Wall clock time and date at job start Fri Apr 10 2020 22:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00197 * 2 1 4 4 H 1.48496 * 109.46823 * 239.99579 * 3 2 1 5 5 H 1.48497 * 109.47305 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47085 * 119.99976 * 3 2 1 7 7 C 1.37877 * 119.99436 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99772 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00107 * 0.02562 * 7 2 1 10 10 H 1.08993 * 109.52308 * 300.07803 * 9 7 2 11 11 C 1.53042 * 109.49626 * 179.97438 * 9 7 2 12 12 C 1.53043 * 109.54043 * 178.68349 * 11 9 7 13 13 C 1.53192 * 109.30854 * 61.36261 * 12 11 9 14 14 N 1.46921 * 108.77829 * 305.36854 * 13 12 11 15 15 C 1.34788 * 120.63040 * 233.59199 * 14 13 12 16 16 O 1.21583 * 119.99873 * 187.38567 * 15 14 13 17 17 N 1.34777 * 119.99792 * 7.37687 * 15 14 13 18 18 C 1.39967 * 119.99817 * 189.10615 * 17 15 14 19 19 C 1.38890 * 120.48279 * 335.80590 * 18 17 15 20 20 N 1.31785 * 120.69664 * 179.97438 * 19 18 17 21 21 C 1.31879 * 121.80568 * 359.97438 * 20 19 18 22 22 C 1.38355 * 120.89860 * 0.02562 * 21 20 19 23 23 Cl 1.73596 * 120.39167 * 180.02562 * 22 21 20 24 24 C 1.38650 * 119.21200 * 0.02562 * 22 21 20 25 25 C 1.46926 * 118.74190 * 53.86057 * 14 13 12 26 26 H 0.97006 * 119.99349 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46210 * 58.65917 * 11 9 7 28 28 H 1.09006 * 109.45051 * 298.69825 * 11 9 7 29 29 H 1.08996 * 109.49125 * 301.41542 * 12 11 9 30 30 H 1.08993 * 109.49623 * 181.31757 * 12 11 9 31 31 H 1.09003 * 109.57988 * 185.57917 * 13 12 11 32 32 H 1.09000 * 109.70406 * 65.22883 * 13 12 11 33 33 H 0.96998 * 119.99904 * 9.10030 * 17 15 14 34 34 H 1.08003 * 119.65250 * 359.70108 * 19 18 17 35 35 H 1.07995 * 119.55093 * 179.97438 * 21 20 19 36 36 H 1.07999 * 120.82767 * 179.97438 * 24 22 21 37 37 H 1.09000 * 109.58400 * 65.92550 * 25 14 13 38 38 H 1.08994 * 109.58870 * 186.35459 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 1 0.6225 -2.5569 0.8892 11 6 2.2447 -3.6629 0.0005 12 6 1.4807 -4.9886 0.0337 13 6 0.6054 -5.1002 -1.2186 14 7 -0.2530 -3.9109 -1.3032 15 6 -1.5895 -4.0359 -1.4256 16 8 -2.2758 -3.0532 -1.6293 17 7 -2.1650 -5.2503 -1.3224 18 6 -3.5194 -5.4118 -1.6364 19 6 -4.3923 -4.3338 -1.5664 20 7 -5.6682 -4.4810 -1.8616 21 6 -6.1660 -5.6445 -2.2324 22 6 -5.3598 -6.7650 -2.3258 23 17 -6.0289 -8.2900 -2.8160 24 6 -4.0112 -6.6554 -2.0233 25 6 0.3735 -2.5827 -1.2577 26 1 -0.4849 0.8402 -0.0004 27 1 2.8871 -3.5919 0.8783 28 1 2.8558 -3.6184 -0.9011 29 1 0.8505 -5.0230 0.9223 30 1 2.1894 -5.8164 0.0573 31 1 -0.0144 -5.9944 -1.1525 32 1 1.2374 -5.1585 -2.1048 33 1 -1.6405 -6.0123 -1.0306 34 1 -4.0224 -3.3656 -1.2627 35 1 -7.2175 -5.7240 -2.4655 36 1 -3.3581 -7.5132 -2.0871 37 1 0.9888 -2.4384 -2.1458 38 1 -0.3994 -1.8153 -1.2175 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932125860.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:14:04 Heat of formation + Delta-G solvation = 9.691913 kcal Electronic energy + Delta-G solvation = -23075.424191 eV Core-core repulsion = 19558.030559 eV Total energy + Delta-G solvation = -3517.393632 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 309.098 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.95946 -39.52767 -37.24053 -36.75368 -35.08250 -33.48250 -32.05113 -31.88992 -30.06665 -29.51423 -25.22124 -24.98494 -23.90936 -23.04157 -21.98192 -20.44964 -19.19121 -18.21656 -17.44757 -17.02699 -16.36891 -16.14850 -15.42014 -14.82339 -14.66467 -14.34725 -14.24323 -13.95480 -13.61676 -13.35789 -13.05956 -12.81317 -12.64429 -12.45547 -12.12838 -12.04175 -11.49106 -11.10364 -11.04773 -10.96257 -10.60765 -10.52196 -10.32072 -10.01675 -9.79505 -9.49952 -9.43782 -9.21891 -9.08179 -8.52142 -8.35501 -7.84681 -6.06159 -4.14904 0.89816 1.02209 1.78548 2.75461 3.28961 3.34032 3.35770 3.36478 3.73434 3.99626 4.38769 4.53543 4.59926 4.73369 4.90432 5.07391 5.17910 5.24211 5.32015 5.46539 5.71286 5.81902 5.89141 5.99786 6.15013 6.19049 6.40424 6.50815 6.65512 6.77831 6.84565 6.88168 7.12582 7.19821 7.60141 7.78245 7.88062 7.93392 8.19094 8.30698 8.78889 8.89100 9.51228 10.99363 Molecular weight = 309.10amu Principal moments of inertia in cm(-1) A = 0.024546 B = 0.003231 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.439896 B = 8664.744442 C = 9664.135006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.058 0.942 9 C 0.040 3.960 10 H 0.030 0.970 11 C -0.111 4.111 12 C -0.135 4.135 13 C 0.111 3.889 14 N -0.611 5.611 15 C 0.700 3.300 16 O -0.560 6.560 17 N -0.684 5.684 18 C 0.145 3.855 19 C 0.087 3.913 20 N -0.446 5.446 21 C 0.076 3.924 22 C -0.067 4.067 23 Cl -0.062 7.062 24 C -0.117 4.117 25 C 0.126 3.874 26 H 0.265 0.735 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.407 0.593 34 H 0.204 0.796 35 H 0.161 0.839 36 H 0.144 0.856 37 H 0.045 0.955 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.890 -16.766 -3.622 18.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.077 0.923 9 C 0.021 3.979 10 H 0.048 0.952 11 C -0.149 4.149 12 C -0.173 4.173 13 C -0.012 4.012 14 N -0.346 5.346 15 C 0.402 3.598 16 O -0.437 6.437 17 N -0.333 5.333 18 C 0.045 3.955 19 C -0.073 4.073 20 N -0.154 5.154 21 C -0.082 4.082 22 C -0.096 4.096 23 Cl -0.033 7.033 24 C -0.147 4.147 25 C 0.006 3.994 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.245 0.755 34 H 0.220 0.780 35 H 0.178 0.822 36 H 0.162 0.838 37 H 0.064 0.936 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.013 -15.256 -3.771 17.209 hybrid contribution 1.361 -0.637 0.008 1.503 sum -5.651 -15.893 -3.763 17.283 Atomic orbital electron populations 1.69856 1.05739 1.27144 1.48949 1.25049 0.94910 0.99307 0.94684 0.86634 0.79579 0.83083 0.78583 1.20232 1.21196 1.20288 1.21018 0.92898 0.90025 1.52268 0.92350 1.19068 0.92610 0.92354 0.93857 0.95199 1.21631 0.98595 0.93857 1.00788 1.21968 0.98713 0.99464 0.97143 1.21608 0.93476 0.86942 0.99213 1.47915 1.02791 1.09695 1.74214 1.15946 0.83047 0.82214 0.78549 1.90785 1.60901 1.36406 1.55569 1.42926 1.08200 1.11998 1.70131 1.18683 0.84651 0.94492 0.97718 1.24276 0.86771 1.01086 0.95210 1.68043 1.14346 1.23479 1.09579 1.22769 1.00374 0.86712 0.98341 1.21776 0.94075 0.88781 1.04973 1.98369 1.85306 1.29689 1.89962 1.21085 0.94514 0.97673 1.01398 1.22455 0.98478 0.79731 0.98699 0.92460 0.92831 0.93041 0.92034 0.92014 0.92211 0.91430 0.75530 0.78028 0.82164 0.83806 0.93642 0.85749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.73 11.41 55.43 0.63 -24.09 16 2 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 20.71 29.54 -169.99 -5.02 15.68 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -13.57 8.56 -34.44 -0.29 -13.87 16 8 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 9 C 0.04 0.93 2.26 -91.43 -0.21 0.73 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 11 C -0.11 -2.03 5.10 -26.69 -0.14 -2.17 16 12 C -0.13 -1.91 6.08 -26.61 -0.16 -2.07 16 13 C 0.11 1.51 6.42 -3.71 -0.02 1.48 16 14 N -0.61 -11.13 2.97 -178.24 -0.53 -11.66 16 15 C 0.70 12.92 8.20 -86.91 -0.71 12.21 16 16 O -0.56 -12.50 12.62 5.29 0.07 -12.43 16 17 N -0.68 -9.46 5.23 -14.13 -0.07 -9.54 16 18 C 0.15 2.02 6.51 -83.54 -0.54 1.48 16 19 C 0.09 1.41 10.05 -17.33 -0.17 1.24 16 20 N -0.45 -6.81 10.35 -13.06 -0.14 -6.94 16 21 C 0.08 0.94 10.98 -17.49 -0.19 0.74 16 22 C -0.07 -0.75 6.34 -39.39 -0.25 -0.99 16 23 Cl -0.06 -0.58 28.99 -51.86 -1.50 -2.08 16 24 C -0.12 -1.31 9.89 -39.07 -0.39 -1.70 16 25 C 0.13 2.86 5.41 -3.49 -0.02 2.84 16 26 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.60 5.64 -51.93 -0.29 0.30 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.41 4.26 6.39 -40.82 -0.26 4.00 16 34 H 0.20 3.84 5.30 -52.49 -0.28 3.56 16 35 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.12 3.33 5.20 -51.93 -0.27 3.06 16 LS Contribution 325.20 15.07 4.90 4.90 Total: -1.00 -29.45 325.20 -9.30 -38.75 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -4.45 Total: 5.87 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -3.19 Total: 1.54 kcal Atomic # 7 Polarization: -52.13 SS G_CDS: -0.11 Total: -52.23 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.07 Total: -12.43 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.50 Total: -2.08 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.45 -9.30 -38.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932125860.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.445 kcal (2) G-P(sol) polarization free energy of solvation -29.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds