Wall clock time and date at job start Fri Apr 10 2020 22:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99837 * 2 1 4 4 H 1.48499 * 109.46695 * 269.99767 * 3 2 1 5 5 H 1.48503 * 109.47145 * 29.99365 * 3 2 1 6 6 H 1.48497 * 109.47136 * 149.99774 * 3 2 1 7 7 C 1.38806 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00101 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99805 * 0.02562 * 7 2 1 10 10 C 1.46507 * 119.99802 * 179.97438 * 9 7 2 11 11 H 1.08994 * 112.85140 * 23.80735 * 10 9 7 12 12 C 1.53788 * 113.61219 * 154.99950 * 10 9 7 13 13 C 1.53782 * 87.08118 * 89.20104 * 12 10 9 14 14 H 1.09004 * 113.61267 * 270.80414 * 13 12 10 15 15 C 1.52996 * 113.61548 * 139.97841 * 13 12 10 16 16 N 1.46498 * 109.47059 * 174.99850 * 15 13 12 17 17 C 1.34777 * 119.99828 * 179.72339 * 16 15 13 18 18 O 1.21523 * 119.99904 * 0.28092 * 17 16 15 19 19 C 1.48115 * 120.00153 * 180.27653 * 17 16 15 20 20 C 1.39347 * 119.70850 * 179.97438 * 19 17 16 21 21 C 1.38519 * 119.07431 * 179.97438 * 20 19 17 22 22 C 1.38762 * 118.48046 * 0.02562 * 21 20 19 23 23 Cl 1.73608 * 120.33768 * 179.97438 * 22 21 20 24 24 C 1.38720 * 119.32823 * 359.97438 * 22 21 20 25 25 N 1.31495 * 120.87607 * 359.72350 * 24 22 21 26 26 C 1.53782 * 113.69278 * 252.53464 * 10 9 7 27 27 H 0.96998 * 120.00291 * 0.02562 * 1 2 3 28 28 H 0.96997 * 120.00365 * 0.02562 * 9 7 2 29 29 H 1.09000 * 113.61208 * 334.65527 * 12 10 9 30 30 H 1.08999 * 113.68961 * 203.76173 * 12 10 9 31 31 H 1.09004 * 109.47066 * 55.00118 * 15 13 12 32 32 H 1.08994 * 109.46974 * 295.00265 * 15 13 12 33 33 H 0.97001 * 120.00384 * 0.02562 * 16 15 13 34 34 H 1.07998 * 120.46010 * 359.97438 * 20 19 17 35 35 H 1.08001 * 120.75802 * 179.97438 * 21 20 19 36 36 H 1.07994 * 119.56622 * 180.02562 * 24 22 21 37 37 H 1.08995 * 113.61722 * 156.32604 * 26 10 9 38 38 H 1.09001 * 113.60922 * 25.41977 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0005 11 1 3.0656 -3.5638 0.4060 12 6 1.2602 -4.8288 0.5961 13 6 0.7222 -5.0805 -0.8224 14 1 -0.1893 -4.5271 -1.0483 15 6 0.6227 -6.5633 -1.1860 16 7 -0.0077 -6.7024 -2.5011 17 6 -0.1955 -7.9268 -3.0322 18 8 0.1533 -8.9156 -2.4179 19 6 -0.8272 -8.0672 -4.3645 20 6 -1.0180 -9.3360 -4.9080 21 6 -1.6106 -9.4521 -6.1547 22 6 -1.9922 -8.2936 -6.8164 23 17 -2.7384 -8.3830 -8.3814 24 6 -1.7714 -7.0634 -6.2148 25 7 -1.2119 -6.9835 -5.0274 26 6 2.0011 -4.4032 -1.3427 27 1 -0.4850 0.8400 -0.0004 28 1 0.3556 -2.3880 -0.0002 29 1 0.4928 -4.5188 1.3054 30 1 1.8859 -5.6366 0.9755 31 1 0.0217 -7.0812 -0.4384 32 1 1.6217 -6.9984 -1.2140 33 1 -0.2858 -5.9132 -2.9916 34 1 -0.7082 -10.2166 -4.3649 35 1 -1.7712 -10.4220 -6.6018 36 1 -2.0672 -6.1594 -6.7262 37 1 2.8305 -5.0941 -1.4939 38 1 1.8319 -3.7497 -2.1985 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086538310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:14:07 Heat of formation + Delta-G solvation = 2.611237 kcal Electronic energy + Delta-G solvation = -21731.807610 eV Core-core repulsion = 18214.106937 eV Total energy + Delta-G solvation = -3517.700673 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 309.098 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.80834 -40.49677 -39.67145 -37.74847 -36.09727 -35.03098 -33.68806 -32.57459 -31.94508 -28.87118 -26.42766 -26.03301 -25.30873 -24.75913 -23.08242 -21.91213 -20.04961 -19.40565 -19.04654 -18.15458 -17.64937 -16.85890 -16.64189 -16.62962 -16.21405 -15.85718 -15.57677 -15.30327 -14.99977 -14.67600 -14.53544 -14.35423 -13.76913 -13.63511 -13.29351 -13.10231 -12.93329 -12.90598 -12.62273 -12.40148 -12.16230 -12.06923 -11.69974 -11.48776 -11.34056 -11.07125 -10.96268 -10.84574 -10.69379 -10.28823 -10.01002 -8.99217 -7.94638 -5.22938 -0.70053 -0.01359 0.83310 1.48372 1.49609 1.50838 1.58091 1.99890 2.56391 2.60794 2.97530 3.37882 3.54915 3.59102 3.72151 3.74516 3.79073 3.87959 3.93901 4.14961 4.33291 4.41352 4.55552 4.63206 4.71783 4.74345 4.81047 4.93915 4.99827 5.11830 5.21620 5.24675 5.35637 5.46061 5.54360 5.67150 6.26090 6.29110 6.56907 7.01667 7.33950 8.11418 8.33481 9.28730 Molecular weight = 309.10amu Principal moments of inertia in cm(-1) A = 0.017118 B = 0.002466 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.328539 B =11352.063834 C =12708.940423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.972 3.028 4 H -0.288 1.288 5 H -0.296 1.296 6 H -0.269 1.269 7 C -0.242 4.242 8 H 0.077 0.923 9 N -0.720 5.720 10 C 0.144 3.856 11 H 0.061 0.939 12 C -0.132 4.132 13 C -0.104 4.104 14 H 0.078 0.922 15 C 0.137 3.863 16 N -0.700 5.700 17 C 0.566 3.434 18 O -0.564 6.564 19 C 0.062 3.938 20 C -0.098 4.098 21 C -0.062 4.062 22 C -0.068 4.068 23 Cl -0.034 7.034 24 C 0.109 3.891 25 N -0.461 5.461 26 C -0.155 4.155 27 H 0.251 0.749 28 H 0.374 0.626 29 H 0.058 0.942 30 H 0.109 0.891 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.415 0.585 34 H 0.166 0.834 35 H 0.184 0.816 36 H 0.191 0.809 37 H 0.093 0.907 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.041 -21.749 -14.800 26.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.802 3.198 4 H -0.215 1.215 5 H -0.223 1.223 6 H -0.194 1.194 7 C -0.373 4.373 8 H 0.095 0.905 9 N -0.358 5.358 10 C 0.034 3.966 11 H 0.079 0.921 12 C -0.171 4.171 13 C -0.123 4.123 14 H 0.097 0.903 15 C 0.014 3.986 16 N -0.349 5.349 17 C 0.351 3.649 18 O -0.443 6.443 19 C -0.076 4.076 20 C -0.119 4.119 21 C -0.088 4.088 22 C -0.098 4.098 23 Cl -0.005 7.005 24 C -0.052 4.052 25 N -0.172 5.172 26 C -0.195 4.195 27 H 0.060 0.940 28 H 0.206 0.794 29 H 0.077 0.923 30 H 0.127 0.873 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.252 0.748 34 H 0.184 0.816 35 H 0.202 0.798 36 H 0.207 0.793 37 H 0.111 0.889 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.541 -21.480 -14.018 25.893 hybrid contribution -0.499 0.838 -0.727 1.216 sum -4.041 -20.642 -14.745 25.687 Atomic orbital electron populations 1.69812 1.06575 1.26059 1.59564 1.25556 0.96388 1.01074 1.03813 0.85152 0.77742 0.79566 0.77381 1.21491 1.22298 1.19396 1.19674 0.91533 0.85189 1.40949 0.90528 1.42313 1.05326 1.00600 1.87582 1.21385 0.95143 0.84920 0.95162 0.92059 1.23343 0.99962 0.98664 0.95138 1.22502 0.98318 0.93633 0.97862 0.90330 1.21453 0.98204 0.95819 0.83101 1.45950 1.60010 1.08420 1.20557 1.18077 0.78591 0.83520 0.84711 1.90765 1.52824 1.38385 1.62350 1.21216 1.00143 0.90958 0.95245 1.22280 0.96073 0.98253 0.95301 1.21899 0.94159 0.99724 0.93021 1.22455 1.00579 0.96367 0.90377 1.98419 1.79867 1.98598 1.23648 1.23200 0.94186 0.97699 0.90083 1.67680 1.09327 1.32017 1.08199 1.23732 0.97317 0.99286 0.99168 0.94030 0.79396 0.92308 0.87293 0.91081 0.90613 0.74817 0.81639 0.79844 0.79267 0.88872 0.93642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.07 13.06 21.65 0.28 -58.78 16 2 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 3 Si 0.97 45.95 29.55 68.60 2.03 47.98 16 4 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 5 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 7 C -0.24 -13.32 9.97 84.03 0.84 -12.49 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.72 -35.80 5.31 -320.43 -1.70 -37.50 16 10 C 0.14 5.48 4.56 45.52 0.21 5.69 16 11 H 0.06 2.33 8.10 -2.39 -0.02 2.31 16 12 C -0.13 -3.99 7.39 31.12 0.23 -3.76 16 13 C -0.10 -3.03 3.63 -10.27 -0.04 -3.06 16 14 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 15 C 0.14 3.47 5.51 86.38 0.48 3.95 16 16 N -0.70 -17.84 5.54 -465.72 -2.58 -20.42 16 17 C 0.57 14.92 7.81 86.87 0.68 15.60 16 18 O -0.56 -17.34 16.32 -3.79 -0.06 -17.41 16 19 C 0.06 1.35 6.75 41.90 0.28 1.63 16 20 C -0.10 -1.60 9.63 22.60 0.22 -1.38 16 21 C -0.06 -0.72 9.97 22.46 0.22 -0.50 16 22 C -0.07 -0.90 6.35 22.51 0.14 -0.76 16 23 Cl -0.03 -0.38 28.99 -2.72 -0.08 -0.46 16 24 C 0.11 1.74 10.98 84.86 0.93 2.68 16 25 N -0.46 -9.74 9.54 -184.82 -1.76 -11.50 16 26 C -0.15 -4.99 7.43 31.12 0.23 -4.75 16 27 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 28 H 0.37 19.95 7.90 -92.71 -0.73 19.22 16 29 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.11 2.64 8.10 -2.39 -0.02 2.62 16 31 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 32 H 0.08 1.87 7.84 -2.39 -0.02 1.85 16 33 H 0.42 10.41 7.80 -92.71 -0.72 9.68 16 34 H 0.17 2.41 7.64 -2.91 -0.02 2.38 16 35 H 0.18 0.94 8.06 -2.91 -0.02 0.92 16 36 H 0.19 2.20 8.06 -2.91 -0.02 2.18 16 37 H 0.09 2.55 7.90 -2.39 -0.02 2.54 16 38 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -67.51 345.23 0.66 -66.85 By element: Atomic # 1 Polarization: 32.63 SS G_CDS: -0.35 Total: 32.28 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 4.89 Total: -1.03 kcal Atomic # 7 Polarization: -122.44 SS G_CDS: -5.77 Total: -128.21 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.06 Total: -17.41 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -0.08 Total: -0.46 kcal Total: -67.51 0.66 -66.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086538310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.460 kcal (2) G-P(sol) polarization free energy of solvation -67.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds