Wall clock time and date at job start Fri Apr 10 2020 22:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46911 * 2 1 4 4 C 1.52996 * 109.47238 * 240.00372 * 2 1 3 5 5 C 1.50702 * 109.47159 * 64.99689 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 C 1.52994 * 109.47216 * 119.99968 * 2 1 3 14 14 N 1.46895 * 109.47270 * 295.00157 * 13 2 1 15 15 C 1.46901 * 111.00119 * 179.97438 * 14 13 2 16 16 H 1.09005 * 110.64008 * 36.68871 * 15 14 13 17 17 C 1.55154 * 110.72035 * 273.54634 * 15 14 13 18 18 C 1.54907 * 101.58223 * 206.13115 * 17 15 14 19 19 N 1.47428 * 104.83072 * 37.01200 * 18 17 15 20 20 C 1.34777 * 125.64706 * 155.83594 * 19 18 17 21 21 O 1.21276 * 120.00020 * 180.02562 * 20 19 18 22 22 C 1.50696 * 120.00189 * 0.02562 * 20 19 18 23 23 C 1.54268 * 110.03466 * 297.91284 * 22 20 19 24 24 C 1.54968 * 104.16008 * 217.13633 * 23 22 20 25 25 C 1.54892 * 102.77605 * 37.88252 * 24 23 22 26 26 C 1.53878 * 110.03583 * 180.69252 * 22 20 19 27 27 C 1.47016 * 108.70282 * 335.86660 * 19 18 17 28 28 H 1.08994 * 109.47016 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46786 * 299.99917 * 1 2 3 30 30 H 1.09001 * 109.46849 * 59.99383 * 1 2 3 31 31 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 32 32 H 1.08994 * 109.47405 * 184.99723 * 4 2 1 33 33 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 34 34 H 1.08998 * 109.46945 * 55.00387 * 13 2 1 35 35 H 1.09002 * 109.47045 * 174.99748 * 13 2 1 36 36 H 1.00903 * 111.00409 * 303.94857 * 14 13 2 37 37 H 1.08999 * 111.00576 * 324.20503 * 17 15 14 38 38 H 1.09000 * 111.00401 * 88.06010 * 17 15 14 39 39 H 1.09000 * 110.36599 * 155.84879 * 18 17 15 40 40 H 1.09003 * 110.37279 * 278.17116 * 18 17 15 41 41 H 1.09006 * 110.01846 * 59.29937 * 22 20 19 42 42 H 1.09002 * 110.48180 * 335.77647 * 23 22 20 43 43 H 1.08994 * 110.48711 * 98.42681 * 23 22 20 44 44 H 1.09003 * 110.72044 * 279.57480 * 24 23 22 45 45 H 1.08994 * 110.92411 * 156.29477 * 24 23 22 46 46 H 1.09005 * 110.48472 * 203.40158 * 25 24 23 47 47 H 1.09000 * 110.48339 * 80.76544 * 25 24 23 48 48 H 1.09000 * 110.03180 * 238.57617 * 26 22 20 49 49 H 1.09007 * 110.02849 * 359.95058 * 26 22 20 50 50 H 1.08999 * 109.88341 * 241.64552 * 27 19 18 51 51 H 1.09007 * 109.88061 * 120.47331 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 1.6413 0.0572 -2.4766 6 1 1.0806 0.9747 -2.3757 7 6 1.9977 -0.3988 -3.7281 8 7 2.6809 -1.5159 -3.8509 9 14 1.5101 0.5700 -5.2489 10 1 0.7525 1.7809 -4.8427 11 1 2.7315 0.9761 -5.9897 12 1 0.6593 -0.2765 -6.1234 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.1248 -0.6272 3.6671 16 1 3.1025 -1.0806 3.5037 17 6 1.1003 -1.6892 4.1465 18 6 1.3978 -1.7448 5.6657 19 7 1.7038 -0.3525 6.0415 20 6 1.5766 0.1741 7.2756 21 8 1.8583 1.3375 7.4705 22 6 1.0843 -0.6827 8.4134 23 6 -0.3485 -1.1750 8.1227 24 6 -1.0475 -1.1450 9.5054 25 6 -0.4646 0.1339 10.1563 26 6 1.0108 0.1488 9.7060 27 6 2.1700 0.3666 4.8470 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.6054 -1.7197 -1.2952 32 1 3.1263 -0.7993 -1.2057 33 1 2.9313 -1.8368 -4.7314 34 1 1.6054 -1.7198 1.2950 35 1 3.1263 -0.7995 1.2055 36 1 1.9882 0.9873 2.3967 37 1 0.0786 -1.3585 3.9603 38 1 1.2889 -2.6542 3.6760 39 1 0.5237 -2.1014 6.2106 40 1 2.2559 -2.3879 5.8611 41 1 1.7502 -1.5342 8.5545 42 1 -0.8496 -0.5014 7.4275 43 1 -0.3300 -2.1899 7.7257 44 1 -0.7869 -2.0283 10.0886 45 1 -2.1286 -1.0632 9.3934 46 1 -0.5314 0.0736 11.2426 47 1 -0.9842 1.0192 9.7898 48 1 1.6403 -0.2994 10.4747 49 1 1.3320 1.1720 9.5106 50 1 3.1915 0.7151 4.9992 51 1 1.5136 1.2129 4.6440 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618887845.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:14:19 Heat of formation + Delta-G solvation = -80.514654 kcal Electronic energy + Delta-G solvation = -25614.774574 eV Core-core repulsion = 22125.685322 eV Total energy + Delta-G solvation = -3489.089252 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 2.36 seconds Orbital eigenvalues (eV) -41.49522 -39.44413 -37.99134 -37.57640 -35.36092 -33.87784 -31.52768 -30.64132 -29.65599 -29.20248 -28.42198 -26.45724 -24.77883 -24.20971 -22.14476 -21.63811 -21.51682 -20.63855 -19.84015 -18.51094 -18.44710 -17.50049 -16.74711 -16.56111 -16.51201 -16.27985 -15.74082 -15.50638 -15.04599 -14.95221 -14.63341 -14.36260 -14.27381 -13.94275 -13.74821 -13.60495 -13.28908 -13.10370 -12.82011 -12.68527 -12.65020 -12.63773 -12.27170 -12.21795 -12.16520 -12.04215 -11.94922 -11.92136 -11.71560 -11.58461 -11.43236 -11.41768 -11.07329 -10.92802 -10.79650 -10.53343 -9.73209 -9.38526 -8.17525 -6.25858 1.39438 1.40407 1.53003 1.55855 1.88430 2.42005 3.16051 3.18861 3.29897 3.55499 3.64935 3.69822 3.79510 4.11763 4.16807 4.18342 4.30086 4.33658 4.41511 4.45354 4.49144 4.55339 4.56334 4.62535 4.67671 4.72894 4.75228 4.84314 4.93491 4.94548 4.99476 5.00342 5.05337 5.09243 5.17258 5.23286 5.25425 5.28280 5.32034 5.44589 5.47020 5.48162 5.53243 5.57740 5.82784 5.90461 6.06599 6.32447 6.39066 6.48721 6.90472 7.08585 7.42226 8.94508 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.037308 B = 0.002063 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.334748 B =13566.439448 C =13619.402460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.075 4.075 3 H 0.050 0.950 4 C 0.033 3.967 5 C -0.527 4.527 6 H 0.059 0.941 7 C -0.003 4.003 8 N -0.934 5.934 9 Si 0.959 3.041 10 H -0.263 1.263 11 H -0.281 1.281 12 H -0.279 1.279 13 C 0.081 3.919 14 N -0.674 5.674 15 C 0.076 3.924 16 H 0.062 0.938 17 C -0.119 4.119 18 C 0.094 3.906 19 N -0.614 5.614 20 C 0.525 3.475 21 O -0.589 6.589 22 C -0.103 4.103 23 C -0.114 4.114 24 C -0.118 4.118 25 C -0.125 4.125 26 C -0.122 4.122 27 C 0.110 3.890 28 H 0.038 0.962 29 H 0.065 0.935 30 H 0.034 0.966 31 H -0.007 1.007 32 H -0.014 1.014 33 H 0.261 0.739 34 H 0.069 0.931 35 H 0.020 0.980 36 H 0.343 0.657 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.088 0.912 41 H 0.121 0.879 42 H 0.054 0.946 43 H 0.100 0.900 44 H 0.087 0.913 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.051 0.949 48 H 0.082 0.918 49 H 0.057 0.943 50 H 0.060 0.940 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.437 -3.668 28.572 29.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.094 4.094 3 H 0.069 0.931 4 C -0.005 4.005 5 C -0.565 4.565 6 H 0.077 0.923 7 C -0.200 4.200 8 N -0.575 5.575 9 Si 0.785 3.215 10 H -0.187 1.187 11 H -0.206 1.206 12 H -0.205 1.205 13 C -0.048 4.048 14 N -0.306 5.306 15 C -0.034 4.034 16 H 0.080 0.920 17 C -0.157 4.157 18 C -0.028 4.028 19 N -0.347 5.347 20 C 0.316 3.684 21 O -0.470 6.470 22 C -0.124 4.124 23 C -0.151 4.151 24 C -0.156 4.156 25 C -0.163 4.163 26 C -0.160 4.160 27 C -0.013 4.013 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.053 0.947 31 H 0.011 0.989 32 H 0.005 0.995 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.038 0.962 36 H 0.162 0.838 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.124 0.876 40 H 0.106 0.894 41 H 0.139 0.861 42 H 0.072 0.928 43 H 0.118 0.882 44 H 0.106 0.894 45 H 0.093 0.907 46 H 0.099 0.901 47 H 0.070 0.930 48 H 0.101 0.899 49 H 0.076 0.924 50 H 0.078 0.922 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.843 -3.411 28.657 29.445 hybrid contribution 1.258 0.828 -1.509 2.132 sum -4.585 -2.583 27.148 27.653 Atomic orbital electron populations 1.21476 0.94678 1.00493 1.00318 1.21022 0.96726 0.98359 0.93329 0.93106 1.19011 0.94119 0.94776 0.92599 1.21679 1.34140 1.08553 0.92173 0.92271 1.25935 0.95351 0.96159 1.02595 1.70100 1.40298 1.22922 1.24180 0.85480 0.78022 0.78911 0.79134 1.18735 1.20649 1.20500 1.21867 0.96641 0.97518 0.88759 1.60561 1.63599 1.05778 1.00664 1.22546 0.97692 0.94684 0.88500 0.92023 1.22836 0.99840 0.99231 0.93801 1.22784 1.02901 0.81518 0.95601 1.48482 1.65178 1.13476 1.07544 1.21014 0.76447 0.87648 0.83323 1.90653 1.52851 1.19839 1.83686 1.21994 0.99780 0.98541 0.92134 1.22471 0.91959 1.02111 0.98598 1.22525 1.00066 0.98094 0.94897 1.22376 0.94506 0.98292 1.01131 1.22181 0.98272 1.00361 0.95196 1.21905 0.99248 0.95504 0.84679 0.94280 0.91625 0.94682 0.98876 0.99528 0.92973 0.91204 0.96156 0.83828 0.90249 0.88804 0.87553 0.89386 0.86149 0.92752 0.88181 0.89440 0.90654 0.90131 0.93041 0.89897 0.92386 0.92187 0.91931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.16 8.89 71.98 0.64 -3.52 16 2 C -0.08 -2.97 2.48 -10.80 -0.03 -3.00 16 3 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 4 C 0.03 1.68 4.45 29.85 0.13 1.81 16 5 C -0.53 -29.63 8.41 25.60 0.22 -29.41 16 6 H 0.06 3.23 7.06 -2.91 -0.02 3.21 16 7 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 8 N -0.93 -56.68 13.29 21.45 0.28 -56.40 16 9 Si 0.96 44.50 29.54 68.60 2.03 46.52 16 10 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 13 C 0.08 2.56 4.93 86.30 0.43 2.99 16 14 N -0.67 -17.22 5.76 -485.46 -2.79 -20.02 16 15 C 0.08 1.59 3.24 46.10 0.15 1.74 16 16 H 0.06 1.29 7.90 -2.38 -0.02 1.27 16 17 C -0.12 -1.97 6.71 31.98 0.21 -1.76 16 18 C 0.09 1.21 6.61 86.85 0.57 1.78 16 19 N -0.61 -12.17 3.33 -811.80 -2.70 -14.87 16 20 C 0.53 11.95 7.06 87.66 0.62 12.57 16 21 O -0.59 -18.85 15.54 -3.02 -0.05 -18.89 16 22 C -0.10 -1.49 2.78 -10.82 -0.03 -1.52 16 23 C -0.11 -1.23 5.00 31.70 0.16 -1.07 16 24 C -0.12 -1.06 6.91 31.91 0.22 -0.84 16 25 C -0.13 -1.56 6.83 31.67 0.22 -1.34 16 26 C -0.12 -1.90 6.40 31.32 0.20 -1.70 16 27 C 0.11 2.45 6.39 86.73 0.55 3.01 16 28 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.06 2.11 7.75 -2.39 -0.02 2.09 16 30 H 0.03 1.40 6.95 -2.39 -0.02 1.39 16 31 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 32 H -0.01 -0.77 8.14 -2.39 -0.02 -0.78 16 33 H 0.26 14.92 8.31 -92.70 -0.77 14.15 16 34 H 0.07 2.20 8.13 -2.39 -0.02 2.18 16 35 H 0.02 0.66 8.09 -2.39 -0.02 0.64 16 36 H 0.34 8.63 8.45 -89.69 -0.76 7.87 16 37 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.11 0.93 4.91 -2.39 -0.01 0.92 16 40 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.12 1.18 8.14 -2.38 -0.02 1.16 16 42 H 0.05 0.80 7.85 -2.39 -0.02 0.78 16 43 H 0.10 0.61 6.56 -2.39 -0.02 0.59 16 44 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 47 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.06 1.30 6.39 -2.38 -0.02 1.28 16 50 H 0.06 1.39 8.14 -2.39 -0.02 1.38 16 51 H 0.06 1.59 7.97 -2.38 -0.02 1.57 16 Total: -1.00 -70.24 391.61 1.62 -68.61 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.13 Total: 15.02 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: 4.73 Total: -19.99 kcal Atomic # 7 Polarization: -86.07 SS G_CDS: -5.21 Total: -91.28 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.05 Total: -18.89 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -70.24 1.62 -68.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618887845.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.900 kcal (2) G-P(sol) polarization free energy of solvation -70.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.36 seconds