Wall clock time and date at job start Fri Apr 10 2020 22:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46907 * 109.46808 * 2 1 4 4 C 1.46897 * 110.99992 * 199.82362 * 3 2 1 5 5 C 1.50693 * 109.47067 * 66.05036 * 4 3 2 6 6 O 1.21287 * 120.00201 * 359.97438 * 5 4 3 7 7 N 1.34780 * 120.00196 * 179.97438 * 5 4 3 8 8 C 1.44576 * 118.63866 * 359.73705 * 7 5 4 9 9 C 1.54314 * 109.90855 * 270.84745 * 8 7 5 10 10 C 1.47094 * 110.29556 * 288.76485 * 9 8 7 11 11 C 1.52570 * 114.32595 * 62.73112 * 10 9 8 12 12 C 1.50878 * 109.35122 * 274.97690 * 11 10 9 13 13 C 1.47605 * 118.64546 * 179.97438 * 7 5 4 14 14 C 1.46908 * 110.99467 * 75.87253 * 3 2 1 15 15 C 1.53007 * 109.46752 * 199.39812 * 14 3 2 16 16 C 1.50700 * 115.54843 * 55.60987 * 15 14 3 17 17 H 1.08000 * 120.00370 * 264.72632 * 16 15 14 18 18 C 1.37880 * 119.99687 * 84.72797 * 16 15 14 19 19 N 1.31510 * 120.00314 * 357.83949 * 18 16 15 20 20 Si 1.86803 * 119.99684 * 177.83188 * 18 16 15 21 21 H 1.48507 * 109.46929 * 180.02562 * 20 18 16 22 22 H 1.48497 * 109.47191 * 300.00364 * 20 18 16 23 23 H 1.48501 * 109.46853 * 60.00658 * 20 18 16 24 24 C 1.52997 * 117.49468 * 201.28117 * 15 14 3 25 25 C 1.52998 * 117.49962 * 269.94110 * 15 14 3 26 26 H 1.08999 * 109.47529 * 64.45293 * 1 2 3 27 27 H 1.09004 * 109.47067 * 184.44661 * 1 2 3 28 28 H 1.08999 * 109.47552 * 304.44459 * 1 2 3 29 29 H 1.08999 * 109.47423 * 240.00740 * 2 1 3 30 30 H 1.08998 * 109.47331 * 120.00159 * 2 1 3 31 31 H 1.09001 * 109.46629 * 186.04897 * 4 3 2 32 32 H 1.09000 * 109.47056 * 306.04775 * 4 3 2 33 33 H 1.08994 * 109.45453 * 30.76298 * 8 7 5 34 34 H 1.09000 * 109.44804 * 150.68085 * 8 7 5 35 35 H 1.08993 * 109.40318 * 168.47103 * 9 8 7 36 36 H 1.09002 * 109.27854 * 48.97298 * 9 8 7 37 37 H 1.08999 * 108.51245 * 301.47297 * 10 9 8 38 38 H 1.09003 * 108.51145 * 183.98075 * 10 9 8 39 39 H 1.08998 * 109.48710 * 155.02143 * 11 10 9 40 40 H 1.08994 * 109.49283 * 34.94421 * 11 10 9 41 41 H 1.09007 * 109.37265 * 331.69788 * 12 11 10 42 42 H 1.09004 * 109.36897 * 212.08114 * 12 11 10 43 43 H 1.08994 * 108.94964 * 258.56004 * 13 7 5 44 44 H 1.09006 * 108.94480 * 17.27436 * 13 7 5 45 45 H 1.09001 * 109.47051 * 79.40373 * 14 3 2 46 46 H 1.08994 * 109.47051 * 319.39686 * 14 3 2 47 47 H 0.97006 * 120.00157 * 355.19513 * 19 18 16 48 48 H 1.09005 * 117.49484 * 215.00382 * 24 15 14 49 49 H 1.08997 * 117.50372 * 0.02562 * 24 15 14 50 50 H 1.09006 * 117.49396 * 359.97438 * 25 15 14 51 51 H 1.08993 * 117.49857 * 144.97451 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4114 1.4514 -0.4651 5 6 3.4760 1.0484 -1.9157 6 8 2.4625 0.7362 -2.5041 7 7 4.6602 1.0350 -2.5593 8 6 5.8490 1.4181 -1.8312 9 6 6.0683 2.9412 -1.9474 10 6 6.4939 3.2928 -3.3109 11 6 5.4657 2.9739 -4.3920 12 6 5.6171 1.5341 -4.8169 13 6 4.6890 0.6348 -3.9798 14 6 1.8794 1.9929 1.3301 15 6 1.9282 3.5168 1.2020 16 6 0.9211 4.1224 0.2586 17 1 1.1995 4.3394 -0.7620 18 6 -0.3559 4.3994 0.6986 19 7 -0.7079 4.0961 1.9289 20 14 -1.5861 5.2057 -0.4529 21 1 -2.8770 5.3958 0.2563 22 1 -1.0634 6.5248 -0.8907 23 1 -1.7959 4.3377 -1.6395 24 6 2.2977 4.3191 2.4513 25 6 3.2984 4.1905 1.3001 26 1 -0.3634 0.4432 -0.9272 27 1 -0.3633 -1.0246 0.0797 28 1 -0.3634 0.5812 0.8475 29 1 1.8934 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.7834 2.4700 -0.3540 32 1 4.0254 0.7737 0.1281 33 1 5.7328 1.1520 -0.7806 34 1 6.7118 0.8955 -2.2442 35 1 6.8359 3.2516 -1.2386 36 1 5.1368 3.4576 -1.7158 37 1 7.4129 2.7520 -3.5369 38 1 6.7086 4.3610 -3.3417 39 1 5.6272 3.6253 -5.2509 40 1 4.4621 3.1332 -3.9978 41 1 6.6510 1.2210 -4.6713 42 1 5.3577 1.4391 -5.8713 43 1 5.0364 -0.3959 -4.0502 44 1 3.6789 0.6960 -4.3852 45 1 2.6939 1.6559 1.9712 46 1 0.9261 1.6953 1.7668 47 1 -0.0930 3.6151 2.5047 48 1 1.8122 5.2851 2.5908 49 1 2.5064 3.7614 3.3642 50 1 4.1650 3.5479 1.4563 51 1 3.4715 5.0714 0.6821 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602827469.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:13:21 Heat of formation + Delta-G solvation = -27.108010 kcal Electronic energy + Delta-G solvation = -28057.590858 eV Core-core repulsion = 24570.817492 eV Total energy + Delta-G solvation = -3486.773366 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.48440 -39.55467 -38.50557 -36.86912 -34.85243 -33.84018 -33.69689 -31.80170 -29.40334 -27.72553 -26.92406 -26.32351 -25.55071 -23.25668 -22.77776 -22.08862 -21.30984 -21.10391 -19.73392 -18.59921 -18.06090 -17.46251 -16.83951 -16.35712 -16.01178 -15.79239 -15.63604 -15.39547 -15.35799 -14.99449 -14.76499 -14.44889 -14.23618 -14.13370 -14.06821 -13.58943 -13.34796 -13.10324 -12.97019 -12.79862 -12.72874 -12.61096 -12.50653 -12.40133 -12.16545 -11.97722 -11.83198 -11.78900 -11.58334 -11.51209 -11.29777 -11.23225 -10.62128 -10.47154 -10.29446 -10.07718 -9.56883 -8.94831 -8.38152 -6.06473 1.51116 1.59251 1.65788 1.76717 2.01548 2.61927 2.98835 3.35654 3.43821 3.56500 3.85065 3.93091 4.00053 4.05093 4.12322 4.17517 4.19068 4.20812 4.38663 4.41810 4.42950 4.44673 4.55808 4.61523 4.65137 4.66493 4.70747 4.74197 4.81605 4.84958 4.86694 4.96911 4.98887 5.03495 5.11887 5.12377 5.22390 5.26593 5.27816 5.35912 5.39034 5.49878 5.51066 5.58408 5.73802 6.14825 6.30847 6.37027 6.43671 6.52851 6.90408 7.28870 7.67091 9.02404 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.013803 B = 0.004874 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.124582 B = 5743.308936 C = 5979.114687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.060 3.940 3 N -0.523 5.523 4 C 0.045 3.955 5 C 0.508 3.492 6 O -0.565 6.565 7 N -0.602 5.602 8 C 0.106 3.894 9 C -0.140 4.140 10 C -0.113 4.113 11 C -0.120 4.120 12 C -0.119 4.119 13 C 0.110 3.890 14 C 0.113 3.887 15 C 0.006 3.994 16 C -0.536 4.536 17 H 0.023 0.977 18 C -0.017 4.017 19 N -0.938 5.938 20 Si 1.094 2.906 21 H -0.284 1.284 22 H -0.277 1.277 23 H -0.289 1.289 24 C -0.181 4.181 25 C -0.173 4.173 26 H 0.034 0.966 27 H 0.074 0.926 28 H 0.033 0.967 29 H 0.073 0.927 30 H 0.036 0.964 31 H 0.106 0.894 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.036 0.964 37 H 0.083 0.917 38 H 0.056 0.944 39 H 0.069 0.931 40 H 0.028 0.972 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.056 0.944 45 H 0.028 0.972 46 H 0.046 0.954 47 H 0.264 0.736 48 H 0.056 0.944 49 H 0.083 0.917 50 H 0.099 0.901 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.226 -7.883 -8.178 22.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.067 4.067 3 N -0.247 5.247 4 C -0.086 4.086 5 C 0.297 3.703 6 O -0.443 6.443 7 N -0.336 5.336 8 C -0.017 4.017 9 C -0.179 4.179 10 C -0.151 4.151 11 C -0.158 4.158 12 C -0.157 4.157 13 C -0.012 4.012 14 C -0.015 4.015 15 C 0.005 3.995 16 C -0.575 4.575 17 H 0.041 0.959 18 C -0.216 4.216 19 N -0.576 5.576 20 Si 0.920 3.080 21 H -0.209 1.209 22 H -0.202 1.202 23 H -0.215 1.215 24 C -0.220 4.220 25 C -0.210 4.210 26 H 0.054 0.946 27 H 0.093 0.907 28 H 0.053 0.947 29 H 0.092 0.908 30 H 0.054 0.946 31 H 0.124 0.876 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.125 0.875 35 H 0.114 0.886 36 H 0.055 0.945 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.047 0.953 41 H 0.109 0.891 42 H 0.102 0.898 43 H 0.095 0.905 44 H 0.075 0.925 45 H 0.046 0.954 46 H 0.064 0.936 47 H 0.075 0.925 48 H 0.075 0.925 49 H 0.102 0.898 50 H 0.117 0.883 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 16.888 -7.179 -8.922 20.404 hybrid contribution 1.334 -0.637 0.715 1.642 sum 18.222 -7.816 -8.207 21.459 Atomic orbital electron populations 1.21580 0.95735 1.00819 1.00656 1.22050 0.96119 0.88556 1.00016 1.61281 1.18676 1.17879 1.26881 1.22063 0.90940 1.03362 0.92232 1.20965 0.83174 0.76479 0.89724 1.90642 1.35626 1.49113 1.68912 1.47784 1.07177 1.67024 1.11594 1.21730 0.87526 0.95252 0.97197 1.21232 1.01775 0.96231 0.98659 1.20417 0.98933 1.01735 0.93974 1.21081 0.98658 0.97105 0.98972 1.21732 1.00448 0.93980 0.99507 1.21880 1.00889 0.98625 0.79829 1.21526 0.98258 0.94411 0.87291 1.19122 0.94124 0.90116 0.96133 1.21216 0.97429 1.42502 0.96344 0.95877 1.26528 0.99149 0.97091 0.98869 1.70825 1.39749 1.39606 1.07432 0.83206 0.74844 0.76084 0.73868 1.20899 1.20236 1.21506 1.22672 1.04875 1.01581 0.92822 1.22903 0.93328 1.02884 1.01844 0.94632 0.90669 0.94739 0.90817 0.94625 0.87633 0.90769 0.89739 0.87491 0.88584 0.94514 0.89886 0.92558 0.91218 0.95331 0.89116 0.89838 0.90507 0.92541 0.95416 0.93560 0.92519 0.92507 0.89835 0.88285 0.91094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.19 10.07 71.98 0.72 -4.46 16 2 C 0.06 2.26 5.19 86.30 0.45 2.71 16 3 N -0.52 -21.75 3.81 -900.78 -3.43 -25.19 16 4 C 0.04 1.50 3.76 85.56 0.32 1.82 16 5 C 0.51 17.35 7.14 87.65 0.63 17.98 16 6 O -0.56 -24.34 13.82 -3.05 -0.04 -24.38 16 7 N -0.60 -14.81 2.25 -819.24 -1.84 -16.65 16 8 C 0.11 1.79 5.13 87.18 0.45 2.24 16 9 C -0.14 -2.53 5.61 29.20 0.16 -2.36 16 10 C -0.11 -1.82 5.15 28.62 0.15 -1.68 16 11 C -0.12 -2.36 5.51 29.76 0.16 -2.19 16 12 C -0.12 -1.87 5.71 30.23 0.17 -1.70 16 13 C 0.11 2.39 6.11 86.50 0.53 2.92 16 14 C 0.11 4.91 4.65 86.30 0.40 5.31 16 15 C 0.01 0.28 0.84 -52.93 -0.04 0.24 16 16 C -0.54 -30.64 8.54 25.60 0.22 -30.42 16 17 H 0.02 1.40 7.81 -2.91 -0.02 1.38 16 18 C -0.02 -1.01 5.41 84.66 0.46 -0.55 16 19 N -0.94 -56.96 13.48 21.45 0.29 -56.67 16 20 Si 1.09 54.27 29.90 68.60 2.05 56.32 16 21 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 22 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 23 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 24 C -0.18 -8.14 8.65 30.62 0.26 -7.88 16 25 C -0.17 -6.91 8.43 30.62 0.26 -6.65 16 26 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 28 H 0.03 1.51 6.67 -2.39 -0.02 1.49 16 29 H 0.07 2.78 5.85 -2.39 -0.01 2.77 16 30 H 0.04 1.18 8.00 -2.39 -0.02 1.16 16 31 H 0.11 3.63 4.66 -2.39 -0.01 3.62 16 32 H 0.07 2.01 7.29 -2.39 -0.02 2.00 16 33 H 0.08 1.33 6.25 -2.39 -0.01 1.32 16 34 H 0.11 1.19 8.06 -2.39 -0.02 1.17 16 35 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.04 0.94 7.28 -2.39 -0.02 0.92 16 37 H 0.08 0.93 7.36 -2.39 -0.02 0.92 16 38 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.03 0.79 7.48 -2.39 -0.02 0.77 16 41 H 0.09 0.99 7.32 -2.38 -0.02 0.97 16 42 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 43 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.06 1.62 6.96 -2.38 -0.02 1.60 16 45 H 0.03 1.05 7.96 -2.39 -0.02 1.03 16 46 H 0.05 2.26 6.11 -2.39 -0.01 2.24 16 47 H 0.26 15.86 6.18 -92.70 -0.57 15.28 16 48 H 0.06 2.85 8.14 -2.38 -0.02 2.83 16 49 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 50 H 0.10 3.22 7.75 -2.38 -0.02 3.20 16 51 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 Total: -1.00 -72.72 380.88 3.40 -69.32 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: 1.08 Total: 21.94 kcal Atomic # 6 Polarization: -29.99 SS G_CDS: 5.30 Total: -24.69 kcal Atomic # 7 Polarization: -93.52 SS G_CDS: -4.99 Total: -98.51 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.04 Total: -24.38 kcal Atomic # 14 Polarization: 54.27 SS G_CDS: 2.05 Total: 56.32 kcal Total: -72.72 3.40 -69.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602827469.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.214 kcal (2) G-P(sol) polarization free energy of solvation -72.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds