Wall clock time and date at job start Fri Apr 10 2020 22:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47088 * 2 1 4 4 N 1.46504 * 109.46650 * 240.00347 * 2 1 3 5 5 C 1.34770 * 120.00080 * 85.00048 * 4 2 1 6 6 O 1.21284 * 120.00197 * 359.97438 * 5 4 2 7 7 C 1.50703 * 119.99955 * 180.02562 * 5 4 2 8 8 C 1.53006 * 109.47129 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.46932 * 179.97438 * 8 7 5 10 10 C 1.52995 * 115.56200 * 34.31421 * 9 8 7 11 11 C 1.52998 * 117.49843 * 248.61862 * 9 8 7 12 12 C 1.53003 * 117.49714 * 179.97438 * 9 8 7 13 13 C 1.52994 * 109.47422 * 120.00317 * 2 1 3 14 14 C 1.53040 * 109.46298 * 60.06757 * 13 2 1 15 15 C 1.53185 * 109.31783 * 178.61596 * 14 13 2 16 16 N 1.46931 * 108.77700 * 54.63190 * 15 14 13 17 17 C 1.36938 * 120.63093 * 126.41513 * 16 15 14 18 18 H 1.08004 * 119.99260 * 207.66495 * 17 16 15 19 19 C 1.38804 * 120.00110 * 27.66578 * 17 16 15 20 20 N 1.31617 * 120.00214 * 17.36720 * 19 17 16 21 21 Si 1.86796 * 120.00039 * 197.36515 * 19 17 16 22 22 H 1.48503 * 109.46986 * 90.00024 * 21 19 17 23 23 H 1.48501 * 109.47186 * 209.99811 * 21 19 17 24 24 H 1.48500 * 109.47430 * 330.00174 * 21 19 17 25 25 C 1.46929 * 118.73794 * 306.39508 * 16 15 14 26 26 C 1.53037 * 109.46064 * 299.99585 * 13 2 1 27 27 H 1.09002 * 109.47105 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46610 * 299.99765 * 1 2 3 29 29 H 1.08996 * 109.47414 * 59.99429 * 1 2 3 30 30 H 0.97000 * 119.99523 * 264.99935 * 4 2 1 31 31 H 1.08993 * 109.47656 * 59.99680 * 7 5 4 32 32 H 1.09003 * 109.47103 * 299.99765 * 7 5 4 33 33 H 1.09000 * 109.46845 * 59.99702 * 8 7 5 34 34 H 1.08999 * 109.46975 * 299.99386 * 8 7 5 35 35 H 1.09006 * 109.47003 * 205.68726 * 10 9 8 36 36 H 1.09006 * 109.47514 * 325.68311 * 10 9 8 37 37 H 1.09000 * 109.47469 * 85.68565 * 10 9 8 38 38 H 1.08997 * 117.50198 * 0.02562 * 11 9 8 39 39 H 1.09003 * 117.49569 * 145.02267 * 11 9 8 40 40 H 1.08993 * 117.50362 * 214.97907 * 12 9 8 41 41 H 1.09002 * 117.49613 * 0.02562 * 12 9 8 42 42 H 1.09005 * 109.46090 * 180.02562 * 13 2 1 43 43 H 1.09010 * 109.49305 * 298.56548 * 14 13 2 44 44 H 1.09001 * 109.50310 * 58.65888 * 14 13 2 45 45 H 1.09006 * 109.58555 * 294.84910 * 15 14 13 46 46 H 1.08997 * 109.58934 * 174.41898 * 15 14 13 47 47 H 0.96998 * 120.00729 * 179.97438 * 20 19 17 48 48 H 1.09000 * 109.58704 * 293.82153 * 25 16 15 49 49 H 1.08999 * 109.58853 * 173.39201 * 25 16 15 50 50 H 1.09001 * 109.49862 * 301.33973 * 26 13 2 51 51 H 1.09002 * 109.49686 * 61.40203 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6906 -1.1963 5 6 2.1469 -0.0182 -2.3572 6 8 1.8581 1.1585 -2.4117 7 6 2.6486 -0.7287 -3.5878 8 6 2.6995 0.2543 -4.7592 9 6 3.2095 -0.4669 -6.0085 10 6 2.7928 -1.9331 -6.1406 11 6 4.5910 -0.0748 -6.5361 12 6 3.3324 0.3510 -7.2957 13 6 2.0401 -0.7213 1.2491 14 6 1.5312 -2.1646 1.2480 15 6 2.0721 -2.8935 2.4820 16 7 1.7088 -2.1265 3.6814 17 6 1.0457 -2.7262 4.7187 18 1 0.4037 -2.1402 5.3598 19 6 1.1987 -4.0869 4.9462 20 7 2.2123 -4.7337 4.4109 21 14 -0.0338 -5.0001 6.0121 22 1 -1.1353 -5.5185 5.1617 23 1 0.6432 -6.1341 6.6909 24 1 -0.5894 -4.0736 7.0310 25 6 2.0708 -0.7041 3.7469 26 6 1.5299 0.0003 2.4986 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 2.2489 -1.6317 -1.1527 31 1 1.9757 -1.5505 -3.8327 32 1 3.6477 -1.1213 -3.3988 33 1 3.3723 1.0764 -4.5146 34 1 1.7002 0.6465 -4.9481 35 1 3.5230 -2.4648 -6.7508 36 1 2.7461 -2.3882 -5.1512 37 1 1.8126 -1.9911 -6.6138 38 1 5.1368 0.6967 -5.9931 39 1 5.2031 -0.8614 -6.9774 40 1 3.1168 -0.1555 -8.2364 41 1 3.0504 1.4030 -7.2523 42 1 3.1301 -0.7207 1.2491 43 1 0.4414 -2.1662 1.2732 44 1 1.8755 -2.6711 0.3463 45 1 3.1571 -2.9723 2.4135 46 1 1.6341 -3.8900 2.5390 47 1 2.3195 -5.6845 4.5701 48 1 3.1557 -0.6043 3.7814 49 1 1.6319 -0.2559 4.6383 50 1 1.8733 1.0348 2.4870 51 1 0.4402 -0.0211 2.5116 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755850354.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:11:48 Heat of formation + Delta-G solvation = -32.252686 kcal Electronic energy + Delta-G solvation = -26057.902385 eV Core-core repulsion = 22570.905929 eV Total energy + Delta-G solvation = -3486.996456 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.13570 -39.69346 -38.95518 -36.77332 -34.50440 -33.45502 -32.37849 -31.59476 -30.22118 -29.04322 -27.16471 -26.14153 -24.59317 -23.89327 -23.26948 -22.16981 -21.19192 -20.15890 -19.61497 -18.61969 -18.12299 -17.01279 -16.80637 -16.57791 -16.14962 -15.76702 -15.56657 -15.43947 -15.17944 -14.84248 -14.56694 -14.41355 -14.08110 -14.00204 -13.74101 -13.54900 -13.17745 -13.06264 -12.98858 -12.93748 -12.86400 -12.56019 -12.44905 -12.35358 -12.16128 -12.06127 -11.91994 -11.88958 -11.69413 -11.52311 -11.18471 -10.99185 -10.96890 -10.72171 -10.50390 -10.45374 -10.01900 -8.65493 -7.85637 -5.29974 1.47427 1.48794 1.57266 1.71492 2.26934 2.52542 2.87486 3.28203 3.68285 3.71730 3.78178 3.84553 3.91395 3.98465 4.05048 4.07508 4.25079 4.35302 4.41688 4.45361 4.47270 4.58632 4.65411 4.69635 4.74332 4.81003 4.81328 4.91722 4.96055 4.97688 5.00047 5.04727 5.05778 5.15138 5.18992 5.20661 5.26731 5.28405 5.29604 5.29999 5.34219 5.45094 5.50019 5.56504 5.62348 5.70004 5.83825 6.41574 6.63490 7.17844 7.32448 7.89844 8.40651 9.20333 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.023997 B = 0.002533 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.523807 B =11050.838741 C =11654.832026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 H 0.072 0.928 4 N -0.717 5.717 5 C 0.508 3.492 6 O -0.588 6.588 7 C -0.133 4.133 8 C -0.060 4.060 9 C -0.133 4.133 10 C -0.123 4.123 11 C -0.176 4.176 12 C -0.180 4.180 13 C -0.074 4.074 14 C -0.120 4.120 15 C 0.176 3.824 16 N -0.611 5.611 17 C -0.260 4.260 18 H 0.064 0.936 19 C -0.051 4.051 20 N -0.934 5.934 21 Si 0.964 3.036 22 H -0.285 1.285 23 H -0.296 1.296 24 H -0.271 1.271 25 C 0.140 3.860 26 C -0.116 4.116 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.047 0.953 30 H 0.410 0.590 31 H 0.118 0.882 32 H 0.113 0.887 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.088 0.912 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.071 0.929 45 H -0.006 1.006 46 H 0.053 0.947 47 H 0.249 0.751 48 H 0.011 0.989 49 H 0.051 0.949 50 H 0.076 0.924 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.494 6.807 -21.166 22.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.051 3.949 3 H 0.090 0.910 4 N -0.369 5.369 5 C 0.297 3.703 6 O -0.469 6.469 7 C -0.173 4.173 8 C -0.098 4.098 9 C -0.133 4.133 10 C -0.180 4.180 11 C -0.213 4.213 12 C -0.217 4.217 13 C -0.094 4.094 14 C -0.159 4.159 15 C 0.050 3.950 16 N -0.334 5.334 17 C -0.390 4.390 18 H 0.082 0.918 19 C -0.246 4.246 20 N -0.581 5.581 21 Si 0.793 3.207 22 H -0.211 1.211 23 H -0.223 1.223 24 H -0.196 1.196 25 C 0.015 3.985 26 C -0.156 4.156 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.248 0.752 31 H 0.136 0.864 32 H 0.131 0.869 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.108 0.892 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.107 0.893 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.012 0.988 46 H 0.071 0.929 47 H 0.059 0.941 48 H 0.029 0.971 49 H 0.070 0.930 50 H 0.094 0.906 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.332 7.484 -21.154 22.479 hybrid contribution -0.226 -0.979 0.940 1.376 sum 1.106 6.505 -20.214 21.264 Atomic orbital electron populations 1.22161 0.95138 1.02343 1.01778 1.20817 0.94254 0.96148 0.83698 0.90961 1.46213 1.66639 1.14736 1.09354 1.21344 0.76537 0.86962 0.85504 1.90666 1.52288 1.18114 1.85828 1.21806 1.04568 0.99939 0.90946 1.20742 1.01104 0.96512 0.91452 1.21544 1.00516 0.96743 0.94472 1.21520 1.01532 0.91842 1.03126 1.23234 0.90516 1.03688 1.03820 1.23092 1.02419 1.00373 0.95771 1.21167 0.99711 0.95106 0.93375 1.22071 1.00562 0.95206 0.98061 1.20610 0.94846 0.95003 0.84530 1.44338 1.66908 1.06200 1.15978 1.19505 1.19045 0.92419 1.08026 0.91825 1.25739 0.98751 0.99039 1.01091 1.70177 1.29478 1.08694 1.49707 0.85314 0.78755 0.78072 0.78600 1.21150 1.22267 1.19565 1.21044 0.96039 0.84652 0.96760 1.21943 1.00947 0.98570 0.94116 0.91990 0.91157 0.93433 0.75225 0.86372 0.86934 0.92637 0.92393 0.91790 0.90583 0.92040 0.89250 0.87873 0.87916 0.89312 0.91725 0.92414 0.91030 0.98768 0.92851 0.94149 0.97117 0.92994 0.90574 0.91749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.03 8.78 71.98 0.63 -3.40 16 2 C 0.16 4.07 2.40 44.99 0.11 4.18 16 3 H 0.07 2.08 7.58 -2.39 -0.02 2.06 16 4 N -0.72 -16.11 5.00 -442.54 -2.21 -18.32 16 5 C 0.51 12.07 7.79 87.66 0.68 12.75 16 6 O -0.59 -18.82 15.65 -3.04 -0.05 -18.87 16 7 C -0.13 -2.12 4.70 29.85 0.14 -1.97 16 8 C -0.06 -1.07 4.69 30.60 0.14 -0.93 16 9 C -0.13 -1.88 2.47 -52.18 -0.13 -2.01 16 10 C -0.12 -1.38 9.49 71.98 0.68 -0.70 16 11 C -0.18 -2.34 9.82 30.61 0.30 -2.04 16 12 C -0.18 -2.44 9.97 30.61 0.31 -2.14 16 13 C -0.07 -2.20 2.14 -10.77 -0.02 -2.22 16 14 C -0.12 -4.00 4.81 30.67 0.15 -3.85 16 15 C 0.18 8.08 5.31 86.36 0.46 8.53 16 16 N -0.61 -30.00 3.00 -699.08 -2.09 -32.10 16 17 C -0.26 -14.14 9.58 84.03 0.81 -13.34 16 18 H 0.06 3.41 7.89 -2.91 -0.02 3.38 16 19 C -0.05 -2.82 4.91 84.86 0.42 -2.40 16 20 N -0.93 -54.52 11.19 21.65 0.24 -54.28 16 21 Si 0.96 44.49 29.59 68.60 2.03 46.52 16 22 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 23 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 25 C 0.14 5.70 6.52 86.36 0.56 6.26 16 26 C -0.12 -3.69 4.97 30.67 0.15 -3.54 16 27 H 0.06 1.60 6.46 -2.39 -0.02 1.58 16 28 H 0.07 1.78 6.46 -2.39 -0.02 1.77 16 29 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.41 7.64 6.84 -92.71 -0.63 7.00 16 31 H 0.12 1.41 6.45 -2.39 -0.02 1.39 16 32 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.05 1.15 7.86 -2.39 -0.02 1.13 16 34 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 35 H 0.06 0.63 7.90 -2.38 -0.02 0.61 16 36 H 0.08 0.73 5.59 -2.38 -0.01 0.72 16 37 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.09 1.26 8.05 -2.39 -0.02 1.24 16 39 H 0.10 1.15 8.05 -2.39 -0.02 1.13 16 40 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 43 H 0.06 2.00 6.51 -2.38 -0.02 1.98 16 44 H 0.07 1.96 6.46 -2.39 -0.02 1.95 16 45 H -0.01 -0.28 8.14 -2.38 -0.02 -0.30 16 46 H 0.05 2.81 6.04 -2.39 -0.01 2.79 16 47 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 48 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 49 H 0.05 2.08 7.93 -2.39 -0.02 2.06 16 50 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 51 H 0.06 2.07 6.51 -2.39 -0.02 2.05 16 Total: -1.00 -66.75 386.35 3.57 -63.17 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 0.27 Total: 20.69 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: 5.39 Total: -6.81 kcal Atomic # 7 Polarization: -100.64 SS G_CDS: -4.06 Total: -104.70 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.05 Total: -18.87 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -66.75 3.57 -63.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755850354.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.921 kcal (2) G-P(sol) polarization free energy of solvation -66.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds