Wall clock time and date at job start Fri Apr 10 2020 22:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99837 * 2 1 4 4 H 1.48499 * 109.46695 * 269.99767 * 3 2 1 5 5 H 1.48503 * 109.47145 * 29.99365 * 3 2 1 6 6 H 1.48497 * 109.47136 * 149.99774 * 3 2 1 7 7 C 1.38806 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00101 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99805 * 0.02562 * 7 2 1 10 10 C 1.46507 * 119.99802 * 179.97438 * 9 7 2 11 11 H 1.08994 * 112.85140 * 23.80735 * 10 9 7 12 12 C 1.53788 * 113.61219 * 154.99950 * 10 9 7 13 13 C 1.53782 * 87.08118 * 89.20104 * 12 10 9 14 14 H 1.09004 * 113.61267 * 270.80414 * 13 12 10 15 15 C 1.52996 * 113.61548 * 139.97841 * 13 12 10 16 16 N 1.46498 * 109.47059 * 174.99850 * 15 13 12 17 17 C 1.34777 * 119.99828 * 179.72339 * 16 15 13 18 18 O 1.21523 * 119.99904 * 0.28092 * 17 16 15 19 19 C 1.48115 * 120.00153 * 180.27653 * 17 16 15 20 20 C 1.39347 * 119.70850 * 179.97438 * 19 17 16 21 21 C 1.38519 * 119.07431 * 179.97438 * 20 19 17 22 22 C 1.38762 * 118.48046 * 0.02562 * 21 20 19 23 23 Cl 1.73608 * 120.33768 * 179.97438 * 22 21 20 24 24 C 1.38720 * 119.32823 * 359.97438 * 22 21 20 25 25 N 1.31495 * 120.87607 * 359.72350 * 24 22 21 26 26 C 1.53782 * 113.69278 * 252.53464 * 10 9 7 27 27 H 0.96998 * 120.00291 * 0.02562 * 1 2 3 28 28 H 0.96997 * 120.00365 * 0.02562 * 9 7 2 29 29 H 1.09000 * 113.61208 * 334.65527 * 12 10 9 30 30 H 1.08999 * 113.68961 * 203.76173 * 12 10 9 31 31 H 1.09004 * 109.47066 * 55.00118 * 15 13 12 32 32 H 1.08994 * 109.46974 * 295.00265 * 15 13 12 33 33 H 0.97001 * 120.00384 * 0.02562 * 16 15 13 34 34 H 1.07998 * 120.46010 * 359.97438 * 20 19 17 35 35 H 1.08001 * 120.75802 * 179.97438 * 21 20 19 36 36 H 1.07994 * 119.56622 * 180.02562 * 24 22 21 37 37 H 1.08995 * 113.61722 * 156.32604 * 26 10 9 38 38 H 1.09001 * 113.60922 * 25.41977 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0005 11 1 3.0656 -3.5638 0.4060 12 6 1.2602 -4.8288 0.5961 13 6 0.7222 -5.0805 -0.8224 14 1 -0.1893 -4.5271 -1.0483 15 6 0.6227 -6.5633 -1.1860 16 7 -0.0077 -6.7024 -2.5011 17 6 -0.1955 -7.9268 -3.0322 18 8 0.1533 -8.9156 -2.4179 19 6 -0.8272 -8.0672 -4.3645 20 6 -1.0180 -9.3360 -4.9080 21 6 -1.6106 -9.4521 -6.1547 22 6 -1.9922 -8.2936 -6.8164 23 17 -2.7384 -8.3830 -8.3814 24 6 -1.7714 -7.0634 -6.2148 25 7 -1.2119 -6.9835 -5.0274 26 6 2.0011 -4.4032 -1.3427 27 1 -0.4850 0.8400 -0.0004 28 1 0.3556 -2.3880 -0.0002 29 1 0.4928 -4.5188 1.3054 30 1 1.8859 -5.6366 0.9755 31 1 0.0217 -7.0812 -0.4384 32 1 1.6217 -6.9984 -1.2140 33 1 -0.2858 -5.9132 -2.9916 34 1 -0.7082 -10.2166 -4.3649 35 1 -1.7712 -10.4220 -6.6018 36 1 -2.0672 -6.1594 -6.7262 37 1 2.8305 -5.0941 -1.4939 38 1 1.8319 -3.7497 -2.1985 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086538310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:14:08 Heat of formation + Delta-G solvation = 23.095229 kcal Electronic energy + Delta-G solvation = -21730.919357 eV Core-core repulsion = 18214.106937 eV Total energy + Delta-G solvation = -3516.812420 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 309.098 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.01821 -39.40782 -38.41310 -37.15236 -34.80916 -33.34633 -32.90769 -31.76368 -30.14114 -27.59448 -25.07234 -24.86109 -24.17057 -23.55997 -21.75764 -20.95584 -18.82068 -18.09860 -17.40573 -17.30096 -16.87706 -15.77771 -15.65598 -15.37603 -14.94201 -14.57581 -14.38304 -14.07254 -13.86644 -13.59045 -13.29024 -12.96881 -12.87834 -12.47611 -12.25783 -11.92006 -11.82253 -11.40650 -11.04881 -10.84670 -10.62433 -10.49026 -10.43718 -10.18200 -10.09068 -9.83546 -9.69208 -9.52680 -9.46964 -9.02775 -8.88371 -7.00160 -5.80725 -3.09800 0.02452 0.61136 1.43443 2.38932 2.94474 3.39686 3.41941 3.47286 3.48871 3.74434 4.13355 4.27654 4.40470 4.55704 4.63459 5.04041 5.05215 5.16492 5.22278 5.29511 5.38279 5.45284 5.61714 5.68576 5.83240 5.87777 5.94401 6.09323 6.20873 6.34391 6.37689 6.58542 6.75644 6.89118 7.04689 7.09002 7.47995 7.68962 8.02934 8.38454 9.49118 10.06705 10.40884 11.41711 Molecular weight = 309.10amu Principal moments of inertia in cm(-1) A = 0.017118 B = 0.002466 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.328539 B =11352.063834 C =12708.940423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.168 3.832 11 H 0.062 0.938 12 C -0.147 4.147 13 C -0.120 4.120 14 H 0.094 0.906 15 C 0.128 3.872 16 N -0.699 5.699 17 C 0.566 3.434 18 O -0.537 6.537 19 C 0.086 3.914 20 C -0.101 4.101 21 C -0.072 4.072 22 C -0.073 4.073 23 Cl -0.047 7.047 24 C 0.117 3.883 25 N -0.440 5.440 26 C -0.169 4.169 27 H 0.256 0.744 28 H 0.385 0.615 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.414 0.586 34 H 0.159 0.841 35 H 0.153 0.847 36 H 0.174 0.826 37 H 0.067 0.933 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.541 -20.208 -13.681 24.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.055 3.945 11 H 0.080 0.920 12 C -0.187 4.187 13 C -0.139 4.139 14 H 0.113 0.887 15 C 0.005 3.995 16 N -0.349 5.349 17 C 0.350 3.650 18 O -0.414 6.414 19 C -0.052 4.052 20 C -0.121 4.121 21 C -0.099 4.099 22 C -0.103 4.103 23 Cl -0.018 7.018 24 C -0.044 4.044 25 N -0.151 5.151 26 C -0.210 4.210 27 H 0.066 0.934 28 H 0.219 0.781 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.250 0.750 34 H 0.176 0.824 35 H 0.171 0.829 36 H 0.191 0.809 37 H 0.086 0.914 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.080 -19.901 -12.893 24.061 hybrid contribution -0.342 0.446 -0.987 1.136 sum -4.422 -19.455 -13.880 24.304 Atomic orbital electron populations 1.69660 1.05129 1.25786 1.57473 1.24763 0.95542 0.97788 1.02800 0.86171 0.78666 0.83704 0.77535 1.21681 1.21761 1.20703 1.19287 0.91117 0.83971 1.42934 0.90996 1.42171 1.05692 0.99428 1.87118 1.21049 0.95097 0.85590 0.92741 0.91955 1.23449 1.00515 0.99708 0.95032 1.22725 0.99764 0.92726 0.98672 0.88736 1.21599 0.97720 0.97435 0.82698 1.45958 1.60066 1.08202 1.20686 1.17766 0.79134 0.84062 0.84039 1.90793 1.51493 1.37748 1.61336 1.21420 0.98329 0.89782 0.95693 1.22160 0.96339 0.98984 0.94660 1.21584 0.95716 0.98547 0.94011 1.22385 1.01356 0.96474 0.90054 1.98408 1.80194 1.98638 1.24557 1.22888 0.94487 0.96431 0.90592 1.67759 1.08463 1.31739 1.07174 1.23898 0.95578 0.99662 1.01843 0.93436 0.78095 0.91282 0.90428 0.91441 0.91208 0.74966 0.82358 0.82914 0.80880 0.91396 0.91423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.77 13.06 55.49 0.72 -27.05 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.15 29.55 -169.99 -5.02 17.12 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 7 C -0.24 -6.62 9.97 -15.06 -0.15 -6.77 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.71 -17.29 5.31 -52.63 -0.28 -17.57 16 10 C 0.17 3.24 4.56 -67.11 -0.31 2.93 16 11 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 12 C -0.15 -2.32 7.39 -25.91 -0.19 -2.52 16 13 C -0.12 -1.79 3.63 -89.80 -0.33 -2.12 16 14 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 15 C 0.13 1.71 5.51 -4.04 -0.02 1.69 16 16 N -0.70 -9.07 5.54 -61.17 -0.34 -9.41 16 17 C 0.57 7.59 7.81 -12.21 -0.10 7.49 16 18 O -0.54 -8.40 16.32 5.35 0.09 -8.32 16 19 C 0.09 0.97 6.75 -83.01 -0.56 0.41 16 20 C -0.10 -0.89 9.63 -39.07 -0.38 -1.27 16 21 C -0.07 -0.51 9.97 -39.28 -0.39 -0.90 16 22 C -0.07 -0.56 6.35 -39.21 -0.25 -0.81 16 23 Cl -0.05 -0.32 28.99 -51.86 -1.50 -1.82 16 24 C 0.12 1.00 10.98 -17.52 -0.19 0.81 16 25 N -0.44 -4.78 9.54 -9.77 -0.09 -4.87 16 26 C -0.17 -2.80 7.43 -25.91 -0.19 -2.99 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.39 9.98 7.90 -40.82 -0.32 9.66 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.94 7.84 -51.93 -0.41 0.53 16 33 H 0.41 5.19 7.80 -40.82 -0.32 4.87 16 34 H 0.16 1.26 7.64 -52.49 -0.40 0.86 16 35 H 0.15 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.07 1.01 7.90 -51.93 -0.41 0.60 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 345.23 15.07 5.20 5.20 Total: -1.00 -31.17 345.23 -9.16 -40.33 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -4.78 Total: 10.88 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -3.15 Total: -4.50 kcal Atomic # 7 Polarization: -58.92 SS G_CDS: 0.01 Total: -58.91 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: 0.09 Total: -8.32 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.50 Total: -1.82 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.17 -9.16 -40.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086538310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.427 kcal (2) G-P(sol) polarization free energy of solvation -31.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds