 17 16 15 19 19 C 1.38804 * 120.00110 * 27.66578 * 17 16 15 20 20 N 1.31617 * 120.00214 * 17.36720 * 19 17 16 21 21 Si 1.86796 * 120.00039 * 197.36515 * 19 17 16 22 22 H 1.48503 * 109.46986 * 90.00024 * 21 19 17 23 23 H 1.48501 * 109.47186 * 209.99811 * 21 19 17 24 24 H 1.48500 * 109.47430 * 330.00174 * 21 19 17 25 25 C 1.46929 * 118.73794 * 306.39508 * 16 15 14 26 26 C 1.53037 * 109.46064 * 299.99585 * 13 2 1 27 27 H 1.09002 * 109.47105 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46610 * 299.99765 * 1 2 3 29 29 H 1.08996 * 109.47414 * 59.99429 * 1 2 3 30 30 H 0.97000 * 119.99523 * 264.99935 * 4 2 1 31 31 H 1.08993 * 109.47656 * 59.99680 * 7 5 4 32 32 H 1.09003 * 109.47103 * 299.99765 * 7 5 4 33 33 H 1.09000 * 109.46845 * 59.99702 * 8 7 5 34 34 H 1.08999 * 109.46975 * 299.99386 * 8 7 5 35 35 H 1.09006 * 109.47003 * 205.68726 * 10 9 8 36 36 H 1.09006 * 109.47514 * 325.68311 * 10 9 8 37 37 H 1.09000 * 109.47469 * 85.68565 * 10 9 8 38 38 H 1.08997 * 117.50198 * 0.02562 * 11 9 8 39 39 H 1.09003 * 117.49569 * 145.02267 * 11 9 8 40 40 H 1.08993 * 117.50362 * 214.97907 * 12 9 8 41 41 H 1.09002 * 117.49613 * 0.02562 * 12 9 8 42 42 H 1.09005 * 109.46090 * 180.02562 * 13 2 1 43 43 H 1.09010 * 109.49305 * 298.56548 * 14 13 2 44 44 H 1.09001 * 109.50310 * 58.65888 * 14 13 2 45 45 H 1.09006 * 109.58555 * 294.84910 * 15 14 13 46 46 H 1.08997 * 109.58934 * 174.41898 * 15 14 13 47 47 H 0.96998 * 120.00729 * 179.97438 * 20 19 17 48 48 H 1.09000 * 109.58704 * 293.82153 * 25 16 15 49 49 H 1.08999 * 109.58853 * 173.39201 * 25 16 15 50 50 H 1.09001 * 109.49862 * 301.33973 * 26 13 2 51 51 H 1.09002 * 109.49686 * 61.40203 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6906 -1.1963 5 6 2.1469 -0.0182 -2.3572 6 8 1.8581 1.1585 -2.4117 7 6 2.6486 -0.7287 -3.5878 8 6 2.6995 0.2543 -4.7592 9 6 3.2095 -0.4669 -6.0085 10 6 2.7928 -1.9331 -6.1406 11 6 4.5910 -0.0748 -6.5361 12 6 3.3324 0.3510 -7.2957 13 6 2.0401 -0.7213 1.2491 14 6 1.5312 -2.1646 1.2480 15 6 2.0721 -2.8935 2.4820 16 7 1.7088 -2.1265 3.6814 17 6 1.0457 -2.7262 4.7187 18 1 0.4037 -2.1402 5.3598 19 6 1.1987 -4.0869 4.9462 20 7 2.2123 -4.7337 4.4109 21 14 -0.0338 -5.0001 6.0121 22 1 -1.1353 -5.5185 5.1617 23 1 0.6432 -6.1341 6.6909 24 1 -0.5894 -4.0736 7.0310 25 6 2.0708 -0.7041 3.7469 26 6 1.5299 0.0003 2.4986 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 2.2489 -1.6317 -1.1527 31 1 1.9757 -1.5505 -3.8327 32 1 3.6477 -1.1213 -3.3988 33 1 3.3723 1.0764 -4.5146 34 1 1.7002 0.6465 -4.9481 35 1 3.5230 -2.4648 -6.7508 36 1 2.7461 -2.3882 -5.1512 37 1 1.8126 -1.9911 -6.6138 38 1 5.1368 0.6967 -5.9931 39 1 5.2031 -0.8614 -6.9774 40 1 3.1168 -0.1555 -8.2364 41 1 3.0504 1.4030 -7.2523 42 1 3.1301 -0.7207 1.2491 43 1 0.4414 -2.1662 1.2732 44 1 1.8755 -2.6711 0.3463 45 1 3.1571 -2.9723 2.4135 46 1 1.6341 -3.8900 2.5390 47 1 2.3195 -5.6845 4.5701 48 1 3.1557 -0.6043 3.7814 49 1 1.6319 -0.2559 4.6383 50 1 1.8733 1.0348 2.4870 51 1 0.4402 -0.0211 2.5116 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755850354.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:49 Heat of formation + Delta-G solvation = -15.890746 kcal Electronic energy + Delta-G solvation = -26057.192878 eV Core-core repulsion = 22570.905929 eV Total energy + Delta-G solvation = -3486.286949 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.06691 -38.68779 -37.88379 -35.28105 -33.01693 -32.44901 -30.87789 -30.00096 -28.83885 -28.44364 -25.65768 -25.01052 -23.14350 -22.69445 -22.32998 -20.69380 -20.09626 -19.00296 -18.64882 -17.22067 -16.69100 -15.94902 -15.65581 -15.48545 -14.88030 -14.65969 -14.30874 -13.89250 -13.80696 -13.67294 -13.44006 -13.17589 -12.96061 -12.67002 -12.50713 -12.47855 -12.39846 -12.06889 -11.78643 -11.60564 -11.50859 -11.41420 -11.21275 -11.18593 -10.83302 -10.74028 -10.48294 -10.38625 -10.17023 -10.15052 -9.91685 -9.85916 -9.73003 -9.52735 -9.36041 -8.91765 -8.47222 -6.67819 -5.79748 -3.21451 2.70605 3.24209 3.36781 3.43982 3.44997 3.47777 4.38988 4.43711 4.49024 4.62929 4.65396 4.93810 4.99764 5.09806 5.13740 5.19405 5.34742 5.35874 5.37481 5.40295 5.47226 5.53048 5.54580 5.62184 5.67349 5.76074 5.77017 5.82569 5.85773 5.87895 5.96379 6.04998 6.11438 6.14747 6.17369 6.28647 6.35722 6.48516 6.55952 6.67835 6.73469 6.76979 6.83435 7.00645 7.35969 7.61597 7.63983 7.79015 8.30930 8.44449 9.21028 9.84701 10.41398 11.28720 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.023997 B = 0.002533 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.523807 B =11050.838741 C =11654.832026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.145 3.855 3 H 0.080 0.920 4 N -0.722 5.722 5 C 0.510 3.490 6 O -0.549 6.549 7 C -0.142 4.142 8 C -0.064 4.064 9 C -0.129 4.129 10 C -0.123 4.123 11 C -0.176 4.176 12 C -0.177 4.177 13 C -0.085 4.085 14 C -0.136 4.136 15 C 0.171 3.829 16 N -0.592 5.592 17 C -0.250 4.250 18 H 0.065 0.935 19 C 0.001 3.999 20 N -0.904 5.904 21 Si 0.902 3.098 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.279 1.279 25 C 0.145 3.855 26 C -0.126 4.126 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.401 0.599 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.066 0.934 43 H 0.061 0.939 44 H 0.042 0.958 45 H 0.016 0.984 46 H 0.087 0.913 47 H 0.253 0.747 48 H 0.016 0.984 49 H 0.053 0.947 50 H 0.050 0.950 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.882 6.842 -19.863 21.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.098 0.902 4 N -0.374 5.374 5 C 0.296 3.704 6 O -0.427 6.427 7 C -0.182 4.182 8 C -0.101 4.101 9 C -0.129 4.129 10 C -0.180 4.180 11 C -0.213 4.213 12 C -0.214 4.214 13 C -0.104 4.104 14 C -0.175 4.175 15 C 0.045 3.955 16 N -0.315 5.315 17 C -0.380 4.380 18 H 0.083 0.917 19 C -0.198 4.198 20 N -0.549 5.549 21 Si 0.732 3.268 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.205 1.205 25 C 0.019 3.981 26 C -0.166 4.166 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.236 0.764 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.061 0.939 45 H 0.034 0.966 46 H 0.105 0.895 47 H 0.063 0.937 48 H 0.034 0.966 49 H 0.072 0.928 50 H 0.069 0.931 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.719 7.510 -19.842 21.285 hybrid contribution -0.394 -1.052 0.513 1.235 sum 1.325 6.458 -19.329 20.422 Atomic orbital electron populations 1.22218 0.95504 1.02407 1.01851 1.21075 0.94155 0.96759 0.83914 0.90166 1.46280 1.66953 1.14330 1.09866 1.20732 0.77493 0.87393 0.84759 1.90678 1.50549 1.16244 1.85227 1.21779 1.03251 1.00001 0.93126 1.20829 1.02292 0.96622 0.90406 1.21552 1.00116 0.96103 0.95102 1.21498 1.01237 0.92786 1.02516 1.23185 0.90594 1.03536 1.04024 1.23028 1.02370 1.00504 0.95456 1.21310 0.99962 0.96294 0.92873 1.22291 1.01071 0.94484 0.99668 1.20763 0.96290 0.95815 0.82626 1.44051 1.66807 1.04716 1.15899 1.19205 1.19156 0.91989 1.07608 0.91692 1.25024 0.97148 0.98246 0.99347 1.70032 1.27884 1.08852 1.48083 0.86298 0.80976 0.79514 0.80046 1.21488 1.21805 1.20452 1.20896 0.96223 0.86282 0.94703 1.22072 1.01108 0.97646 0.95746 0.92004 0.91333 0.93074 0.76386 0.88541 0.88818 0.91055 0.90885 0.92528 0.91261 0.92193 0.88823 0.88942 0.88921 0.88810 0.91510 0.92060 0.93910 0.96622 0.89496 0.93687 0.96601 0.92796 0.93089 0.91752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 8.78 37.16 0.33 -1.92 16 2 C 0.15 2.05 2.40 -67.93 -0.16 1.88 16 3 H 0.08 1.23 7.58 -51.93 -0.39 0.84 16 4 N -0.72 -8.95 5.00 -53.81 -0.27 -9.22 16 5 C 0.51 6.51 7.79 -10.99 -0.09 6.42 16 6 O -0.55 -9.02 15.65 5.55 0.09 -8.93 16 7 C -0.14 -1.29 4.70 -27.88 -0.13 -1.42 16 8 C -0.06 -0.60 4.69 -26.73 -0.13 -0.73 16 9 C -0.13 -1.02 2.47 -154.51 -0.38 -1.40 16 10 C -0.12 -0.85 9.49 37.16 0.35 -0.50 16 11 C -0.18 -1.32 9.82 -26.71 -0.26 -1.58 16 12 C -0.18 -1.32 9.97 -26.71 -0.27 -1.58 16 13 C -0.09 -1.34 2.14 -90.58 -0.19 -1.53 16 14 C -0.14 -2.36 4.81 -26.61 -0.13 -2.49 16 15 C 0.17 3.90 5.31 -3.71 -0.02 3.88 16 16 N -0.59 -14.46 3.00 -172.31 -0.52 -14.98 16 17 C -0.25 -6.76 9.58 -15.06 -0.14 -6.90 16 18 H 0.07 1.74 7.89 -52.48 -0.41 1.32 16 19 C 0.00 0.02 4.91 -17.43 -0.09 -0.07 16 20 N -0.90 -25.85 11.19 55.49 0.62 -25.23 16 21 Si 0.90 21.48 29.59 -169.99 -5.03 16.46 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C 0.15 2.98 6.52 -3.71 -0.02 2.96 16 26 C -0.13 -2.11 4.97 -26.61 -0.13 -2.24 16 27 H 0.06 0.87 6.46 -51.93 -0.34 0.53 16 28 H 0.07 0.94 6.46 -51.93 -0.34 0.60 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.40 4.33 6.84 -40.82 -0.28 4.05 16 31 H 0.10 0.73 6.45 -51.93 -0.33 0.40 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.75 7.86 -51.93 -0.41 0.34 16 34 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 35 H 0.06 0.36 7.90 -51.93 -0.41 -0.05 16 36 H 0.07 0.44 5.59 -51.93 -0.29 0.15 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 0.71 8.05 -51.93 -0.42 0.29 16 39 H 0.09 0.62 8.05 -51.93 -0.42 0.20 16 40 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.06 1.11 6.51 -51.92 -0.34 0.78 16 44 H 0.04 0.64 6.46 -51.93 -0.34 0.30 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.09 2.24 6.04 -51.93 -0.31 1.93 16 47 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 48 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 50 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 51 H 0.06 1.10 6.51 -51.93 -0.34 0.76 16 LS Contribution 386.35 15.07 5.82 5.82 Total: -1.00 -30.56 386.35 -9.88 -40.44 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -9.13 Total: 2.87 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -1.46 Total: -7.23 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: -0.16 Total: -49.43 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.09 Total: -8.93 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.56 -9.88 -40.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755850354.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.549 kcal (2) G-P(sol) polarization free energy of solvation -30.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds