Wall clock time and date at job start Fri Apr 10 2020 22:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46898 * 111.00009 * 2 1 4 4 C 1.46898 * 110.99836 * 123.94890 * 2 1 3 5 5 H 1.09001 * 109.49628 * 54.94342 * 4 2 1 6 6 C 1.53031 * 109.52011 * 294.87604 * 4 2 1 7 7 C 1.52944 * 109.40315 * 179.72014 * 6 4 2 8 8 C 1.52332 * 109.42568 * 60.25850 * 7 6 4 9 9 H 1.08996 * 109.71832 * 60.85170 * 8 7 6 10 10 C 1.53053 * 109.88841 * 300.23412 * 8 7 6 11 11 H 1.09002 * 109.37941 * 179.20849 * 10 8 7 12 12 C 1.52797 * 109.58709 * 59.31093 * 10 8 7 13 13 O 1.42935 * 109.27275 * 298.91044 * 10 8 7 14 14 C 1.43058 * 113.60742 * 300.99136 * 13 10 8 15 15 C 1.53070 * 109.35463 * 58.33872 * 14 13 10 16 16 N 1.47023 * 109.37187 * 303.45190 * 15 14 13 17 17 C 1.46904 * 111.00131 * 182.37420 * 16 15 14 18 18 C 1.52998 * 109.47343 * 46.63169 * 17 16 15 19 19 C 1.50695 * 115.54824 * 34.32801 * 18 17 16 20 20 H 1.07997 * 120.00503 * 0.02562 * 19 18 17 21 21 C 1.37886 * 120.00042 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99651 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00021 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47079 * 60.00108 * 23 21 19 25 25 H 1.48497 * 109.46860 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47392 * 300.00262 * 23 21 19 27 27 C 1.52999 * 117.49876 * 248.62459 * 18 17 16 28 28 C 1.52995 * 117.49898 * 180.02562 * 18 17 16 29 29 H 1.09003 * 109.47462 * 296.05373 * 1 2 3 30 30 H 1.09004 * 109.47019 * 56.05323 * 1 2 3 31 31 H 1.08999 * 109.47314 * 176.05100 * 1 2 3 32 32 H 1.09002 * 109.47192 * 183.95125 * 3 2 1 33 33 H 1.09006 * 109.46647 * 303.94901 * 3 2 1 34 34 H 1.09000 * 109.47178 * 63.94890 * 3 2 1 35 35 H 1.08999 * 109.48221 * 299.69867 * 6 4 2 36 36 H 1.09002 * 109.48223 * 59.74554 * 6 4 2 37 37 H 1.09000 * 109.45151 * 180.30815 * 7 6 4 38 38 H 1.09006 * 109.44721 * 300.25199 * 7 6 4 39 39 H 1.08997 * 109.43501 * 60.78112 * 12 10 8 40 40 H 1.09003 * 109.43617 * 180.66311 * 12 10 8 41 41 H 1.09004 * 109.49090 * 178.30185 * 14 13 10 42 42 H 1.08996 * 109.49312 * 298.37340 * 14 13 10 43 43 H 1.09002 * 109.48759 * 183.48107 * 15 14 13 44 44 H 1.09007 * 109.50652 * 63.43269 * 15 14 13 45 45 H 1.08999 * 109.47301 * 166.63209 * 17 16 15 46 46 H 1.09008 * 109.46968 * 286.63201 * 17 16 15 47 47 H 0.97001 * 119.99677 * 179.97438 * 22 21 19 48 48 H 1.09009 * 117.50014 * 0.02562 * 27 18 17 49 49 H 1.08999 * 117.50118 * 145.01873 * 27 18 17 50 50 H 1.09001 * 117.49851 * 214.97287 * 28 18 17 51 51 H 1.08998 * 117.50366 * 0.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 1 1.5748 -1.7714 1.1251 6 6 1.6122 -0.0684 2.4448 7 6 2.1555 -0.8716 3.6275 8 6 3.6732 -0.9565 3.5278 9 1 4.1005 0.0456 3.5608 10 6 4.0714 -1.6427 2.2190 11 1 5.1584 -1.6865 2.1497 12 6 3.5196 -0.8488 1.0358 13 8 3.5415 -2.9701 2.2020 14 6 3.9946 -3.7818 3.2893 15 6 3.6109 -3.1164 4.6134 16 7 4.1720 -1.7582 4.6571 17 6 3.8723 -1.1058 5.9388 18 6 4.1762 -2.0714 7.0860 19 6 5.3457 -2.9956 6.8649 20 1 5.9061 -2.9466 5.9431 21 6 5.7003 -3.9041 7.8397 22 7 5.0176 -3.9642 8.9622 23 14 7.1505 -5.0493 7.5660 24 1 8.3826 -4.2468 7.3581 25 1 7.3226 -5.9227 8.7546 26 1 6.8987 -5.8891 6.3675 27 6 2.9903 -2.6112 7.8879 28 6 3.9270 -1.5753 8.5117 29 1 -0.3634 0.4514 0.9232 30 1 -0.3633 0.5739 -0.8525 31 1 -0.3634 -1.0252 -0.0708 32 1 3.0828 1.3432 -0.0708 33 1 1.5898 1.9162 -0.8526 34 1 1.7043 1.8724 0.9232 35 1 2.0384 0.9347 2.4601 36 1 0.5266 -0.0036 2.5175 37 1 1.8783 -0.3784 4.5592 38 1 1.7327 -1.8762 3.6089 39 1 3.9392 0.1571 1.0467 40 1 3.7946 -1.3460 0.1055 41 1 3.5283 -4.7652 3.2280 42 1 5.0780 -3.8888 3.2366 43 1 4.0086 -3.7011 5.4429 44 1 2.5250 -3.0640 4.6932 45 1 4.4869 -0.2118 6.0439 46 1 2.8186 -0.8277 5.9673 47 1 5.2669 -4.6035 9.6478 48 1 1.9935 -2.2787 7.5980 49 1 3.0558 -3.6351 8.2558 50 1 4.6089 -1.9176 9.2901 51 1 3.5461 -0.5612 8.6324 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602796011.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:13:08 Heat of formation + Delta-G solvation = -3.539745 kcal Electronic energy + Delta-G solvation = -28197.880961 eV Core-core repulsion = 24712.129591 eV Total energy + Delta-G solvation = -3485.751369 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.77860 -39.39528 -38.46671 -36.36269 -34.90815 -33.52323 -31.52811 -30.44540 -29.27017 -28.43911 -27.62295 -25.78682 -24.90098 -23.90473 -23.27933 -22.60886 -21.14149 -20.58565 -19.62711 -18.15731 -17.30987 -17.13890 -16.92639 -16.71735 -16.41040 -15.87168 -15.57598 -15.37920 -15.25691 -14.94043 -14.42774 -14.41661 -14.38555 -14.11504 -13.70059 -13.33929 -13.05417 -12.94875 -12.89525 -12.79956 -12.71082 -12.59685 -12.50951 -12.30956 -12.08688 -11.99301 -11.88523 -11.80643 -11.73427 -11.41272 -11.21154 -11.05804 -10.65871 -10.44604 -10.19262 -9.99992 -9.16487 -8.92927 -7.94857 -6.01022 1.45954 1.47531 1.53998 2.47500 2.86065 2.94180 3.08392 3.18708 3.70773 3.77482 3.91012 4.01808 4.06175 4.19709 4.22120 4.33694 4.35282 4.38211 4.42106 4.48156 4.51714 4.59975 4.62182 4.64926 4.69945 4.74326 4.76974 4.82567 4.83370 4.92777 4.96803 5.02838 5.06961 5.10494 5.12909 5.15192 5.21574 5.25703 5.30365 5.39327 5.44339 5.49476 5.67364 5.97393 6.13208 6.17928 6.19377 6.23285 6.31338 6.45210 6.61078 7.00731 7.53206 8.99281 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.024124 B = 0.004031 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.409331 B = 6944.076543 C = 7557.037946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.550 5.550 3 C 0.014 3.986 4 C 0.096 3.904 5 H 0.070 0.930 6 C -0.135 4.135 7 C -0.136 4.136 8 C 0.053 3.947 9 H 0.091 0.909 10 C 0.103 3.897 11 H 0.061 0.939 12 C -0.092 4.092 13 O -0.388 6.388 14 C 0.070 3.930 15 C 0.016 3.984 16 N -0.519 5.519 17 C 0.108 3.892 18 C 0.016 3.984 19 C -0.461 4.461 20 H 0.070 0.930 21 C 0.010 3.990 22 N -0.905 5.905 23 Si 0.948 3.052 24 H -0.277 1.277 25 H -0.293 1.293 26 H -0.269 1.269 27 C -0.187 4.187 28 C -0.192 4.192 29 H 0.028 0.972 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.030 0.970 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.104 0.896 42 H 0.051 0.949 43 H 0.103 0.897 44 H 0.021 0.979 45 H 0.061 0.939 46 H 0.024 0.976 47 H 0.254 0.746 48 H 0.051 0.949 49 H 0.081 0.919 50 H 0.082 0.918 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.410 8.326 -16.655 19.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.272 5.272 3 C -0.134 4.134 4 C -0.013 4.013 5 H 0.089 0.911 6 C -0.175 4.175 7 C -0.176 4.176 8 C -0.056 4.056 9 H 0.109 0.891 10 C 0.045 3.955 11 H 0.079 0.921 12 C -0.130 4.130 13 O -0.307 6.307 14 C -0.007 4.007 15 C -0.112 4.112 16 N -0.242 5.242 17 C -0.020 4.020 18 C 0.016 3.984 19 C -0.498 4.498 20 H 0.088 0.912 21 C -0.188 4.188 22 N -0.544 5.544 23 Si 0.775 3.225 24 H -0.203 1.203 25 H -0.219 1.219 26 H -0.194 1.194 27 C -0.225 4.225 28 C -0.230 4.230 29 H 0.047 0.953 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.049 0.951 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.111 0.889 40 H 0.097 0.903 41 H 0.122 0.878 42 H 0.069 0.931 43 H 0.121 0.879 44 H 0.039 0.961 45 H 0.080 0.920 46 H 0.042 0.958 47 H 0.063 0.937 48 H 0.069 0.931 49 H 0.100 0.900 50 H 0.101 0.899 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.848 7.882 -17.129 19.742 hybrid contribution -0.394 -0.298 1.897 1.960 sum -6.242 7.584 -15.232 18.125 Atomic orbital electron populations 1.22427 0.86999 1.02317 1.00956 1.62281 1.08478 1.14654 1.41808 1.22542 1.01437 0.88422 1.00980 1.21518 0.95175 0.97090 0.87482 0.91131 1.22049 1.00611 0.99707 0.95084 1.21835 0.96981 1.00410 0.98350 1.22346 0.93404 0.97960 0.91849 0.89072 1.22051 0.97279 0.82495 0.93707 0.92071 1.21510 0.94620 1.00114 0.96746 1.87897 1.71513 1.23453 1.47821 1.22643 0.99191 0.94078 0.84784 1.22948 0.96503 0.91618 1.00088 1.62377 1.57903 1.02165 1.01777 1.21511 0.96702 0.95746 0.88010 1.19157 0.94824 0.96484 0.87968 1.20775 1.11692 1.15625 1.01737 0.91156 1.25688 0.98838 0.99127 0.95168 1.70169 1.40521 1.36503 1.07212 0.85756 0.80465 0.79010 0.77237 1.20263 1.21944 1.19450 1.22703 0.91968 0.99346 1.08473 1.22693 1.04351 0.94891 1.01077 0.95343 0.90238 0.91826 0.90633 0.90560 0.95099 0.90900 0.91970 0.92828 0.92747 0.88892 0.90277 0.87843 0.93101 0.87927 0.96118 0.92028 0.95767 0.93663 0.93055 0.90016 0.89942 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.31 127.69 1.19 1.54 16 2 N -0.55 -10.41 5.01 -923.24 -4.62 -15.03 16 3 C 0.01 0.21 8.81 127.69 1.13 1.34 16 4 C 0.10 2.09 2.10 44.92 0.09 2.18 16 5 H 0.07 1.85 7.72 -2.39 -0.02 1.83 16 6 C -0.13 -2.96 4.50 30.59 0.14 -2.82 16 7 C -0.14 -3.79 4.34 30.35 0.13 -3.66 16 8 C 0.05 1.56 2.33 44.65 0.10 1.66 16 9 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 10 C 0.10 2.81 2.94 30.54 0.09 2.90 16 11 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 12 C -0.09 -1.98 4.73 30.52 0.14 -1.84 16 13 O -0.39 -11.92 9.30 -148.98 -1.38 -13.31 16 14 C 0.07 2.27 7.01 72.01 0.50 2.78 16 15 C 0.02 0.61 4.38 86.30 0.38 0.99 16 16 N -0.52 -19.01 4.05 -870.93 -3.53 -22.54 16 17 C 0.11 4.30 5.24 86.30 0.45 4.75 16 18 C 0.02 0.77 1.46 -52.93 -0.08 0.69 16 19 C -0.46 -23.68 6.40 25.60 0.16 -23.52 16 20 H 0.07 3.63 6.99 -2.91 -0.02 3.60 16 21 C 0.01 0.53 5.28 84.66 0.45 0.98 16 22 N -0.90 -49.93 8.59 21.45 0.18 -49.74 16 23 Si 0.95 42.55 29.54 68.60 2.03 44.58 16 24 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 25 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 27 C -0.19 -9.12 9.30 30.58 0.28 -8.84 16 28 C -0.19 -9.41 9.38 30.58 0.29 -9.12 16 29 H 0.03 0.47 6.44 -2.39 -0.02 0.45 16 30 H 0.08 1.07 8.12 -2.39 -0.02 1.05 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 1.08 6.33 -2.39 -0.02 1.06 16 33 H 0.08 0.97 8.12 -2.38 -0.02 0.95 16 34 H 0.03 0.47 6.29 -2.39 -0.02 0.45 16 35 H 0.07 1.47 6.41 -2.39 -0.02 1.45 16 36 H 0.06 1.34 6.52 -2.39 -0.02 1.32 16 37 H 0.05 1.59 6.25 -2.39 -0.01 1.57 16 38 H 0.05 1.73 5.85 -2.38 -0.01 1.71 16 39 H 0.09 1.68 6.42 -2.39 -0.02 1.67 16 40 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.10 3.02 8.14 -2.38 -0.02 3.00 16 42 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.10 4.63 4.81 -2.39 -0.01 4.62 16 44 H 0.02 0.80 6.24 -2.38 -0.01 0.78 16 45 H 0.06 2.41 8.14 -2.39 -0.02 2.40 16 46 H 0.02 0.94 5.66 -2.38 -0.01 0.92 16 47 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 48 H 0.05 2.31 8.05 -2.38 -0.02 2.29 16 49 H 0.08 4.47 6.28 -2.39 -0.01 4.46 16 50 H 0.08 4.54 6.29 -2.39 -0.02 4.53 16 51 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -55.97 357.56 -0.96 -56.93 By element: Atomic # 1 Polarization: 28.20 SS G_CDS: 0.91 Total: 29.11 kcal Atomic # 6 Polarization: -35.45 SS G_CDS: 5.46 Total: -29.99 kcal Atomic # 7 Polarization: -79.35 SS G_CDS: -7.97 Total: -87.32 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: -1.38 Total: -13.31 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -55.97 -0.96 -56.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602796011.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.389 kcal (2) G-P(sol) polarization free energy of solvation -55.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds