Wall clock time and date at job start Fri Apr 10 2020 22:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47117 * 2 1 4 4 C 1.53003 * 109.47403 * 172.65683 * 3 2 1 5 5 C 1.52996 * 109.47467 * 185.00056 * 4 3 2 6 6 C 1.53003 * 109.47022 * 292.65124 * 3 2 1 7 7 N 1.46903 * 109.46730 * 67.00572 * 6 3 2 8 8 C 1.46906 * 111.00059 * 86.88912 * 7 6 3 9 9 C 1.50699 * 109.46542 * 285.27973 * 8 7 6 10 10 H 1.07996 * 120.00814 * 358.59356 * 9 8 7 11 11 C 1.37880 * 119.99608 * 178.58569 * 9 8 7 12 12 N 1.31519 * 119.99887 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00135 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46990 * 0.02562 * 13 11 9 15 15 H 1.48495 * 109.46942 * 120.00252 * 13 11 9 16 16 H 1.48499 * 109.47565 * 240.00699 * 13 11 9 17 17 C 1.46902 * 111.00004 * 210.83834 * 7 6 3 18 18 C 1.50701 * 109.46864 * 66.04611 * 17 7 6 19 19 N 1.31381 * 127.05110 * 270.02369 * 18 17 7 20 20 N 1.28595 * 108.71726 * 179.97438 * 19 18 17 21 21 C 1.46500 * 124.61959 * 180.02562 * 20 19 18 22 22 C 1.52996 * 109.47574 * 269.98859 * 21 20 19 23 23 N 1.28603 * 110.76677 * 0.02562 * 20 19 18 24 24 C 1.31379 * 108.71282 * 359.97438 * 23 20 19 25 25 C 1.50707 * 127.04591 * 180.02562 * 24 23 20 26 26 H 1.08996 * 109.47293 * 298.68186 * 1 2 3 27 27 H 1.09004 * 109.47178 * 58.67772 * 1 2 3 28 28 H 1.08991 * 109.47266 * 178.67934 * 1 2 3 29 29 H 1.09004 * 109.47017 * 239.99967 * 2 1 3 30 30 H 1.08998 * 109.47072 * 120.00133 * 2 1 3 31 31 H 1.08996 * 109.47719 * 52.65197 * 3 2 1 32 32 H 1.08998 * 109.46815 * 305.00183 * 4 3 2 33 33 H 1.09002 * 109.46963 * 64.99090 * 4 3 2 34 34 H 1.09000 * 109.47035 * 180.02562 * 5 4 3 35 35 H 1.09004 * 109.46542 * 299.99808 * 5 4 3 36 36 H 1.08994 * 109.47024 * 59.99453 * 5 4 3 37 37 H 1.08995 * 109.47416 * 307.00999 * 6 3 2 38 38 H 1.09005 * 109.47393 * 187.00367 * 6 3 2 39 39 H 1.08999 * 109.47006 * 45.27694 * 8 7 6 40 40 H 1.08998 * 109.46984 * 165.28244 * 8 7 6 41 41 H 0.96997 * 119.99449 * 179.97438 * 12 11 9 42 42 H 1.09003 * 109.47468 * 306.04971 * 17 7 6 43 43 H 1.08997 * 109.47283 * 186.04664 * 17 7 6 44 44 H 1.09003 * 109.46989 * 29.99091 * 21 20 19 45 45 H 1.09000 * 109.47060 * 149.98484 * 21 20 19 46 46 H 1.09003 * 109.47153 * 300.00132 * 22 21 20 47 47 H 1.09000 * 109.47233 * 59.99731 * 22 21 20 48 48 H 1.09003 * 109.47544 * 179.97438 * 22 21 20 49 49 H 1.08996 * 109.46791 * 89.97575 * 25 24 23 50 50 H 1.09006 * 109.46830 * 209.97431 * 25 24 23 51 51 H 1.08994 * 109.47004 * 329.97515 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5589 1.4465 0.1844 5 6 4.0537 2.8888 0.3093 6 6 1.6862 2.1085 -1.3313 7 7 0.2281 2.2560 -1.4327 8 6 -0.2190 3.5084 -0.8083 9 6 -0.1666 3.3686 0.6913 10 1 0.1439 2.4348 1.1361 11 6 -0.5149 4.4331 1.4954 12 7 -0.8933 5.5702 0.9537 13 14 -0.4506 4.2598 3.3542 14 1 0.0033 2.8909 3.7083 15 1 0.4997 5.2555 3.9116 16 1 -1.8030 4.4952 3.9205 17 6 -0.2128 2.1787 -2.8318 18 6 0.0452 0.7925 -3.3638 19 7 1.1345 0.3635 -3.9600 20 7 0.9757 -0.8748 -4.2683 21 6 1.9790 -1.6988 -4.9471 22 6 1.7825 -1.5979 -6.4610 23 7 -0.1838 -1.2915 -3.8997 24 6 -0.8247 -0.2995 -3.3240 25 6 -2.2137 -0.3333 -2.7402 26 1 -0.3633 0.4932 0.9015 27 1 -0.3634 0.5342 -0.8779 28 1 -0.3633 -1.0273 -0.0237 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.5734 1.9929 0.8169 32 1 3.8166 0.8944 1.0882 33 1 4.0307 0.9737 -0.6770 34 1 5.1358 2.8916 0.4402 35 1 3.7959 3.4409 -0.5946 36 1 3.5818 3.3615 1.1707 37 1 2.0469 1.4909 -2.1537 38 1 2.1552 3.0912 -1.3820 39 1 0.4341 4.3233 -1.1203 40 1 -1.2418 3.7236 -1.1176 41 1 -1.1387 6.3189 1.5194 42 1 0.3397 2.9052 -3.4277 43 1 -1.2791 2.3974 -2.8894 44 1 2.9765 -1.3455 -4.6858 45 1 1.8680 -2.7372 -4.6347 46 1 0.7850 -1.9513 -6.7223 47 1 1.8934 -0.5595 -6.7734 48 1 2.5293 -2.2106 -6.9660 49 1 -2.1593 -0.6184 -1.6896 50 1 -2.6678 0.6540 -2.8258 51 1 -2.8184 -1.0596 -3.2831 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823439184.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:16:04 Heat of formation + Delta-G solvation = 85.721237 kcal Electronic energy + Delta-G solvation = -28005.648339 eV Core-core repulsion = 24556.060368 eV Total energy + Delta-G solvation = -3449.587972 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.227 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.44296 -39.66245 -36.58498 -35.76402 -34.58417 -33.65371 -32.73655 -32.37238 -29.62908 -28.90571 -28.54509 -26.75373 -25.45435 -24.04122 -22.76608 -22.64622 -21.89150 -21.47064 -20.72189 -18.40891 -18.00533 -17.55965 -16.83138 -16.51813 -15.96128 -15.58077 -15.42393 -15.01269 -14.78040 -14.64891 -14.53843 -14.16497 -14.13037 -13.87391 -13.74812 -13.32622 -13.25795 -13.23987 -13.02292 -12.94580 -12.89081 -12.62145 -12.50163 -12.29323 -12.24490 -12.16485 -12.07120 -11.95565 -11.65078 -11.56363 -11.34146 -11.21113 -11.05066 -10.95805 -10.59202 -10.37847 -9.81131 -8.69410 -8.06705 -6.10981 0.90556 1.42776 1.44778 1.47380 1.53318 1.56735 2.47906 3.13569 3.26624 3.47204 3.81112 3.98082 3.99372 4.03090 4.11858 4.19928 4.26447 4.32697 4.43134 4.49042 4.62391 4.66883 4.72998 4.73726 4.76232 4.78236 4.87781 4.90626 4.93363 5.00380 5.04186 5.07569 5.13384 5.15958 5.22153 5.30600 5.32082 5.33055 5.37470 5.40875 5.49667 5.50744 5.59833 5.68547 5.93517 5.99755 6.18938 6.26300 6.45469 6.68860 7.05714 7.47820 7.56045 9.03955 Molecular weight = 308.23amu Principal moments of inertia in cm(-1) A = 0.016428 B = 0.004713 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.947563 B = 5940.006052 C = 6588.700944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.086 4.086 3 C -0.097 4.097 4 C -0.110 4.110 5 C -0.147 4.147 6 C 0.079 3.921 7 N -0.512 5.512 8 C 0.208 3.792 9 C -0.496 4.496 10 H 0.084 0.916 11 C 0.005 3.995 12 N -0.936 5.936 13 Si 0.946 3.054 14 H -0.263 1.263 15 H -0.286 1.286 16 H -0.283 1.283 17 C 0.136 3.864 18 C 0.012 3.988 19 N -0.299 5.299 20 N -0.156 5.156 21 C 0.126 3.874 22 C -0.160 4.160 23 N -0.305 5.305 24 C 0.013 3.987 25 C -0.064 4.064 26 H 0.030 0.970 27 H 0.114 0.886 28 H 0.025 0.975 29 H 0.034 0.966 30 H 0.046 0.954 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.042 0.958 36 H 0.039 0.961 37 H 0.065 0.935 38 H 0.016 0.984 39 H -0.036 1.036 40 H 0.011 0.989 41 H 0.258 0.742 42 H 0.033 0.967 43 H 0.097 0.903 44 H 0.116 0.884 45 H 0.122 0.878 46 H 0.056 0.944 47 H 0.051 0.949 48 H 0.114 0.886 49 H 0.077 0.923 50 H 0.084 0.916 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.783 -14.737 -10.663 19.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.123 4.123 3 C -0.116 4.116 4 C -0.148 4.148 5 C -0.204 4.204 6 C -0.050 4.050 7 N -0.236 5.236 8 C 0.083 3.917 9 C -0.535 4.535 10 H 0.102 0.898 11 C -0.192 4.192 12 N -0.578 5.578 13 Si 0.772 3.228 14 H -0.187 1.187 15 H -0.213 1.213 16 H -0.210 1.210 17 C 0.006 3.994 18 C -0.150 4.150 19 N -0.143 5.143 20 N -0.058 5.058 21 C 0.008 3.992 22 C -0.218 4.218 23 N -0.148 5.148 24 C -0.149 4.149 25 C -0.122 4.122 26 H 0.049 0.951 27 H 0.132 0.868 28 H 0.044 0.956 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.083 0.917 38 H 0.034 0.966 39 H -0.018 1.018 40 H 0.029 0.971 41 H 0.067 0.933 42 H 0.052 0.948 43 H 0.115 0.885 44 H 0.135 0.865 45 H 0.140 0.860 46 H 0.075 0.925 47 H 0.070 0.930 48 H 0.132 0.868 49 H 0.096 0.904 50 H 0.103 0.897 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.482 -15.757 -11.037 20.301 hybrid contribution -0.301 1.771 0.978 2.045 sum 6.181 -13.986 -10.059 18.303 Atomic orbital electron populations 1.22265 0.95520 0.98917 1.05186 1.21196 0.96918 0.95304 0.98930 1.21505 0.94997 0.96360 0.98700 1.21485 0.94998 0.96848 1.01435 1.21748 1.00769 0.96816 1.01084 1.22042 0.87476 0.97849 0.97593 1.62235 1.12324 1.36701 1.12298 1.19509 0.93685 0.84151 0.94397 1.21741 1.42013 0.98381 0.91325 0.89811 1.25686 0.95827 0.95208 1.02448 1.70087 1.47767 1.03564 1.36376 0.85678 0.77428 0.78287 0.81390 1.18737 1.21274 1.20958 1.20303 1.01429 0.88303 0.89317 1.22766 0.91075 0.98555 1.02607 1.73898 1.25373 0.97866 1.17140 1.48339 1.11185 1.05649 1.40631 1.22327 0.88839 0.94879 0.93136 1.22119 1.03889 1.03220 0.92556 1.73896 0.96433 1.27533 1.16983 1.23230 1.00256 0.89192 1.02206 1.20164 0.87395 1.04074 1.00586 0.95068 0.86834 0.95606 0.94758 0.93501 0.90129 0.91588 0.92149 0.91407 0.93851 0.94162 0.91691 0.96591 1.01824 0.97126 0.93278 0.94842 0.88492 0.86549 0.85967 0.92499 0.92977 0.86771 0.90391 0.89712 0.89666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.96 8.74 71.98 0.63 -5.33 16 2 C -0.09 -2.99 5.38 30.59 0.16 -2.83 16 3 C -0.10 -3.61 1.88 -10.79 -0.02 -3.63 16 4 C -0.11 -3.43 5.40 30.59 0.17 -3.27 16 5 C -0.15 -4.68 9.68 71.98 0.70 -3.99 16 6 C 0.08 3.06 4.11 86.30 0.35 3.41 16 7 N -0.51 -20.75 1.30 -905.33 -1.18 -21.93 16 8 C 0.21 10.38 4.73 85.56 0.40 10.79 16 9 C -0.50 -26.20 8.03 25.60 0.21 -25.99 16 10 H 0.08 4.33 3.70 -2.91 -0.01 4.32 16 11 C 0.01 0.30 5.46 84.65 0.46 0.76 16 12 N -0.94 -54.92 13.29 21.45 0.28 -54.64 16 13 Si 0.95 43.78 29.54 68.60 2.03 45.80 16 14 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 15 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 16 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 17 C 0.14 4.89 5.25 85.56 0.45 5.34 16 18 C 0.01 0.40 5.30 42.97 0.23 0.63 16 19 N -0.30 -9.53 10.85 -47.25 -0.51 -10.04 16 20 N -0.16 -4.26 3.95 -187.51 -0.74 -5.00 16 21 C 0.13 2.12 7.26 86.38 0.63 2.74 16 22 C -0.16 -2.14 10.24 71.98 0.74 -1.41 16 23 N -0.31 -9.02 12.05 -47.24 -0.57 -9.59 16 24 C 0.01 0.41 6.66 42.98 0.29 0.70 16 25 C -0.06 -1.61 9.99 71.24 0.71 -0.90 16 26 H 0.03 1.25 6.90 -2.39 -0.02 1.24 16 27 H 0.11 4.28 2.63 -2.39 -0.01 4.27 16 28 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.03 1.18 8.11 -2.38 -0.02 1.16 16 30 H 0.05 1.52 8.13 -2.39 -0.02 1.50 16 31 H 0.08 3.56 4.50 -2.39 -0.01 3.55 16 32 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.06 1.73 8.14 -2.39 -0.02 1.72 16 34 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.04 1.47 6.42 -2.38 -0.02 1.45 16 36 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.06 2.43 5.86 -2.39 -0.01 2.42 16 38 H 0.02 0.68 5.66 -2.38 -0.01 0.67 16 39 H -0.04 -2.00 7.66 -2.39 -0.02 -2.02 16 40 H 0.01 0.56 7.75 -2.39 -0.02 0.54 16 41 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 42 H 0.03 1.23 8.12 -2.39 -0.02 1.21 16 43 H 0.10 3.28 7.20 -2.39 -0.02 3.27 16 44 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.08 2.06 7.51 -2.39 -0.02 2.04 16 50 H 0.08 2.05 7.50 -2.38 -0.02 2.03 16 51 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -64.06 385.91 6.31 -57.75 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 0.90 Total: 20.62 kcal Atomic # 6 Polarization: -29.08 SS G_CDS: 6.10 Total: -22.98 kcal Atomic # 7 Polarization: -98.48 SS G_CDS: -2.72 Total: -101.20 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -64.06 6.31 -57.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823439184.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.476 kcal (2) G-P(sol) polarization free energy of solvation -64.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds