Wall clock time and date at job start Fri Apr 10 2020 22:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47035 * 2 1 4 4 C 1.53005 * 109.46789 * 119.99920 * 2 1 3 5 5 C 1.50696 * 109.46765 * 294.99846 * 4 2 1 6 6 H 1.08002 * 120.00473 * 0.02562 * 5 4 2 7 7 C 1.37886 * 119.99934 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99661 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00104 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47201 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47439 * 119.99938 * 9 7 5 12 12 H 1.48506 * 109.47155 * 239.99861 * 9 7 5 13 13 C 1.52997 * 109.47202 * 239.99387 * 2 1 3 14 14 N 1.46909 * 109.46935 * 63.92481 * 13 2 1 15 15 C 1.47944 * 110.99844 * 203.24694 * 14 13 2 16 16 C 1.53916 * 113.32944 * 192.18422 * 15 14 13 17 17 C 1.50537 * 112.94487 * 317.75845 * 16 15 14 18 18 C 1.54516 * 108.86785 * 91.74668 * 17 16 15 19 19 H 1.08996 * 108.98538 * 43.30170 * 18 17 16 20 20 N 1.46504 * 109.03930 * 162.21264 * 18 17 16 21 21 C 1.46768 * 124.34970 * 242.15673 * 20 18 17 22 22 C 1.54479 * 105.47379 * 196.99468 * 21 20 18 23 23 C 1.54781 * 101.69373 * 334.39417 * 22 21 20 24 24 C 1.34417 * 124.35235 * 62.13560 * 20 18 17 25 25 O 1.21287 * 124.93922 * 359.57994 * 24 20 18 26 26 C 1.45874 * 111.66970 * 282.77114 * 18 17 16 27 27 C 1.44304 * 111.00154 * 75.83791 * 14 13 2 28 28 H 1.09000 * 109.46837 * 185.41441 * 1 2 3 29 29 H 1.08993 * 109.46983 * 305.41684 * 1 2 3 30 30 H 1.09003 * 109.46697 * 65.41618 * 1 2 3 31 31 H 1.08998 * 109.47534 * 54.99932 * 4 2 1 32 32 H 1.09003 * 109.46852 * 175.00159 * 4 2 1 33 33 H 0.96998 * 119.99266 * 179.97438 * 8 7 5 34 34 H 1.08998 * 109.47816 * 303.92597 * 13 2 1 35 35 H 1.09002 * 109.47522 * 183.92146 * 13 2 1 36 36 H 1.08999 * 108.71298 * 313.18517 * 15 14 13 37 37 H 1.09002 * 108.70712 * 71.32111 * 15 14 13 38 38 H 1.09004 * 108.78499 * 78.65344 * 16 15 14 39 39 H 1.09003 * 108.78957 * 196.97548 * 16 15 14 40 40 H 1.09007 * 109.56631 * 331.93292 * 17 16 15 41 41 H 1.08993 * 109.57041 * 211.56673 * 17 16 15 42 42 H 1.08999 * 110.24293 * 315.99888 * 21 20 18 43 43 H 1.09003 * 110.23931 * 77.99473 * 21 20 18 44 44 H 1.09002 * 110.96563 * 92.70478 * 22 21 20 45 45 H 1.08996 * 110.96549 * 216.42830 * 22 21 20 46 46 H 1.09007 * 110.61153 * 266.39974 * 23 22 21 47 47 H 1.08996 * 110.42921 * 143.70961 * 23 22 21 48 48 H 1.09000 * 108.84691 * 182.32042 * 26 18 17 49 49 H 1.09006 * 108.84556 * 300.67998 * 26 18 17 50 50 H 1.09003 * 109.69334 * 101.64324 * 27 14 13 51 51 H 1.08999 * 109.69518 * 341.05822 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0571 2.4765 6 1 1.0799 0.9743 2.3756 7 6 1.9931 -0.4016 3.7284 8 7 2.6762 -1.5187 3.8513 9 14 1.4983 0.5628 5.2496 10 1 0.7410 1.7740 4.8433 11 1 0.6449 -0.2868 6.1186 12 1 2.7161 0.9685 5.9964 13 6 2.0401 -0.7214 -1.2491 14 7 1.6293 0.0236 -2.4468 15 6 1.5935 -0.8588 -3.6337 16 6 1.4632 -0.0903 -4.9609 17 6 0.4745 1.0426 -4.8885 18 6 1.2227 2.3338 -4.4877 19 1 2.1548 2.3925 -5.0496 20 7 0.3899 3.4919 -4.8218 21 6 0.7684 4.5344 -5.7831 22 6 -0.1691 5.7264 -5.4888 23 6 -1.3903 5.0164 -4.8563 24 6 -0.8192 3.7361 -4.2877 25 8 -1.3739 3.0299 -3.4724 26 6 1.5245 2.3607 -3.0608 27 6 2.4417 1.2026 -2.6265 28 1 -0.3633 -1.0231 0.0970 29 1 -0.3633 0.5955 0.8375 30 1 -0.3633 0.4276 -0.9346 31 1 1.6054 -1.7198 1.2953 32 1 3.1263 -0.7995 1.2057 33 1 2.9240 -1.8411 4.7319 34 1 1.6205 -1.7267 -1.2850 35 1 3.1278 -0.7827 -1.2147 36 1 2.5102 -1.4479 -3.6592 37 1 0.7454 -1.5370 -3.5397 38 1 2.4396 0.3125 -5.2306 39 1 1.1434 -0.7841 -5.7384 40 1 -0.2870 0.8153 -4.1424 41 1 0.0047 1.1800 -5.8623 42 1 1.8079 4.8260 -5.6333 43 1 0.6186 4.1795 -6.8028 44 1 0.2911 6.4200 -4.7850 45 1 -0.4508 6.2376 -6.4093 46 1 -2.1411 4.7954 -5.6150 47 1 -1.8176 5.6290 -4.0625 48 1 2.0131 3.3053 -2.8220 49 1 0.5906 2.2986 -2.5021 50 1 3.1909 1.0186 -3.3965 51 1 2.9339 1.4561 -1.6875 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602693090.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:12:40 Heat of formation + Delta-G solvation = -43.695122 kcal Electronic energy + Delta-G solvation = -27006.897534 eV Core-core repulsion = 23519.404897 eV Total energy + Delta-G solvation = -3487.492637 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.83327 -38.80546 -36.46843 -35.80072 -33.89399 -32.55958 -31.68809 -30.47261 -27.75446 -27.09812 -26.30015 -25.14803 -24.41067 -22.39019 -22.19444 -21.27228 -19.64988 -19.01306 -18.74693 -17.08039 -16.73770 -16.32376 -15.71571 -15.17785 -14.93269 -14.61093 -14.34455 -14.23076 -13.90431 -13.76911 -13.41125 -13.27644 -13.12749 -12.90573 -12.78425 -12.56588 -12.18368 -11.80760 -11.73673 -11.41334 -11.35436 -11.20735 -11.17350 -11.02326 -10.85886 -10.77102 -10.61464 -10.58610 -10.45567 -10.18576 -10.11666 -9.57222 -9.51381 -8.99861 -8.86618 -8.76169 -8.25862 -7.75450 -5.90883 -3.90981 2.58971 2.85779 3.36970 3.44307 3.49651 4.13141 4.19239 4.19953 4.49804 4.55103 4.61427 4.79181 4.85929 5.04413 5.13629 5.17473 5.20905 5.25469 5.38296 5.41521 5.45128 5.51409 5.55046 5.56974 5.65946 5.72739 5.76142 5.81164 5.97986 6.00068 6.12781 6.15216 6.21952 6.29720 6.35294 6.48116 6.53666 6.69216 6.73883 6.89281 7.11152 7.16804 7.34363 7.37238 7.57116 7.65717 7.78773 7.95650 8.10656 8.18621 8.56051 9.15958 9.72071 11.20827 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.016792 B = 0.003325 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.077144 B = 8418.512063 C = 9482.417599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.077 4.077 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.508 4.508 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.899 5.899 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.066 3.934 14 N -0.543 5.543 15 C 0.062 3.938 16 C -0.114 4.114 17 C -0.120 4.120 18 C 0.173 3.827 19 H 0.074 0.926 20 N -0.621 5.621 21 C 0.102 3.898 22 C -0.132 4.132 23 C -0.158 4.158 24 C 0.512 3.488 25 O -0.515 6.515 26 C -0.137 4.137 27 C 0.073 3.927 28 H 0.036 0.964 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.015 0.985 32 H 0.011 0.989 33 H 0.258 0.742 34 H 0.065 0.935 35 H 0.029 0.971 36 H 0.028 0.972 37 H 0.070 0.930 38 H 0.055 0.945 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.055 0.945 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.101 0.899 47 H 0.099 0.901 48 H 0.056 0.944 49 H 0.095 0.905 50 H 0.034 0.966 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.251 11.531 -25.258 27.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.096 4.096 3 H 0.072 0.928 4 C -0.011 4.011 5 C -0.546 4.546 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.716 3.284 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.061 4.061 14 N -0.267 5.267 15 C -0.065 4.065 16 C -0.152 4.152 17 C -0.158 4.158 18 C 0.072 3.928 19 H 0.092 0.908 20 N -0.356 5.356 21 C -0.021 4.021 22 C -0.170 4.170 23 C -0.198 4.198 24 C 0.299 3.701 25 O -0.390 6.390 26 C -0.176 4.176 27 C -0.056 4.056 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.033 0.967 32 H 0.029 0.971 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.108 0.892 41 H 0.074 0.926 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.100 0.900 45 H 0.106 0.894 46 H 0.119 0.881 47 H 0.118 0.882 48 H 0.074 0.926 49 H 0.114 0.886 50 H 0.053 0.947 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.876 11.131 -24.623 27.175 hybrid contribution 0.745 0.208 0.710 1.050 sum -2.131 11.339 -23.913 26.551 Atomic orbital electron populations 1.21554 0.95714 1.00342 1.00224 1.21179 0.96027 0.98871 0.93488 0.92829 1.19142 0.95753 0.95543 0.90644 1.21299 1.34117 1.08217 0.90974 0.92538 1.25022 0.95440 0.95116 0.99061 1.69983 1.39432 1.21330 1.23131 0.86591 0.78202 0.80211 0.83352 1.19726 1.21117 1.21185 1.22307 0.97161 0.97092 0.89526 1.60693 1.55376 1.07566 1.03102 1.22372 1.00281 0.94647 0.89197 1.21303 0.99235 0.97723 0.96982 1.21648 0.99239 0.93227 1.01708 1.20000 0.92257 0.83848 0.96736 0.90785 1.48606 1.19292 1.24811 1.42933 1.22051 0.99610 0.87628 0.92832 1.22611 0.95289 0.96993 1.02091 1.22384 0.98902 0.96034 1.02468 1.20844 0.81235 0.87033 0.80966 1.90784 1.63148 1.52700 1.32370 1.20928 1.02953 0.97981 0.95746 1.21630 0.93139 0.90381 1.00492 0.94467 0.93294 0.93371 0.96677 0.97098 0.93264 0.91683 0.95274 0.95334 0.91198 0.92618 0.91516 0.89184 0.92580 0.90606 0.91390 0.89990 0.89417 0.88119 0.88228 0.92575 0.88643 0.94740 0.90503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.59 8.86 37.16 0.33 -2.26 16 2 C -0.08 -1.66 2.35 -90.62 -0.21 -1.87 16 3 H 0.05 1.19 6.96 -51.93 -0.36 0.83 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.73 8.48 -34.44 -0.29 -15.02 16 6 H 0.06 1.62 7.06 -52.49 -0.37 1.25 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.66 13.29 55.43 0.74 -26.93 16 9 Si 0.89 22.37 29.54 -169.99 -5.02 17.35 16 10 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 C 0.07 1.19 4.18 -3.82 -0.02 1.18 16 14 N -0.54 -8.36 3.25 -234.63 -0.76 -9.13 16 15 C 0.06 0.80 5.29 -2.77 -0.01 0.79 16 16 C -0.11 -1.19 5.27 -27.48 -0.14 -1.34 16 17 C -0.12 -1.40 4.67 -27.17 -0.13 -1.52 16 18 C 0.17 1.92 2.29 -70.51 -0.16 1.76 16 19 H 0.07 0.69 7.50 -51.93 -0.39 0.30 16 20 N -0.62 -6.35 2.77 -167.80 -0.46 -6.81 16 21 C 0.10 0.64 7.29 -3.12 -0.02 0.61 16 22 C -0.13 -0.67 7.19 -25.02 -0.18 -0.85 16 23 C -0.16 -1.22 6.87 -26.66 -0.18 -1.40 16 24 C 0.51 6.31 7.39 -10.86 -0.08 6.23 16 25 O -0.52 -8.83 15.54 5.55 0.09 -8.74 16 26 C -0.14 -1.86 4.61 -29.59 -0.14 -1.99 16 27 C 0.07 1.03 5.04 -4.70 -0.02 1.01 16 28 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.05 1.11 7.11 -51.93 -0.37 0.74 16 30 H 0.05 0.98 7.57 -51.93 -0.39 0.59 16 31 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.06 1.18 7.89 -51.93 -0.41 0.77 16 35 H 0.03 0.53 7.98 -51.93 -0.41 0.11 16 36 H 0.03 0.36 8.02 -51.93 -0.42 -0.06 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.53 6.66 -51.93 -0.35 0.19 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 1.37 7.23 -51.93 -0.38 0.99 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 46 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.10 1.65 6.53 -51.93 -0.34 1.31 16 50 H 0.03 0.43 6.79 -51.93 -0.35 0.07 16 51 H 0.08 1.20 6.55 -51.93 -0.34 0.86 16 LS Contribution 383.40 15.07 5.78 5.78 Total: -1.00 -33.42 383.40 -10.64 -44.06 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -9.51 Total: -2.97 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -1.49 Total: -12.61 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: -0.49 Total: -42.87 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.09 Total: -8.74 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.42 -10.64 -44.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602693090.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.363 kcal (2) G-P(sol) polarization free energy of solvation -33.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds