Wall clock time and date at job start Fri Apr 10 2020 22:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33385 * 125.20197 * 2 1 4 4 C 1.38427 * 114.92221 * 180.02562 * 3 2 1 5 5 C 1.33384 * 114.91919 * 0.02562 * 4 3 2 6 6 C 1.50703 * 125.20340 * 179.97438 * 5 4 3 7 7 C 1.52991 * 109.47439 * 89.99865 * 6 5 4 8 8 C 1.52999 * 109.47089 * 180.02562 * 7 6 5 9 9 C 1.50707 * 109.47017 * 179.97438 * 8 7 6 10 10 O 1.21279 * 119.99658 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00011 * 179.97438 * 9 8 7 12 12 C 1.47584 * 134.49657 * 179.97438 * 11 9 8 13 13 C 1.53946 * 86.12025 * 155.36378 * 12 11 9 14 14 O 1.42897 * 113.74068 * 269.15867 * 13 12 11 15 15 C 1.50700 * 113.74246 * 137.95222 * 13 12 11 16 16 H 1.07998 * 119.99659 * 4.91778 * 15 13 12 17 17 C 1.37870 * 120.00275 * 184.91298 * 15 13 12 18 18 N 1.31521 * 119.99939 * 13.83955 * 17 15 13 19 19 Si 1.86793 * 120.00241 * 193.83635 * 17 15 13 20 20 H 1.48503 * 109.47305 * 180.02562 * 19 17 15 21 21 H 1.48502 * 109.47166 * 299.99995 * 19 17 15 22 22 H 1.48499 * 109.46987 * 59.99962 * 19 17 15 23 23 C 1.47585 * 134.49296 * 0.02562 * 11 9 8 24 24 S 1.75879 * 125.20356 * 180.32777 * 2 1 3 25 25 H 1.09002 * 109.47346 * 90.00073 * 1 2 3 26 26 H 1.09007 * 109.47017 * 209.99514 * 1 2 3 27 27 H 1.08997 * 109.47466 * 329.99352 * 1 2 3 28 28 H 1.08001 * 122.54109 * 0.02562 * 3 2 1 29 29 H 1.07996 * 122.53578 * 180.02562 * 4 3 2 30 30 H 1.09002 * 109.46971 * 329.99379 * 6 5 4 31 31 H 1.08999 * 109.46839 * 210.00369 * 6 5 4 32 32 H 1.09002 * 109.47436 * 59.99798 * 7 6 5 33 33 H 1.09004 * 109.47090 * 299.99874 * 7 6 5 34 34 H 1.08992 * 109.47552 * 60.00003 * 8 7 6 35 35 H 1.08994 * 109.47209 * 299.99469 * 8 7 6 36 36 H 1.09003 * 113.76727 * 41.05948 * 12 11 9 37 37 H 1.09000 * 113.86995 * 269.68290 * 12 11 9 38 38 H 0.96698 * 114.00098 * 171.44601 * 14 13 12 39 39 H 0.97007 * 119.99483 * 5.87247 * 18 17 15 40 40 H 1.08994 * 113.77423 * 90.33340 * 23 11 9 41 41 H 1.09010 * 113.76672 * 318.93187 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6379 0.8429 -0.0006 5 6 3.9750 -0.4476 -0.0016 6 6 5.3860 -0.9770 -0.0029 7 6 5.8646 -1.1570 1.4391 8 6 7.2974 -1.6938 1.4376 9 6 7.7690 -1.8704 2.8580 10 8 7.0316 -1.5946 3.7805 11 7 9.0099 -2.3359 3.1031 12 6 9.7832 -2.6253 4.3263 13 6 10.5869 -3.6113 3.4593 14 8 10.0573 -4.9385 3.4562 15 6 12.0718 -3.5718 3.7134 16 1 12.4680 -2.9511 4.5034 17 6 12.9244 -4.3279 2.9374 18 7 12.4921 -4.8651 1.8175 19 14 14.6935 -4.5895 3.4767 20 1 15.3967 -5.4318 2.4760 21 1 15.3774 -3.2758 3.5852 22 1 14.7132 -5.2684 4.7973 23 6 10.1415 -2.7601 2.2559 24 16 2.5209 -1.4371 -0.0082 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 1.8668 2.0895 0.0004 29 1 4.3719 1.6351 -0.0002 30 1 6.0384 -0.2711 -0.5169 31 1 5.4132 -1.9375 -0.5174 32 1 5.2123 -1.8629 1.9530 33 1 5.8375 -0.1963 1.9535 34 1 7.9495 -0.9876 0.9239 35 1 7.3250 -2.6543 0.9232 36 1 9.1996 -3.1056 5.1117 37 1 10.3688 -1.7802 4.6882 38 1 10.4773 -5.5281 2.8151 39 1 11.6008 -4.6603 1.4938 40 1 10.8317 -1.9536 2.0087 41 1 9.8439 -3.3483 1.3877 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186834737.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:15:52 Heat of formation + Delta-G solvation = -40.112628 kcal Electronic energy + Delta-G solvation = -22267.495891 eV Core-core repulsion = 18853.526622 eV Total energy + Delta-G solvation = -3413.969269 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 309.119 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.73219 -38.37808 -37.68706 -34.97779 -34.28419 -32.40965 -32.02031 -29.57399 -28.03270 -25.59884 -25.42998 -24.46512 -23.07052 -21.68690 -20.21707 -19.02197 -18.46573 -17.89619 -17.07022 -16.36258 -15.70853 -15.60330 -15.14409 -14.82566 -14.41896 -14.26695 -13.95644 -13.75478 -13.56183 -13.26763 -13.03702 -12.79309 -12.51214 -12.42804 -12.13352 -11.97793 -11.75582 -11.52685 -11.41684 -11.36315 -11.15550 -10.94307 -10.90634 -10.65727 -10.56964 -10.23783 -9.49408 -9.35072 -8.85352 -8.62134 -8.58272 -8.42861 -7.90667 -6.71128 -4.50339 0.82079 1.43717 1.84027 2.57137 3.11780 3.28979 3.33065 3.43588 3.51182 4.30334 4.53972 4.63953 4.73445 4.85256 4.90638 4.97566 5.14708 5.19919 5.26451 5.33213 5.37248 5.46729 5.52999 5.59008 5.65393 5.68267 5.71551 5.95899 6.04660 6.09778 6.12928 6.18294 6.30039 6.33100 6.37365 6.38715 6.50661 6.76501 7.63400 8.06867 8.34963 8.42637 8.66102 8.81927 9.19919 10.60402 Molecular weight = 309.12amu Principal moments of inertia in cm(-1) A = 0.038524 B = 0.002238 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.648706 B =12505.801799 C =12616.811631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.188 4.188 3 C -0.138 4.138 4 C -0.141 4.141 5 C -0.165 4.165 6 C -0.051 4.051 7 C -0.095 4.095 8 C -0.134 4.134 9 C 0.527 3.473 10 O -0.563 6.563 11 N -0.635 5.635 12 C 0.122 3.878 13 C 0.216 3.784 14 O -0.566 6.566 15 C -0.617 4.617 16 H 0.065 0.935 17 C 0.036 3.964 18 N -0.898 5.898 19 Si 1.067 2.933 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.284 1.284 23 C 0.070 3.930 24 S 0.096 5.904 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.136 0.864 29 H 0.138 0.862 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.375 0.625 39 H 0.268 0.732 40 H 0.087 0.913 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.275 8.852 -7.604 20.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.306 4.306 3 C -0.168 4.168 4 C -0.170 4.170 5 C -0.282 4.282 6 C -0.090 4.090 7 C -0.134 4.134 8 C -0.174 4.174 9 C 0.317 3.683 10 O -0.443 6.443 11 N -0.369 5.369 12 C 0.000 4.000 13 C 0.175 3.825 14 O -0.373 6.373 15 C -0.655 4.655 16 H 0.083 0.917 17 C -0.169 4.169 18 N -0.534 5.534 19 Si 0.893 3.107 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.053 4.053 24 S 0.360 5.640 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.154 0.846 29 H 0.156 0.844 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.224 0.776 39 H 0.080 0.920 40 H 0.105 0.895 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.152 6.969 -7.100 18.970 hybrid contribution -0.707 2.233 -0.138 2.347 sum -16.860 9.202 -7.238 20.526 Atomic orbital electron populations 1.20313 0.87991 1.03087 1.02561 1.24462 0.99885 0.95863 1.10358 1.20046 0.92956 0.99095 1.04676 1.20073 0.96211 0.95974 1.04788 1.24469 0.98632 0.96388 1.08737 1.20227 0.89270 1.01519 0.98032 1.21325 0.94555 1.02693 0.94819 1.21578 0.97670 1.03329 0.94805 1.20248 0.80663 0.76202 0.91193 1.90641 1.54677 1.52216 1.46781 1.50211 1.11690 1.63094 1.11866 1.23274 0.90599 0.96737 0.89415 1.20151 0.92193 0.80348 0.89836 1.86256 1.64590 1.22417 1.64061 1.22229 0.90090 1.32183 1.20976 0.91684 1.25986 1.05787 0.92080 0.93079 1.70952 1.20680 1.42605 1.19178 0.83582 0.74178 0.76792 0.76116 1.20559 1.21116 1.20999 1.24462 0.84768 0.98506 0.97576 1.84305 0.96712 1.09512 1.73510 0.90901 0.91373 0.90651 0.84602 0.84396 0.89785 0.90607 0.91032 0.90915 0.89226 0.89170 0.91099 0.89428 0.77635 0.92042 0.89530 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.38 36.00 0.37 -0.19 16 2 C -0.19 -1.85 6.51 -36.01 -0.23 -2.08 16 3 C -0.14 -1.35 10.05 -41.21 -0.41 -1.77 16 4 C -0.14 -1.49 10.05 -41.21 -0.41 -1.90 16 5 C -0.16 -1.85 5.76 -36.00 -0.21 -2.06 16 6 C -0.05 -0.54 5.71 -27.89 -0.16 -0.70 16 7 C -0.10 -1.27 4.49 -26.74 -0.12 -1.39 16 8 C -0.13 -1.94 5.45 -27.88 -0.15 -2.09 16 9 C 0.53 10.38 8.06 -10.98 -0.09 10.29 16 10 O -0.56 -12.79 16.71 5.56 0.09 -12.70 16 11 N -0.63 -13.12 3.61 -178.25 -0.64 -13.77 16 12 C 0.12 2.66 8.22 -2.97 -0.02 2.63 16 13 C 0.22 5.05 1.08 -90.83 -0.10 4.95 16 14 O -0.57 -13.89 13.45 -35.23 -0.47 -14.37 16 15 C -0.62 -15.51 8.56 -34.44 -0.29 -15.81 16 16 H 0.06 1.63 7.85 -52.49 -0.41 1.21 16 17 C 0.04 0.92 5.26 -17.82 -0.09 0.83 16 18 N -0.90 -23.30 12.80 55.43 0.71 -22.59 16 19 Si 1.07 22.56 29.93 -169.99 -5.09 17.47 16 20 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 21 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 23 C 0.07 1.44 7.05 -2.95 -0.02 1.42 16 24 S 0.10 1.03 23.31 -107.50 -2.51 -1.47 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 29 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 33 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 34 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 37 H 0.09 1.79 8.09 -51.93 -0.42 1.37 16 38 H 0.37 8.93 6.95 45.56 0.32 9.25 16 39 H 0.27 6.72 5.53 -40.82 -0.23 6.50 16 40 H 0.09 1.75 8.09 -51.93 -0.42 1.33 16 41 H 0.06 1.28 7.80 -51.92 -0.41 0.87 16 LS Contribution 359.53 15.07 5.42 5.42 Total: -1.00 -29.80 359.53 -9.87 -39.67 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -5.43 Total: 10.21 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -1.95 Total: -7.88 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.07 Total: -36.36 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.38 Total: -27.06 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.09 Total: 17.47 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.51 Total: -1.47 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.80 -9.87 -39.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186834737.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.442 kcal (2) G-P(sol) polarization free energy of solvation -29.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds