Wall clock time and date at job start Fri Apr 10 2020 22:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46907 * 109.46808 * 2 1 4 4 C 1.46897 * 110.99992 * 199.82362 * 3 2 1 5 5 C 1.50693 * 109.47067 * 66.05036 * 4 3 2 6 6 O 1.21287 * 120.00201 * 359.97438 * 5 4 3 7 7 N 1.34780 * 120.00196 * 179.97438 * 5 4 3 8 8 C 1.44576 * 118.63866 * 359.73705 * 7 5 4 9 9 C 1.54314 * 109.90855 * 270.84745 * 8 7 5 10 10 C 1.47094 * 110.29556 * 288.76485 * 9 8 7 11 11 C 1.52570 * 114.32595 * 62.73112 * 10 9 8 12 12 C 1.50878 * 109.35122 * 274.97690 * 11 10 9 13 13 C 1.47605 * 118.64546 * 179.97438 * 7 5 4 14 14 C 1.46908 * 110.99467 * 75.87253 * 3 2 1 15 15 C 1.53007 * 109.46752 * 199.39812 * 14 3 2 16 16 C 1.50700 * 115.54843 * 55.60987 * 15 14 3 17 17 H 1.08000 * 120.00370 * 264.72632 * 16 15 14 18 18 C 1.37880 * 119.99687 * 84.72797 * 16 15 14 19 19 N 1.31510 * 120.00314 * 357.83949 * 18 16 15 20 20 Si 1.86803 * 119.99684 * 177.83188 * 18 16 15 21 21 H 1.48507 * 109.46929 * 180.02562 * 20 18 16 22 22 H 1.48497 * 109.47191 * 300.00364 * 20 18 16 23 23 H 1.48501 * 109.46853 * 60.00658 * 20 18 16 24 24 C 1.52997 * 117.49468 * 201.28117 * 15 14 3 25 25 C 1.52998 * 117.49962 * 269.94110 * 15 14 3 26 26 H 1.08999 * 109.47529 * 64.45293 * 1 2 3 27 27 H 1.09004 * 109.47067 * 184.44661 * 1 2 3 28 28 H 1.08999 * 109.47552 * 304.44459 * 1 2 3 29 29 H 1.08999 * 109.47423 * 240.00740 * 2 1 3 30 30 H 1.08998 * 109.47331 * 120.00159 * 2 1 3 31 31 H 1.09001 * 109.46629 * 186.04897 * 4 3 2 32 32 H 1.09000 * 109.47056 * 306.04775 * 4 3 2 33 33 H 1.08994 * 109.45453 * 30.76298 * 8 7 5 34 34 H 1.09000 * 109.44804 * 150.68085 * 8 7 5 35 35 H 1.08993 * 109.40318 * 168.47103 * 9 8 7 36 36 H 1.09002 * 109.27854 * 48.97298 * 9 8 7 37 37 H 1.08999 * 108.51245 * 301.47297 * 10 9 8 38 38 H 1.09003 * 108.51145 * 183.98075 * 10 9 8 39 39 H 1.08998 * 109.48710 * 155.02143 * 11 10 9 40 40 H 1.08994 * 109.49283 * 34.94421 * 11 10 9 41 41 H 1.09007 * 109.37265 * 331.69788 * 12 11 10 42 42 H 1.09004 * 109.36897 * 212.08114 * 12 11 10 43 43 H 1.08994 * 108.94964 * 258.56004 * 13 7 5 44 44 H 1.09006 * 108.94480 * 17.27436 * 13 7 5 45 45 H 1.09001 * 109.47051 * 79.40373 * 14 3 2 46 46 H 1.08994 * 109.47051 * 319.39686 * 14 3 2 47 47 H 0.97006 * 120.00157 * 355.19513 * 19 18 16 48 48 H 1.09005 * 117.49484 * 215.00382 * 24 15 14 49 49 H 1.08997 * 117.50372 * 0.02562 * 24 15 14 50 50 H 1.09006 * 117.49396 * 359.97438 * 25 15 14 51 51 H 1.08993 * 117.49857 * 144.97451 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4114 1.4514 -0.4651 5 6 3.4760 1.0484 -1.9157 6 8 2.4625 0.7362 -2.5041 7 7 4.6602 1.0350 -2.5593 8 6 5.8490 1.4181 -1.8312 9 6 6.0683 2.9412 -1.9474 10 6 6.4939 3.2928 -3.3109 11 6 5.4657 2.9739 -4.3920 12 6 5.6171 1.5341 -4.8169 13 6 4.6890 0.6348 -3.9798 14 6 1.8794 1.9929 1.3301 15 6 1.9282 3.5168 1.2020 16 6 0.9211 4.1224 0.2586 17 1 1.1995 4.3394 -0.7620 18 6 -0.3559 4.3994 0.6986 19 7 -0.7079 4.0961 1.9289 20 14 -1.5861 5.2057 -0.4529 21 1 -2.8770 5.3958 0.2563 22 1 -1.0634 6.5248 -0.8907 23 1 -1.7959 4.3377 -1.6395 24 6 2.2977 4.3191 2.4513 25 6 3.2984 4.1905 1.3001 26 1 -0.3634 0.4432 -0.9272 27 1 -0.3633 -1.0246 0.0797 28 1 -0.3634 0.5812 0.8475 29 1 1.8934 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.7834 2.4700 -0.3540 32 1 4.0254 0.7737 0.1281 33 1 5.7328 1.1520 -0.7806 34 1 6.7118 0.8955 -2.2442 35 1 6.8359 3.2516 -1.2386 36 1 5.1368 3.4576 -1.7158 37 1 7.4129 2.7520 -3.5369 38 1 6.7086 4.3610 -3.3417 39 1 5.6272 3.6253 -5.2509 40 1 4.4621 3.1332 -3.9978 41 1 6.6510 1.2210 -4.6713 42 1 5.3577 1.4391 -5.8713 43 1 5.0364 -0.3959 -4.0502 44 1 3.6789 0.6960 -4.3852 45 1 2.6939 1.6559 1.9712 46 1 0.9261 1.6953 1.7668 47 1 -0.0930 3.6151 2.5047 48 1 1.8122 5.2851 2.5908 49 1 2.5064 3.7614 3.3642 50 1 4.1650 3.5479 1.4563 51 1 3.4715 5.0714 0.6821 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602827469.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:13:22 Heat of formation + Delta-G solvation = -9.400015 kcal Electronic energy + Delta-G solvation = -28056.822981 eV Core-core repulsion = 24570.817492 eV Total energy + Delta-G solvation = -3486.005490 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.31221 -38.10912 -37.14941 -35.23882 -33.82404 -32.84281 -31.70629 -30.31071 -27.95266 -26.66566 -25.45026 -24.78578 -24.03028 -21.87359 -21.30533 -20.67470 -20.39954 -19.20973 -18.61407 -17.06481 -16.51176 -16.27667 -15.70797 -14.88443 -14.60723 -14.54737 -14.41568 -13.86745 -13.76995 -13.59514 -13.47292 -13.18046 -13.09814 -12.69936 -12.41339 -12.27763 -12.09814 -11.80911 -11.64271 -11.26648 -11.18997 -11.09068 -10.95166 -10.77903 -10.75822 -10.65828 -10.62967 -10.51127 -10.42399 -10.20043 -9.98176 -9.48268 -9.15361 -8.51153 -8.40090 -8.35354 -8.11457 -7.42592 -6.13845 -3.83560 2.94469 3.11016 3.54878 3.59911 3.75765 4.42454 4.55450 4.68486 4.70504 4.76944 4.86952 4.95599 5.00696 5.18398 5.24506 5.35277 5.45763 5.51743 5.53019 5.60442 5.63561 5.68144 5.77392 5.84214 5.85507 5.88928 6.01196 6.03098 6.07023 6.08853 6.11465 6.17438 6.19035 6.30550 6.32516 6.35444 6.41963 6.55290 6.66422 6.73479 6.78255 6.91293 7.01132 7.30021 7.34917 7.47721 7.82912 7.95084 8.46783 8.53857 8.64809 9.08337 9.86275 11.25138 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.013803 B = 0.004874 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.124582 B = 5743.308936 C = 5979.114687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.054 3.946 3 N -0.492 5.492 4 C 0.041 3.959 5 C 0.513 3.487 6 O -0.515 6.515 7 N -0.614 5.614 8 C 0.113 3.887 9 C -0.144 4.144 10 C -0.113 4.113 11 C -0.119 4.119 12 C -0.128 4.128 13 C 0.113 3.887 14 C 0.098 3.902 15 C 0.035 3.965 16 C -0.534 4.534 17 H 0.049 0.951 18 C 0.026 3.974 19 N -0.916 5.916 20 Si 1.061 2.939 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.288 1.288 24 C -0.180 4.180 25 C -0.204 4.204 26 H 0.064 0.936 27 H 0.042 0.958 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.014 0.986 31 H 0.111 0.889 32 H 0.044 0.956 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.056 0.944 44 H 0.089 0.911 45 H 0.002 0.998 46 H 0.075 0.925 47 H 0.270 0.730 48 H 0.085 0.915 49 H 0.062 0.938 50 H 0.061 0.939 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.747 -6.824 -7.888 18.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.073 4.073 3 N -0.215 5.215 4 C -0.090 4.090 5 C 0.301 3.699 6 O -0.389 6.389 7 N -0.350 5.350 8 C -0.011 4.011 9 C -0.182 4.182 10 C -0.151 4.151 11 C -0.157 4.157 12 C -0.167 4.167 13 C -0.009 4.009 14 C -0.029 4.029 15 C 0.035 3.965 16 C -0.572 4.572 17 H 0.067 0.933 18 C -0.178 4.178 19 N -0.552 5.552 20 Si 0.890 3.110 21 H -0.211 1.211 22 H -0.219 1.219 23 H -0.214 1.214 24 C -0.218 4.218 25 C -0.241 4.241 26 H 0.083 0.917 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.032 0.968 31 H 0.129 0.871 32 H 0.061 0.939 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.075 0.925 44 H 0.107 0.893 45 H 0.020 0.980 46 H 0.093 0.907 47 H 0.081 0.919 48 H 0.103 0.897 49 H 0.081 0.919 50 H 0.079 0.921 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 13.342 -6.134 -8.624 17.030 hybrid contribution 2.340 -0.976 0.692 2.628 sum 15.682 -7.110 -7.931 18.957 Atomic orbital electron populations 1.21639 0.94760 0.99608 1.03452 1.22106 0.96964 0.89138 0.99133 1.61427 1.16042 1.16713 1.27350 1.22076 0.92390 1.02950 0.91593 1.20907 0.82565 0.76705 0.89685 1.90662 1.33690 1.46451 1.68057 1.47737 1.07479 1.68712 1.11026 1.21424 0.87908 0.95022 0.96760 1.21251 1.02890 0.96562 0.97540 1.20407 0.98457 1.01296 0.94917 1.21074 1.00600 0.95754 0.98248 1.21759 0.99698 0.95681 0.99513 1.21741 1.01816 0.96801 0.80529 1.21843 0.98849 0.95984 0.86267 1.19112 0.92796 0.88790 0.95848 1.21051 0.96368 1.42954 0.96870 0.93267 1.25570 0.97388 0.96534 0.98304 1.70746 1.39619 1.38056 1.06777 0.83664 0.76124 0.76011 0.75175 1.21122 1.21879 1.21408 1.22764 1.04193 1.02955 0.91898 1.22924 0.93580 1.03487 1.04137 0.91716 0.93866 0.92292 0.90872 0.96805 0.87088 0.93884 0.90528 0.90798 0.90839 0.90868 0.92607 0.92462 0.92080 0.91138 0.91868 0.90958 0.92549 0.89286 0.97952 0.90684 0.91870 0.89695 0.91901 0.92075 0.90341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 10.07 37.16 0.37 -2.29 16 2 C 0.05 1.03 5.19 -3.82 -0.02 1.01 16 3 N -0.49 -10.24 3.81 -236.07 -0.90 -11.14 16 4 C 0.04 0.72 3.76 -4.98 -0.02 0.70 16 5 C 0.51 8.83 7.14 -10.99 -0.08 8.75 16 6 O -0.51 -10.74 13.82 5.55 0.08 -10.67 16 7 N -0.61 -8.04 2.25 -172.88 -0.39 -8.43 16 8 C 0.11 1.16 5.13 -4.38 -0.02 1.14 16 9 C -0.14 -1.49 5.61 -28.88 -0.16 -1.65 16 10 C -0.11 -1.08 5.15 -29.79 -0.15 -1.23 16 11 C -0.12 -1.25 5.51 -28.02 -0.15 -1.41 16 12 C -0.13 -1.18 5.71 -27.29 -0.16 -1.34 16 13 C 0.11 1.32 6.11 -2.93 -0.02 1.30 16 14 C 0.10 2.15 4.65 -3.82 -0.02 2.13 16 15 C 0.04 0.85 0.84 -155.66 -0.13 0.72 16 16 C -0.53 -14.81 8.54 -34.44 -0.29 -15.10 16 17 H 0.05 1.44 7.81 -52.49 -0.41 1.03 16 18 C 0.03 0.73 5.41 -17.82 -0.10 0.64 16 19 N -0.92 -27.05 13.48 55.43 0.75 -26.30 16 20 Si 1.06 26.13 29.90 -169.99 -5.08 21.04 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 C -0.18 -4.08 8.65 -26.69 -0.23 -4.32 16 25 C -0.20 -4.24 8.43 -26.69 -0.23 -4.47 16 26 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 1.25 6.67 -51.93 -0.35 0.91 16 29 H 0.07 1.39 5.85 -51.93 -0.30 1.09 16 30 H 0.01 0.24 8.00 -51.93 -0.42 -0.17 16 31 H 0.11 1.98 4.66 -51.93 -0.24 1.74 16 32 H 0.04 0.66 7.29 -51.93 -0.38 0.28 16 33 H 0.08 0.76 6.25 -51.93 -0.32 0.44 16 34 H 0.07 0.61 8.06 -51.93 -0.42 0.19 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.97 7.28 -51.93 -0.38 0.59 16 37 H 0.06 0.45 7.36 -51.93 -0.38 0.07 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.96 7.48 -51.93 -0.39 0.57 16 41 H 0.06 0.50 7.32 -51.93 -0.38 0.12 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.09 1.24 6.96 -51.93 -0.36 0.88 16 45 H 0.00 0.05 7.96 -51.93 -0.41 -0.36 16 46 H 0.07 1.80 6.11 -51.93 -0.32 1.48 16 47 H 0.27 7.87 6.18 -40.82 -0.25 7.62 16 48 H 0.08 2.10 8.14 -51.93 -0.42 1.67 16 49 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 50 H 0.06 1.11 7.75 -51.93 -0.40 0.70 16 51 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 LS Contribution 380.88 15.07 5.74 5.74 Total: -1.00 -31.55 380.88 -10.35 -41.90 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -9.14 Total: 3.26 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -1.40 Total: -15.41 kcal Atomic # 7 Polarization: -45.33 SS G_CDS: -0.54 Total: -45.87 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.08 Total: -10.67 kcal Atomic # 14 Polarization: 26.13 SS G_CDS: -5.08 Total: 21.04 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.55 -10.35 -41.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602827469.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.504 kcal (2) G-P(sol) polarization free energy of solvation -31.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds