Wall clock time and date at job start Fri Apr 10 2020 22:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47216 * 353.00176 * 3 2 1 5 5 N 1.46504 * 109.47112 * 179.97438 * 4 3 2 6 6 C 1.46498 * 119.99717 * 269.99819 * 5 4 3 7 7 C 1.50697 * 109.47280 * 270.00166 * 6 5 4 8 8 H 1.08001 * 120.00263 * 359.97438 * 7 6 5 9 9 C 1.37884 * 120.00145 * 180.02562 * 7 6 5 10 10 N 1.31511 * 119.99876 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00026 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46750 * 89.99900 * 11 9 7 13 13 H 1.48497 * 109.47057 * 209.99547 * 11 9 7 14 14 H 1.48498 * 109.47096 * 330.00107 * 11 9 7 15 15 C 1.34774 * 120.00092 * 90.00142 * 5 4 3 16 16 O 1.21586 * 120.00040 * 180.02562 * 15 5 4 17 17 N 1.34773 * 119.99885 * 359.97438 * 15 5 4 18 18 C 1.40216 * 120.00189 * 185.08878 * 17 15 5 19 19 C 1.38966 * 120.08801 * 89.35184 * 18 17 15 20 20 F 1.35102 * 120.04216 * 359.71366 * 19 18 17 21 21 C 1.38341 * 119.92056 * 179.97438 * 19 18 17 22 22 C 1.38269 * 120.08233 * 0.02562 * 21 19 18 23 23 C 1.38270 * 120.16854 * 359.97438 * 22 21 19 24 24 C 1.38344 * 120.08305 * 0.02562 * 23 22 21 25 25 F 1.35104 * 120.04122 * 180.02562 * 24 23 22 26 26 H 1.09002 * 109.47307 * 233.00061 * 3 2 1 27 27 H 1.09000 * 109.46842 * 113.00040 * 3 2 1 28 28 H 1.09002 * 109.47077 * 59.99743 * 4 3 2 29 29 H 1.09000 * 109.47104 * 299.99703 * 4 3 2 30 30 H 1.09006 * 109.47506 * 30.00322 * 6 5 4 31 31 H 1.09007 * 109.46716 * 149.99990 * 6 5 4 32 32 H 0.96995 * 119.99938 * 180.02562 * 10 9 7 33 33 H 0.96999 * 120.00268 * 5.08642 * 17 15 5 34 34 H 1.07997 * 119.96013 * 179.97438 * 21 19 18 35 35 H 1.07997 * 119.91768 * 179.97438 * 22 21 19 36 36 H 1.07999 * 119.95915 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.4309 0.1758 5 7 4.5837 -1.4303 0.1751 6 6 5.3156 -1.5848 -1.0844 7 6 5.5673 -3.0479 -1.3430 8 1 5.2174 -3.7887 -0.6393 9 6 6.2452 -3.4409 -2.4776 10 7 6.6717 -2.5389 -3.3343 11 14 6.5577 -5.2545 -2.7977 12 1 5.4278 -5.8214 -3.5772 13 1 7.8179 -5.4113 -3.5674 14 1 6.6755 -5.9726 -1.5032 15 6 5.2580 -1.2876 1.3333 16 8 6.4739 -1.2867 1.3327 17 7 4.5846 -1.1450 2.4920 18 6 5.2819 -0.8900 3.6814 19 6 5.5476 0.4185 4.0663 20 9 5.1394 1.4475 3.2919 21 6 6.2354 0.6662 5.2408 22 6 6.6588 -0.3864 6.0312 23 6 6.3963 -1.6898 5.6516 24 6 5.7090 -1.9454 4.4784 25 9 5.4526 -3.2193 4.1086 26 1 2.9711 0.6193 0.8207 27 1 2.9711 0.4024 -0.9460 28 1 2.7555 -2.0495 -0.6450 29 1 2.7555 -1.8326 1.1217 30 1 4.7261 -1.1677 -1.9009 31 1 6.2679 -1.0584 -1.0181 32 1 7.1482 -2.8154 -4.1326 33 1 3.6174 -1.2188 2.5031 34 1 6.4427 1.6829 5.5404 35 1 7.1959 -0.1901 6.9473 36 1 6.7290 -2.5094 6.2712 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202037310.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:17:37 Heat of formation + Delta-G solvation = -52.492419 kcal Electronic energy + Delta-G solvation = -25202.842279 eV Core-core repulsion = 21130.955452 eV Total energy + Delta-G solvation = -4071.886827 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 309.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.01858 -48.94137 -40.08014 -38.61864 -36.89258 -35.36340 -34.58867 -32.78590 -30.88621 -30.46729 -29.66184 -27.06583 -24.15696 -23.62823 -22.98791 -22.22791 -19.74852 -18.48409 -18.03443 -17.56652 -17.32866 -16.91399 -16.41103 -15.86168 -15.68173 -15.46200 -15.27152 -14.89106 -14.65952 -14.52860 -14.41261 -13.93924 -13.74047 -13.23630 -12.86582 -12.56865 -12.45501 -12.35339 -12.11945 -12.05450 -11.93809 -11.77324 -11.26573 -11.00191 -10.91455 -10.60883 -10.18222 -9.74016 -9.54300 -9.25022 -9.01059 -8.88562 -8.45263 -7.86511 -6.06898 -4.11101 0.76842 0.83831 2.70983 2.80551 2.94319 3.22593 3.30244 3.37341 3.42341 3.66903 3.72475 3.91475 4.29256 4.40100 4.50759 4.53255 4.74256 4.92728 4.97829 5.12670 5.27888 5.33568 5.41404 5.69124 5.71405 5.78358 5.83744 5.96170 6.03139 6.34831 6.54935 6.89309 7.23733 7.39509 7.56134 7.56666 7.90523 8.18871 8.42578 8.89372 9.14114 9.54466 11.01178 Molecular weight = 309.10amu Principal moments of inertia in cm(-1) A = 0.010852 B = 0.005128 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.597230 B = 5459.401210 C = 7022.227056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.217 3.783 3 C -0.052 4.052 4 C 0.119 3.881 5 N -0.604 5.604 6 C 0.259 3.741 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.063 3.937 10 N -0.894 5.894 11 Si 0.897 3.103 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.707 3.293 16 O -0.564 6.564 17 N -0.709 5.709 18 C 0.096 3.904 19 C 0.136 3.864 20 F -0.124 7.124 21 C -0.164 4.164 22 C -0.061 4.061 23 C -0.164 4.164 24 C 0.139 3.861 25 F -0.121 7.121 26 H 0.107 0.893 27 H 0.120 0.880 28 H 0.099 0.901 29 H 0.067 0.933 30 H 0.038 0.962 31 H 0.048 0.952 32 H 0.264 0.736 33 H 0.403 0.597 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.586 6.321 17.777 19.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.122 5.122 2 C -0.101 4.101 3 C -0.094 4.094 4 C -0.007 4.007 5 N -0.339 5.339 6 C 0.141 3.859 7 C -0.568 4.568 8 H 0.076 0.924 9 C -0.139 4.139 10 N -0.533 5.533 11 Si 0.725 3.275 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.409 3.591 16 O -0.438 6.438 17 N -0.368 5.368 18 C 0.001 3.999 19 C 0.114 3.886 20 F -0.102 7.102 21 C -0.183 4.183 22 C -0.079 4.079 23 C -0.183 4.183 24 C 0.118 3.882 25 F -0.099 7.099 26 H 0.125 0.875 27 H 0.138 0.862 28 H 0.117 0.883 29 H 0.086 0.914 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.242 0.758 34 H 0.162 0.838 35 H 0.162 0.838 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.286 6.327 17.431 19.033 hybrid contribution 0.059 -1.120 -0.546 1.247 sum -4.226 5.207 16.885 18.168 Atomic orbital electron populations 1.81208 1.13001 1.08635 1.09360 1.29101 0.95083 0.93105 0.92818 1.19934 0.81327 1.01394 1.06758 1.21247 0.82413 0.93580 1.03489 1.47513 1.04394 1.74381 1.07582 1.19325 0.92446 0.97343 0.76830 1.21447 1.36697 0.92257 1.06354 0.92359 1.24900 0.95268 0.97830 0.95919 1.69915 1.38358 1.33149 1.11868 0.86514 0.77684 0.85074 0.78275 1.20652 1.21108 1.19898 1.15884 0.85451 0.77958 0.79774 1.90940 1.11278 1.56629 1.84955 1.42624 1.09616 1.79997 1.04531 1.17180 1.02887 0.90519 0.89340 1.17742 0.97350 0.83214 0.90247 1.91527 1.88050 1.56583 1.74047 1.21125 1.01466 1.01414 0.94330 1.20851 0.97087 0.90752 0.99240 1.21158 1.01837 0.98825 0.96482 1.17804 0.97564 0.78847 0.93977 1.91559 1.91697 1.35312 1.91343 0.87517 0.86246 0.88278 0.91429 0.94399 0.93416 0.92677 0.75847 0.83797 0.83816 0.83791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.60 18.54 42.15 0.78 -5.82 16 2 C 0.22 2.68 15.43 -20.76 -0.32 2.36 16 3 C -0.05 -0.58 6.03 -29.52 -0.18 -0.76 16 4 C 0.12 1.64 5.17 -4.04 -0.02 1.62 16 5 N -0.60 -11.56 2.46 -180.80 -0.44 -12.00 16 6 C 0.26 6.26 5.16 -5.20 -0.03 6.23 16 7 C -0.53 -14.35 9.39 -34.44 -0.32 -14.68 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 10 N -0.89 -25.71 13.29 55.43 0.74 -24.97 16 11 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 15 C 0.71 14.18 8.24 -86.92 -0.72 13.46 16 16 O -0.56 -14.11 15.90 5.29 0.08 -14.02 16 17 N -0.71 -10.88 4.81 -14.11 -0.07 -10.95 16 18 C 0.10 1.39 5.30 -83.48 -0.44 0.95 16 19 C 0.14 1.73 7.31 -39.27 -0.29 1.44 16 20 F -0.12 -1.68 17.08 2.25 0.04 -1.64 16 21 C -0.16 -1.54 10.02 -39.53 -0.40 -1.93 16 22 C -0.06 -0.49 10.04 -39.56 -0.40 -0.89 16 23 C -0.16 -1.62 10.02 -39.53 -0.40 -2.01 16 24 C 0.14 1.90 7.31 -39.27 -0.29 1.61 16 25 F -0.12 -1.89 17.08 2.25 0.04 -1.85 16 26 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.12 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.10 1.43 8.07 -51.93 -0.42 1.01 16 29 H 0.07 0.78 6.30 -51.93 -0.33 0.45 16 30 H 0.04 0.89 8.07 -51.93 -0.42 0.48 16 31 H 0.05 1.32 7.42 -51.93 -0.39 0.94 16 32 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 33 H 0.40 4.89 6.52 -40.82 -0.27 4.63 16 34 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 36 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 337.83 15.07 5.09 5.09 Total: -1.00 -34.78 337.83 -6.13 -40.90 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -3.48 Total: -0.32 kcal Atomic # 6 Polarization: 12.95 SS G_CDS: -3.89 Total: 9.06 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: 1.01 Total: -53.74 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: 0.08 Total: -14.02 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.08 Total: -3.49 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.78 -6.13 -40.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202037310.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.589 kcal (2) G-P(sol) polarization free energy of solvation -34.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds