Wall clock time and date at job start Fri Apr 10 2020 22:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46911 * 2 1 4 4 C 1.52996 * 109.47238 * 240.00372 * 2 1 3 5 5 C 1.50702 * 109.47159 * 64.99689 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 C 1.52994 * 109.47216 * 119.99968 * 2 1 3 14 14 N 1.46895 * 109.47270 * 295.00157 * 13 2 1 15 15 C 1.46901 * 111.00119 * 179.97438 * 14 13 2 16 16 H 1.09005 * 110.64008 * 36.68871 * 15 14 13 17 17 C 1.55154 * 110.72035 * 273.54634 * 15 14 13 18 18 C 1.54907 * 101.58223 * 206.13115 * 17 15 14 19 19 N 1.47428 * 104.83072 * 37.01200 * 18 17 15 20 20 C 1.34777 * 125.64706 * 155.83594 * 19 18 17 21 21 O 1.21276 * 120.00020 * 180.02562 * 20 19 18 22 22 C 1.50696 * 120.00189 * 0.02562 * 20 19 18 23 23 C 1.54268 * 110.03466 * 297.91284 * 22 20 19 24 24 C 1.54968 * 104.16008 * 217.13633 * 23 22 20 25 25 C 1.54892 * 102.77605 * 37.88252 * 24 23 22 26 26 C 1.53878 * 110.03583 * 180.69252 * 22 20 19 27 27 C 1.47016 * 108.70282 * 335.86660 * 19 18 17 28 28 H 1.08994 * 109.47016 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46786 * 299.99917 * 1 2 3 30 30 H 1.09001 * 109.46849 * 59.99383 * 1 2 3 31 31 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 32 32 H 1.08994 * 109.47405 * 184.99723 * 4 2 1 33 33 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 34 34 H 1.08998 * 109.46945 * 55.00387 * 13 2 1 35 35 H 1.09002 * 109.47045 * 174.99748 * 13 2 1 36 36 H 1.00903 * 111.00409 * 303.94857 * 14 13 2 37 37 H 1.08999 * 111.00576 * 324.20503 * 17 15 14 38 38 H 1.09000 * 111.00401 * 88.06010 * 17 15 14 39 39 H 1.09000 * 110.36599 * 155.84879 * 18 17 15 40 40 H 1.09003 * 110.37279 * 278.17116 * 18 17 15 41 41 H 1.09006 * 110.01846 * 59.29937 * 22 20 19 42 42 H 1.09002 * 110.48180 * 335.77647 * 23 22 20 43 43 H 1.08994 * 110.48711 * 98.42681 * 23 22 20 44 44 H 1.09003 * 110.72044 * 279.57480 * 24 23 22 45 45 H 1.08994 * 110.92411 * 156.29477 * 24 23 22 46 46 H 1.09005 * 110.48472 * 203.40158 * 25 24 23 47 47 H 1.09000 * 110.48339 * 80.76544 * 25 24 23 48 48 H 1.09000 * 110.03180 * 238.57617 * 26 22 20 49 49 H 1.09007 * 110.02849 * 359.95058 * 26 22 20 50 50 H 1.08999 * 109.88341 * 241.64552 * 27 19 18 51 51 H 1.09007 * 109.88061 * 120.47331 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 1.6413 0.0572 -2.4766 6 1 1.0806 0.9747 -2.3757 7 6 1.9977 -0.3988 -3.7281 8 7 2.6809 -1.5159 -3.8509 9 14 1.5101 0.5700 -5.2489 10 1 0.7525 1.7809 -4.8427 11 1 2.7315 0.9761 -5.9897 12 1 0.6593 -0.2765 -6.1234 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.1248 -0.6272 3.6671 16 1 3.1025 -1.0806 3.5037 17 6 1.1003 -1.6892 4.1465 18 6 1.3978 -1.7448 5.6657 19 7 1.7038 -0.3525 6.0415 20 6 1.5766 0.1741 7.2756 21 8 1.8583 1.3375 7.4705 22 6 1.0843 -0.6827 8.4134 23 6 -0.3485 -1.1750 8.1227 24 6 -1.0475 -1.1450 9.5054 25 6 -0.4646 0.1339 10.1563 26 6 1.0108 0.1488 9.7060 27 6 2.1700 0.3666 4.8470 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.6054 -1.7197 -1.2952 32 1 3.1263 -0.7993 -1.2057 33 1 2.9313 -1.8368 -4.7314 34 1 1.6054 -1.7198 1.2950 35 1 3.1263 -0.7995 1.2055 36 1 1.9882 0.9873 2.3967 37 1 0.0786 -1.3585 3.9603 38 1 1.2889 -2.6542 3.6760 39 1 0.5237 -2.1014 6.2106 40 1 2.2559 -2.3879 5.8611 41 1 1.7502 -1.5342 8.5545 42 1 -0.8496 -0.5014 7.4275 43 1 -0.3300 -2.1899 7.7257 44 1 -0.7869 -2.0283 10.0886 45 1 -2.1286 -1.0632 9.3934 46 1 -0.5314 0.0736 11.2426 47 1 -0.9842 1.0192 9.7898 48 1 1.6403 -0.2994 10.4747 49 1 1.3320 1.1720 9.5106 50 1 3.1915 0.7151 4.9992 51 1 1.5136 1.2129 4.6440 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618887845.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:14:22 Heat of formation + Delta-G solvation = -61.896737 kcal Electronic energy + Delta-G solvation = -25613.967240 eV Core-core repulsion = 22125.685322 eV Total energy + Delta-G solvation = -3488.281918 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 4.71 seconds Orbital eigenvalues (eV) -40.67102 -38.55661 -37.15631 -36.24942 -33.82244 -32.09886 -30.52172 -29.93135 -29.07935 -28.08433 -26.72067 -24.97230 -23.87491 -22.52226 -21.42803 -21.08534 -20.58120 -19.12220 -19.02085 -17.69245 -16.72609 -16.25309 -15.98097 -15.78700 -15.25859 -14.65738 -14.53511 -14.44756 -14.14554 -13.80394 -13.71397 -13.53585 -12.94093 -12.73730 -12.63767 -12.23732 -11.97990 -11.85306 -11.73860 -11.66599 -11.49823 -11.45964 -11.31629 -11.18922 -11.12804 -10.98831 -10.85998 -10.84095 -10.71009 -10.30327 -10.23837 -9.93571 -9.72933 -9.17631 -8.96291 -8.86454 -8.34574 -8.25689 -5.99214 -4.00139 2.42340 2.70213 3.31230 3.38982 3.43169 4.02916 4.16225 4.22227 4.27186 4.43479 4.47971 4.49583 4.75675 4.95712 5.00501 5.00829 5.08333 5.11720 5.19618 5.25159 5.29779 5.34996 5.36860 5.46804 5.57321 5.59399 5.63006 5.66512 5.72052 5.77804 5.79127 5.84283 5.93089 5.97231 6.05155 6.12280 6.15402 6.38272 6.51344 6.65660 6.97816 7.14673 7.17084 7.28105 7.29731 7.54046 7.67850 7.82937 7.95434 8.01007 8.45028 9.06463 9.63406 11.12313 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.037308 B = 0.002063 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.334748 B =13566.439448 C =13619.402460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.083 4.083 3 H 0.054 0.946 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.065 3.935 14 N -0.676 5.676 15 C 0.074 3.926 16 H 0.058 0.942 17 C -0.122 4.122 18 C 0.091 3.909 19 N -0.613 5.613 20 C 0.533 3.467 21 O -0.541 6.541 22 C -0.108 4.108 23 C -0.116 4.116 24 C -0.124 4.124 25 C -0.124 4.124 26 C -0.120 4.120 27 C 0.108 3.892 28 H 0.039 0.961 29 H 0.041 0.959 30 H 0.053 0.947 31 H 0.016 0.984 32 H 0.012 0.988 33 H 0.259 0.741 34 H 0.068 0.932 35 H 0.026 0.974 36 H 0.341 0.659 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.097 0.903 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.066 0.934 47 H 0.066 0.934 48 H 0.067 0.933 49 H 0.089 0.911 50 H 0.066 0.934 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.419 -2.578 27.346 27.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.102 4.102 3 H 0.072 0.928 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.147 4.147 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.063 4.063 14 N -0.308 5.308 15 C -0.037 4.037 16 H 0.076 0.924 17 C -0.160 4.160 18 C -0.032 4.032 19 N -0.348 5.348 20 C 0.322 3.678 21 O -0.418 6.418 22 C -0.130 4.130 23 C -0.154 4.154 24 C -0.162 4.162 25 C -0.162 4.162 26 C -0.157 4.157 27 C -0.015 4.015 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.034 0.966 32 H 0.031 0.969 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.159 0.841 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.086 0.914 41 H 0.115 0.885 42 H 0.090 0.910 43 H 0.094 0.906 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.085 0.915 47 H 0.085 0.915 48 H 0.086 0.914 49 H 0.108 0.892 50 H 0.084 0.916 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.811 -2.302 27.424 27.938 hybrid contribution 0.913 0.472 -1.150 1.542 sum -3.898 -1.831 26.274 26.625 Atomic orbital electron populations 1.21586 0.95674 1.00540 1.00186 1.21208 0.96045 0.98959 0.93967 0.92785 1.19123 0.95896 0.95576 0.90442 1.21277 1.34422 1.08333 0.90978 0.92499 1.25032 0.95343 0.95132 0.99146 1.69977 1.39117 1.21300 1.23280 0.86569 0.78223 0.80159 0.83252 1.19742 1.21133 1.21083 1.22199 0.97221 0.97745 0.89167 1.60614 1.63526 1.05763 1.00894 1.22531 0.96882 0.94473 0.89835 0.92397 1.22845 1.01048 0.99509 0.92638 1.22607 1.01081 0.82890 0.96648 1.48366 1.65904 1.12413 1.08084 1.20297 0.77247 0.87842 0.82443 1.90675 1.50679 1.17593 1.82849 1.21908 0.98494 0.98645 0.93932 1.22455 0.93285 1.01401 0.98253 1.22523 0.99889 0.98226 0.95516 1.22366 0.95541 0.98097 1.00195 1.22173 0.97090 1.01988 0.94488 1.22040 0.99887 0.95682 0.83936 0.94172 0.93957 0.92766 0.96556 0.96940 0.93162 0.91402 0.95584 0.84054 0.89340 0.89927 0.89767 0.91366 0.88531 0.90959 0.90564 0.91232 0.91212 0.91480 0.91475 0.91449 0.89211 0.91609 0.90383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.31 8.89 37.16 0.33 -1.98 16 2 C -0.08 -1.63 2.48 -90.62 -0.22 -1.86 16 3 H 0.05 1.08 8.14 -51.92 -0.42 0.66 16 4 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 5 C -0.51 -14.20 8.41 -34.44 -0.29 -14.49 16 6 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.79 13.29 55.43 0.74 -26.06 16 9 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 C 0.07 1.05 4.93 -3.83 -0.02 1.03 16 14 N -0.68 -8.98 5.76 -104.80 -0.60 -9.58 16 15 C 0.07 0.82 3.24 -65.88 -0.21 0.60 16 16 H 0.06 0.65 7.90 -51.93 -0.41 0.24 16 17 C -0.12 -1.16 6.71 -24.59 -0.16 -1.32 16 18 C 0.09 0.72 6.61 -2.53 -0.02 0.70 16 19 N -0.61 -6.46 3.33 -170.52 -0.57 -7.03 16 20 C 0.53 6.20 7.06 -10.99 -0.08 6.12 16 21 O -0.54 -8.34 15.54 5.56 0.09 -8.25 16 22 C -0.11 -0.88 2.78 -90.65 -0.25 -1.14 16 23 C -0.12 -0.78 5.00 -25.03 -0.13 -0.91 16 24 C -0.12 -0.73 6.91 -24.69 -0.17 -0.90 16 25 C -0.12 -0.85 6.83 -25.08 -0.17 -1.02 16 26 C -0.12 -0.98 6.40 -25.62 -0.16 -1.14 16 27 C 0.11 1.22 6.39 -3.07 -0.02 1.20 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.04 0.71 7.75 -51.93 -0.40 0.31 16 30 H 0.05 1.11 6.95 -51.93 -0.36 0.74 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.07 1.10 8.13 -51.93 -0.42 0.68 16 35 H 0.03 0.43 8.09 -51.93 -0.42 0.01 16 36 H 0.34 4.40 8.45 -39.29 -0.33 4.07 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.08 0.53 4.91 -51.93 -0.26 0.28 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.59 7.85 -51.93 -0.41 0.18 16 43 H 0.08 0.39 6.56 -51.93 -0.34 0.05 16 44 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.09 0.96 6.39 -51.92 -0.33 0.63 16 50 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 51 H 0.08 0.97 7.97 -51.93 -0.41 0.56 16 LS Contribution 391.61 15.07 5.90 5.90 Total: -1.00 -31.58 391.61 -10.79 -42.37 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -9.52 Total: -0.86 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -1.80 Total: -13.11 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: -0.43 Total: -42.67 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: 0.09 Total: -8.25 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.58 -10.79 -42.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618887845.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.527 kcal (2) G-P(sol) polarization free energy of solvation -31.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.71 seconds