Wall clock time and date at job start Fri Apr 10 2020 22:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46886 * 2 1 4 4 C 1.53003 * 109.46746 * 119.99664 * 2 1 3 5 5 C 1.50701 * 109.47006 * 295.00044 * 4 2 1 6 6 H 1.07992 * 120.00158 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99545 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00414 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99644 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47105 * 90.00186 * 9 7 5 11 11 H 1.48501 * 109.46950 * 209.99978 * 9 7 5 12 12 H 1.48503 * 109.47334 * 330.00028 * 9 7 5 13 13 C 1.52995 * 109.47291 * 239.99605 * 2 1 3 14 14 N 1.46902 * 109.47058 * 64.99817 * 13 2 1 15 15 C 1.44274 * 110.99471 * 68.01892 * 14 13 2 16 16 C 1.54070 * 111.97951 * 219.30765 * 15 14 13 17 17 C 1.54294 * 112.28877 * 318.91691 * 16 15 14 18 18 C 1.50456 * 113.03440 * 318.30321 * 17 16 15 19 19 H 1.09000 * 109.57613 * 332.33991 * 18 17 16 20 20 N 1.46499 * 109.57386 * 211.96470 * 18 17 16 21 21 C 1.46766 * 124.35093 * 120.63023 * 20 18 17 22 22 C 1.54476 * 105.47477 * 197.02085 * 21 20 18 23 23 C 1.54631 * 101.76440 * 334.57909 * 22 21 20 24 24 C 1.34418 * 124.35253 * 300.33272 * 20 18 17 25 25 O 1.21283 * 124.93702 * 359.56999 * 24 20 18 26 26 C 1.54510 * 108.85826 * 92.15404 * 18 17 16 27 27 C 1.45866 * 111.58793 * 282.81050 * 26 18 17 28 28 H 1.09000 * 109.47055 * 300.00537 * 1 2 3 29 29 H 1.09000 * 109.46663 * 60.00314 * 1 2 3 30 30 H 1.09000 * 109.47288 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47199 * 55.00137 * 4 2 1 32 32 H 1.09002 * 109.46745 * 175.00101 * 4 2 1 33 33 H 0.97003 * 120.00502 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.46974 * 305.00687 * 13 2 1 35 35 H 1.08990 * 109.47592 * 185.00349 * 13 2 1 36 36 H 1.08991 * 108.98330 * 339.95291 * 15 14 13 37 37 H 1.09001 * 108.97802 * 98.75506 * 15 14 13 38 38 H 1.09002 * 108.91812 * 79.63952 * 16 15 14 39 39 H 1.08993 * 108.91934 * 198.28671 * 16 15 14 40 40 H 1.09004 * 108.76905 * 79.21512 * 17 16 15 41 41 H 1.08993 * 108.77248 * 197.38255 * 17 16 15 42 42 H 1.09000 * 110.24576 * 316.01532 * 21 20 18 43 43 H 1.08996 * 110.24814 * 78.01871 * 21 20 18 44 44 H 1.08995 * 110.97600 * 92.70158 * 22 21 20 45 45 H 1.09003 * 110.96785 * 216.43240 * 22 21 20 46 46 H 1.09001 * 110.48388 * 143.47519 * 23 22 21 47 47 H 1.08999 * 110.49255 * 266.12124 * 23 22 21 48 48 H 1.08997 * 109.06019 * 162.26294 * 26 18 17 49 49 H 1.09006 * 109.05487 * 43.35292 * 26 18 17 50 50 H 1.08999 * 108.79078 * 182.20924 * 27 26 18 51 51 H 1.09000 * 108.79293 * 300.54558 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0572 2.4766 6 1 1.0806 0.9747 2.3756 7 6 1.9931 -0.4016 3.7283 8 7 2.6762 -1.5186 3.8513 9 14 1.4995 0.5637 5.2495 10 1 0.1723 0.0956 5.7237 11 1 2.5091 0.3538 6.3181 12 1 1.4246 2.0089 4.9162 13 6 2.0401 -0.7213 -1.2491 14 7 1.6514 0.0373 -2.4456 15 6 2.3565 1.2942 -2.5124 16 6 1.4530 2.4362 -3.0157 17 6 0.5413 1.9919 -4.1785 18 6 1.2479 1.1198 -5.1805 19 1 2.3120 1.3559 -5.1839 20 7 0.6871 1.3510 -6.5140 21 6 1.4620 1.8225 -7.6679 22 6 0.4171 2.3269 -8.6877 23 6 -0.8313 1.5042 -8.2931 24 6 -0.6020 1.1532 -6.8396 25 8 -1.4572 0.7539 -6.0780 26 6 1.0472 -0.3600 -4.7841 27 6 1.9142 -0.7407 -3.6745 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6053 -1.7198 1.2953 32 1 3.1263 -0.7994 1.2057 33 1 2.9241 -1.8411 4.7319 34 1 1.6054 -1.7198 -1.2950 35 1 3.1263 -0.7996 -1.2055 36 1 2.7262 1.5466 -1.5186 37 1 3.2041 1.1897 -3.1897 38 1 0.8303 2.7837 -2.1913 39 1 2.0807 3.2598 -3.3555 40 1 -0.3055 1.4407 -3.7693 41 1 0.1658 2.8789 -4.6885 42 1 2.1230 2.6368 -7.3711 43 1 2.0401 1.0028 -8.0944 44 1 0.2356 3.3946 -8.5646 45 1 0.7272 2.1011 -9.7080 46 1 -1.7346 2.1039 -8.4057 47 1 -0.8967 0.5977 -8.8948 48 1 1.2706 -0.9921 -5.6434 49 1 0.0080 -0.5125 -4.4923 50 1 1.7647 -1.7987 -3.4591 51 1 2.9518 -0.5865 -3.9708 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602693087.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:12:32 Heat of formation + Delta-G solvation = -43.261226 kcal Electronic energy + Delta-G solvation = -26753.853726 eV Core-core repulsion = 23266.379903 eV Total energy + Delta-G solvation = -3487.473822 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.84774 -38.99024 -36.54356 -35.78117 -33.81828 -32.50204 -32.04100 -30.51934 -27.84127 -27.18747 -26.45488 -24.80625 -24.61901 -22.53089 -22.24691 -21.22470 -20.02788 -19.02982 -18.47834 -17.07881 -16.81778 -16.33684 -15.78621 -15.13900 -15.03026 -14.67627 -14.42146 -14.31781 -13.95323 -13.85460 -13.79995 -13.27776 -13.04488 -12.91819 -12.67666 -12.49386 -12.23617 -11.97184 -11.81536 -11.54093 -11.44096 -11.36381 -11.12464 -10.95166 -10.91523 -10.79022 -10.67831 -10.54956 -10.23872 -10.22821 -10.17122 -9.72427 -9.55219 -9.07214 -8.91163 -8.82431 -8.29332 -7.96404 -5.94373 -3.95083 2.47682 2.79627 3.35463 3.41549 3.44927 4.05009 4.12030 4.13140 4.42592 4.51327 4.60454 4.73722 4.92987 5.06440 5.10949 5.14873 5.21583 5.30966 5.33573 5.36296 5.41439 5.43319 5.46013 5.55500 5.58165 5.63303 5.77013 5.84799 5.95220 6.00317 6.09535 6.18100 6.24863 6.30584 6.35161 6.45892 6.48451 6.56553 6.63629 6.79085 7.03317 7.08854 7.24916 7.27789 7.45781 7.55335 7.73788 7.90077 8.06345 8.07966 8.50826 9.11393 9.68101 11.17198 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.032835 B = 0.002626 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.552699 B =10660.078551 C =10774.740662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.080 4.080 3 H 0.056 0.944 4 C 0.027 3.973 5 C -0.510 4.510 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.062 3.938 14 N -0.524 5.524 15 C 0.049 3.951 16 C -0.104 4.104 17 C -0.116 4.116 18 C 0.166 3.834 19 H 0.083 0.917 20 N -0.618 5.618 21 C 0.101 3.899 22 C -0.132 4.132 23 C -0.157 4.157 24 C 0.513 3.487 25 O -0.522 6.522 26 C -0.121 4.121 27 C 0.057 3.943 28 H 0.052 0.948 29 H 0.043 0.957 30 H 0.038 0.962 31 H 0.015 0.985 32 H 0.011 0.989 33 H 0.259 0.741 34 H 0.068 0.932 35 H 0.028 0.972 36 H 0.076 0.924 37 H 0.032 0.968 38 H 0.068 0.932 39 H 0.054 0.946 40 H 0.080 0.920 41 H 0.051 0.949 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.088 0.912 46 H 0.099 0.901 47 H 0.101 0.899 48 H 0.060 0.940 49 H 0.084 0.916 50 H 0.070 0.930 51 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.491 7.246 -27.632 28.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.098 4.098 3 H 0.074 0.926 4 C -0.011 4.011 5 C -0.548 4.548 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.065 4.065 14 N -0.248 5.248 15 C -0.080 4.080 16 C -0.143 4.143 17 C -0.155 4.155 18 C 0.064 3.936 19 H 0.101 0.899 20 N -0.352 5.352 21 C -0.022 4.022 22 C -0.170 4.170 23 C -0.198 4.198 24 C 0.300 3.700 25 O -0.398 6.398 26 C -0.160 4.160 27 C -0.071 4.071 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.034 0.966 32 H 0.030 0.970 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.046 0.954 36 H 0.094 0.906 37 H 0.050 0.950 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.070 0.930 42 H 0.095 0.905 43 H 0.088 0.912 44 H 0.100 0.900 45 H 0.107 0.893 46 H 0.118 0.882 47 H 0.119 0.881 48 H 0.079 0.921 49 H 0.103 0.897 50 H 0.088 0.912 51 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -1.343 6.996 -26.986 27.910 hybrid contribution 0.799 0.266 0.815 1.172 sum -0.544 7.262 -26.171 27.165 Atomic orbital electron populations 1.21568 0.95713 1.00469 1.00147 1.21234 0.96031 0.98930 0.93647 0.92605 1.19130 0.95813 0.95593 0.90522 1.21236 1.34398 1.08238 0.90973 0.92595 1.25018 0.95377 0.95121 0.99073 1.69965 1.39184 1.21308 1.23299 0.86642 0.78221 0.80442 0.82986 1.20720 1.21358 1.19935 1.22397 0.97453 0.97194 0.89493 1.61619 1.57754 1.03733 1.01670 1.21985 0.94210 0.90613 1.01218 1.21885 0.98010 0.96733 0.97628 1.21541 0.99921 0.98794 0.95234 1.20755 0.97332 0.95693 0.79808 0.89922 1.48582 1.09575 1.66639 1.10452 1.22071 0.94608 0.99331 0.86211 1.22585 0.94338 1.00554 0.99474 1.22354 1.00199 1.02327 0.94898 1.20846 0.82188 0.77053 0.89871 1.90752 1.46884 1.45738 1.56404 1.20928 1.02978 0.94722 0.97370 1.20934 0.97028 0.98359 0.90767 0.92942 0.93809 0.94307 0.96617 0.97026 0.93151 0.91315 0.95382 0.90615 0.95007 0.91306 0.92734 0.90157 0.92984 0.90460 0.91248 0.90039 0.89304 0.88229 0.88077 0.92120 0.89743 0.91175 0.95141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.46 8.89 37.16 0.33 -2.13 16 2 C -0.08 -1.65 2.26 -90.62 -0.21 -1.86 16 3 H 0.06 1.17 6.38 -51.93 -0.33 0.84 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.45 8.41 -34.44 -0.29 -14.74 16 6 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 9 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.06 1.08 4.16 -3.83 -0.02 1.06 16 14 N -0.52 -7.81 3.67 -239.56 -0.88 -8.69 16 15 C 0.05 0.66 4.85 -4.67 -0.02 0.64 16 16 C -0.10 -1.28 6.15 -25.50 -0.16 -1.44 16 17 C -0.12 -1.46 4.34 -27.32 -0.12 -1.58 16 18 C 0.17 1.81 2.43 -68.41 -0.17 1.65 16 19 H 0.08 0.81 7.08 -51.93 -0.37 0.45 16 20 N -0.62 -5.94 2.72 -165.39 -0.45 -6.39 16 21 C 0.10 0.58 7.30 -3.12 -0.02 0.56 16 22 C -0.13 -0.57 7.18 -25.10 -0.18 -0.75 16 23 C -0.16 -1.06 6.86 -26.74 -0.18 -1.24 16 24 C 0.51 5.81 7.42 -10.86 -0.08 5.73 16 25 O -0.52 -8.27 16.20 5.56 0.09 -8.18 16 26 C -0.12 -1.47 4.57 -29.31 -0.13 -1.61 16 27 C 0.06 0.73 4.96 -6.70 -0.03 0.69 16 28 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 29 H 0.04 0.82 7.75 -51.93 -0.40 0.42 16 30 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.07 1.22 7.78 -51.93 -0.40 0.81 16 35 H 0.03 0.49 8.09 -51.93 -0.42 0.07 16 36 H 0.08 1.15 5.90 -51.93 -0.31 0.85 16 37 H 0.03 0.39 6.50 -51.93 -0.34 0.05 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 1.25 7.25 -51.93 -0.38 0.88 16 41 H 0.05 0.64 7.94 -51.93 -0.41 0.23 16 42 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 46 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 49 H 0.08 1.27 6.86 -51.93 -0.36 0.92 16 50 H 0.07 0.90 7.58 -51.93 -0.39 0.51 16 51 H 0.03 0.36 7.23 -51.93 -0.38 -0.02 16 LS Contribution 382.79 15.07 5.77 5.77 Total: -1.00 -32.60 382.79 -10.68 -43.28 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -9.42 Total: -3.26 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -1.50 Total: -12.96 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: -0.59 Total: -41.62 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: 0.09 Total: -8.18 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.60 -10.68 -43.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602693087.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.014 kcal (2) G-P(sol) polarization free energy of solvation -32.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds