Wall clock time and date at job start Fri Apr 10 2020 22:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46903 * 109.47016 * 2 1 4 4 C 1.46903 * 110.99985 * 195.78804 * 3 2 1 5 5 C 1.50700 * 109.47256 * 66.04751 * 4 3 2 6 6 H 1.08004 * 119.99918 * 359.97438 * 5 4 3 7 7 C 1.37880 * 120.00098 * 180.02562 * 5 4 3 8 8 N 1.31508 * 119.99867 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99692 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46642 * 180.02562 * 9 7 5 11 11 H 1.48502 * 109.46982 * 299.99652 * 9 7 5 12 12 H 1.48497 * 109.46949 * 60.00054 * 9 7 5 13 13 C 1.46894 * 110.99925 * 71.83799 * 3 2 1 14 14 N 1.46505 * 109.47131 * 208.65139 * 13 3 2 15 15 C 1.46761 * 124.34589 * 79.77496 * 14 13 3 16 16 C 1.54483 * 105.47220 * 197.01681 * 15 14 13 17 17 C 1.54625 * 101.76454 * 334.58324 * 16 15 14 18 18 H 1.09008 * 110.48719 * 143.47194 * 17 16 15 19 19 C 1.52997 * 110.48901 * 265.98858 * 17 16 15 20 20 C 1.53003 * 109.47003 * 299.99739 * 19 17 16 21 21 C 1.52998 * 109.47376 * 180.02562 * 20 19 17 22 22 C 1.53001 * 109.46914 * 59.99966 * 21 20 19 23 23 C 1.53002 * 109.47497 * 300.00242 * 22 21 20 24 24 C 1.52997 * 109.47136 * 180.02562 * 19 17 16 25 25 C 1.34412 * 124.35149 * 259.47880 * 14 13 3 26 26 O 1.21287 * 124.94348 * 359.56576 * 25 14 13 27 27 H 1.09003 * 109.47059 * 61.25919 * 1 2 3 28 28 H 1.08996 * 109.47116 * 181.25299 * 1 2 3 29 29 H 1.08995 * 109.47217 * 301.25387 * 1 2 3 30 30 H 1.09007 * 109.47795 * 240.00208 * 2 1 3 31 31 H 1.09000 * 109.47673 * 120.00257 * 2 1 3 32 32 H 1.08999 * 109.47282 * 306.04631 * 4 3 2 33 33 H 1.08997 * 109.47072 * 186.04781 * 4 3 2 34 34 H 0.96996 * 120.00571 * 0.02562 * 8 7 5 35 35 H 1.09000 * 109.47467 * 328.64956 * 13 3 2 36 36 H 1.09004 * 109.47587 * 88.65061 * 13 3 2 37 37 H 1.08998 * 110.25115 * 316.01721 * 15 14 13 38 38 H 1.09005 * 110.25098 * 77.93324 * 15 14 13 39 39 H 1.09000 * 110.96746 * 92.70333 * 16 15 14 40 40 H 1.08999 * 110.97189 * 216.46481 * 16 15 14 41 41 H 1.08999 * 109.47286 * 59.99861 * 19 17 16 42 42 H 1.08999 * 109.47199 * 300.00175 * 20 19 17 43 43 H 1.09000 * 109.47206 * 59.99826 * 20 19 17 44 44 H 1.08999 * 109.47072 * 300.00219 * 21 20 19 45 45 H 1.08997 * 109.47343 * 180.02562 * 21 20 19 46 46 H 1.09006 * 109.47074 * 180.02562 * 22 21 20 47 47 H 1.08999 * 109.47045 * 60.00236 * 22 21 20 48 48 H 1.09005 * 109.46878 * 300.00480 * 23 22 21 49 49 H 1.08996 * 109.47119 * 180.02562 * 23 22 21 50 50 H 1.08997 * 109.47152 * 299.99840 * 24 19 17 51 51 H 1.08999 * 109.47307 * 59.99677 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4393 1.4415 -0.3731 5 6 3.5998 1.0045 -1.8065 6 1 2.7338 0.7135 -2.3825 7 6 4.8523 0.9752 -2.3822 8 7 5.9068 1.3291 -1.6806 9 14 5.0510 0.4343 -4.1591 10 1 6.4863 0.4900 -4.5358 11 1 4.5534 -0.9566 -4.3117 12 1 4.2714 1.3387 -5.0419 13 6 1.7920 2.0238 1.3031 14 7 1.6279 3.4677 1.1171 15 6 0.3864 4.1089 0.6684 16 6 0.7973 5.5248 0.2068 17 6 2.0811 5.7659 1.0342 18 1 2.8123 6.3246 0.4498 19 6 1.7514 6.5102 2.3296 20 6 1.1152 7.8607 1.9941 21 6 0.7861 8.6053 3.2895 22 6 2.0712 8.8314 4.0884 23 6 2.7075 7.4810 4.4240 24 6 3.0362 6.7369 3.1288 25 6 2.5933 4.3758 1.3409 26 8 3.7129 4.1181 1.7297 27 1 -0.3633 0.4942 -0.9011 28 1 -0.3633 -1.0274 0.0225 29 1 -0.3633 0.5332 0.8785 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 4.0120 0.7783 0.2751 33 1 3.8039 2.4626 -0.2616 34 1 5.8037 1.6103 -0.7581 35 1 0.8912 1.6114 1.7576 36 1 2.6460 1.8361 1.9539 37 1 -0.0469 3.5522 -0.1625 38 1 -0.3251 4.1710 1.4919 39 1 1.0132 5.5394 -0.8615 40 1 0.0284 6.2554 0.4579 41 1 1.0544 5.9174 2.9220 42 1 1.8122 8.4535 1.4018 43 1 0.2000 7.6997 1.4246 44 1 0.0893 8.0127 3.8823 45 1 0.3325 9.5672 3.0505 46 1 1.8367 9.3615 5.0116 47 1 2.7680 9.4240 3.4957 48 1 2.0106 6.8883 5.0167 49 1 3.6227 7.6421 4.9935 50 1 3.4899 5.7750 3.3678 51 1 3.7329 7.3299 2.5362 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853492126.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:16:11 Heat of formation + Delta-G solvation = -56.968921 kcal Electronic energy + Delta-G solvation = -27236.627899 eV Core-core repulsion = 23748.559666 eV Total energy + Delta-G solvation = -3488.068232 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 308.221 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.60824 -38.30421 -36.84831 -35.88654 -33.15089 -32.65046 -30.88661 -30.32078 -29.31974 -26.94716 -26.41756 -24.20431 -23.06221 -22.53128 -22.38179 -20.91404 -20.13260 -19.84873 -18.92398 -16.77840 -16.51668 -16.35126 -15.41100 -15.11365 -14.72116 -14.43188 -14.28975 -14.11923 -13.74704 -13.64418 -13.47770 -13.29281 -12.97915 -12.83996 -12.66083 -12.41964 -12.19994 -12.00271 -11.87091 -11.58425 -11.45980 -11.35740 -11.23088 -11.07364 -10.95112 -10.85776 -10.70670 -10.45817 -10.43259 -10.32061 -10.18051 -10.08016 -10.02732 -9.18467 -8.67647 -8.43557 -8.25940 -7.40275 -6.29184 -3.98668 2.98330 3.41620 3.45876 3.48827 3.67544 4.35781 4.49202 4.55986 4.60067 4.69931 4.79964 4.88102 5.00482 5.06301 5.16944 5.26645 5.34899 5.39159 5.42590 5.44748 5.46696 5.49706 5.51169 5.61679 5.67928 5.72455 5.78801 5.83916 5.84383 5.90055 5.95794 5.98708 6.02745 6.04689 6.08300 6.17622 6.20246 6.22924 6.36858 6.42991 6.53860 6.66513 6.83604 7.11707 7.20691 7.53244 7.82822 8.01451 8.35812 8.61575 8.65063 8.93202 9.72776 11.09640 Molecular weight = 308.22amu Principal moments of inertia in cm(-1) A = 0.016808 B = 0.003717 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.461233 B = 7531.642031 C = 8251.547450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.061 3.939 3 N -0.544 5.544 4 C 0.187 3.813 5 C -0.591 4.591 6 H 0.055 0.945 7 C 0.014 3.986 8 N -0.911 5.911 9 Si 1.072 2.928 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.288 1.288 13 C 0.285 3.715 14 N -0.601 5.601 15 C 0.109 3.891 16 C -0.131 4.131 17 C -0.118 4.118 18 H 0.101 0.899 19 C -0.064 4.064 20 C -0.115 4.115 21 C -0.118 4.118 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.120 4.120 25 C 0.524 3.476 26 O -0.526 6.526 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.043 0.957 30 H 0.090 0.910 31 H 0.019 0.981 32 H -0.022 1.022 33 H 0.026 0.974 34 H 0.269 0.731 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.061 0.939 48 H 0.058 0.942 49 H 0.060 0.940 50 H 0.074 0.926 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.820 11.961 9.689 21.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.068 4.068 3 N -0.270 5.270 4 C 0.062 3.938 5 C -0.630 4.630 6 H 0.073 0.927 7 C -0.190 4.190 8 N -0.547 5.547 9 Si 0.900 3.100 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.215 1.215 13 C 0.073 3.927 14 N -0.336 5.336 15 C -0.014 4.014 16 C -0.169 4.169 17 C -0.140 4.140 18 H 0.120 0.880 19 C -0.083 4.083 20 C -0.152 4.152 21 C -0.155 4.155 22 C -0.158 4.158 23 C -0.155 4.155 24 C -0.158 4.158 25 C 0.311 3.689 26 O -0.402 6.402 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.109 0.891 31 H 0.037 0.963 32 H -0.004 1.004 33 H 0.044 0.956 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.101 0.899 40 H 0.107 0.893 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.080 0.920 48 H 0.077 0.923 49 H 0.079 0.921 50 H 0.093 0.907 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.344 11.737 8.366 19.642 hybrid contribution -0.709 -0.250 1.682 1.842 sum -14.053 11.487 10.047 20.746 Atomic orbital electron populations 1.21824 0.96405 1.00434 1.01479 1.21915 0.94049 0.89455 1.01361 1.61800 1.22753 1.16281 1.26215 1.19830 0.81340 0.96309 0.96319 1.21938 0.95455 1.48763 0.96801 0.92661 1.25827 0.92137 0.95222 1.05855 1.70742 1.31462 1.41366 1.11177 0.83510 0.75973 0.76094 0.74414 1.20851 1.21545 1.21492 1.21723 1.00206 0.78936 0.91835 1.48263 1.12681 1.06357 1.66257 1.21928 0.86872 0.93245 0.99400 1.22744 0.97057 0.96407 1.00700 1.22035 0.98920 0.95078 0.97967 0.88037 1.20926 0.97637 0.95601 0.94159 1.21660 1.00692 0.95495 0.97357 1.21518 0.97468 0.99978 0.96571 1.21554 0.97193 0.97364 0.99649 1.21516 1.00375 0.96077 0.97568 1.21635 0.96802 1.01487 0.95839 1.20697 0.84291 0.87334 0.76623 1.90720 1.19255 1.83712 1.46486 0.92213 0.93084 0.93798 0.89148 0.96292 1.00434 0.95567 0.92031 0.90656 0.92607 0.90057 0.92045 0.89864 0.89271 0.91119 0.91694 0.91486 0.92135 0.92149 0.92413 0.92025 0.92300 0.92124 0.90736 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.99 37.15 0.37 -1.74 16 2 C 0.06 1.16 5.48 -3.83 -0.02 1.14 16 3 N -0.54 -11.82 4.55 -239.98 -1.09 -12.91 16 4 C 0.19 5.11 3.87 -4.97 -0.02 5.09 16 5 C -0.59 -17.23 8.29 -34.44 -0.29 -17.52 16 6 H 0.06 1.59 7.25 -52.48 -0.38 1.21 16 7 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 8 N -0.91 -29.17 13.65 55.43 0.76 -28.41 16 9 Si 1.07 26.01 29.90 -169.99 -5.08 20.93 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 13 C 0.28 5.33 5.66 -63.32 -0.36 4.97 16 14 N -0.60 -10.37 3.17 -175.90 -0.56 -10.93 16 15 C 0.11 1.40 7.35 -3.12 -0.02 1.38 16 16 C -0.13 -1.49 6.53 -25.10 -0.16 -1.66 16 17 C -0.12 -1.62 2.51 -90.63 -0.23 -1.85 16 18 H 0.10 1.45 8.14 -51.92 -0.42 1.03 16 19 C -0.06 -0.72 1.77 -90.62 -0.16 -0.88 16 20 C -0.11 -1.00 4.97 -26.73 -0.13 -1.14 16 21 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 22 C -0.12 -1.02 5.92 -26.73 -0.16 -1.17 16 23 C -0.12 -1.18 5.92 -26.76 -0.16 -1.34 16 24 C -0.12 -1.48 4.97 -26.76 -0.13 -1.62 16 25 C 0.52 9.77 6.41 -10.86 -0.07 9.70 16 26 O -0.53 -12.15 15.68 5.55 0.09 -12.07 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.04 0.58 6.55 -51.93 -0.34 0.24 16 30 H 0.09 1.95 6.59 -51.93 -0.34 1.60 16 31 H 0.02 0.35 8.05 -51.93 -0.42 -0.07 16 32 H -0.02 -0.65 7.99 -51.93 -0.41 -1.06 16 33 H 0.03 0.80 6.97 -51.93 -0.36 0.44 16 34 H 0.27 8.83 7.22 -40.82 -0.29 8.54 16 35 H 0.08 1.17 6.18 -51.93 -0.32 0.85 16 36 H 0.06 1.17 7.43 -51.93 -0.39 0.79 16 37 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.09 0.74 5.85 -51.93 -0.30 0.44 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.51 6.13 -51.93 -0.32 0.19 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.07 1.14 6.54 -51.93 -0.34 0.80 16 51 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 384.18 15.07 5.79 5.79 Total: -1.00 -34.18 384.18 -11.25 -45.44 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -9.36 Total: -0.44 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -1.80 Total: -7.40 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.89 Total: -52.26 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.09 Total: -12.07 kcal Atomic # 14 Polarization: 26.01 SS G_CDS: -5.08 Total: 20.93 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.18 -11.25 -45.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853492126.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.531 kcal (2) G-P(sol) polarization free energy of solvation -34.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds