Wall clock time and date at job start Fri Apr 10 2020 22:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33385 * 125.20197 * 2 1 4 4 C 1.38427 * 114.92221 * 180.02562 * 3 2 1 5 5 C 1.33384 * 114.91919 * 0.02562 * 4 3 2 6 6 C 1.50703 * 125.20340 * 179.97438 * 5 4 3 7 7 C 1.52991 * 109.47439 * 89.99865 * 6 5 4 8 8 C 1.52999 * 109.47089 * 180.02562 * 7 6 5 9 9 C 1.50707 * 109.47017 * 179.97438 * 8 7 6 10 10 O 1.21279 * 119.99658 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00011 * 179.97438 * 9 8 7 12 12 C 1.47584 * 134.49657 * 179.97438 * 11 9 8 13 13 C 1.53946 * 86.12025 * 155.36378 * 12 11 9 14 14 O 1.42897 * 113.74068 * 269.15867 * 13 12 11 15 15 C 1.50700 * 113.74246 * 137.95222 * 13 12 11 16 16 H 1.07998 * 119.99659 * 4.91778 * 15 13 12 17 17 C 1.37870 * 120.00275 * 184.91298 * 15 13 12 18 18 N 1.31521 * 119.99939 * 13.83955 * 17 15 13 19 19 Si 1.86793 * 120.00241 * 193.83635 * 17 15 13 20 20 H 1.48503 * 109.47305 * 180.02562 * 19 17 15 21 21 H 1.48502 * 109.47166 * 299.99995 * 19 17 15 22 22 H 1.48499 * 109.46987 * 59.99962 * 19 17 15 23 23 C 1.47585 * 134.49296 * 0.02562 * 11 9 8 24 24 S 1.75879 * 125.20356 * 180.32777 * 2 1 3 25 25 H 1.09002 * 109.47346 * 90.00073 * 1 2 3 26 26 H 1.09007 * 109.47017 * 209.99514 * 1 2 3 27 27 H 1.08997 * 109.47466 * 329.99352 * 1 2 3 28 28 H 1.08001 * 122.54109 * 0.02562 * 3 2 1 29 29 H 1.07996 * 122.53578 * 180.02562 * 4 3 2 30 30 H 1.09002 * 109.46971 * 329.99379 * 6 5 4 31 31 H 1.08999 * 109.46839 * 210.00369 * 6 5 4 32 32 H 1.09002 * 109.47436 * 59.99798 * 7 6 5 33 33 H 1.09004 * 109.47090 * 299.99874 * 7 6 5 34 34 H 1.08992 * 109.47552 * 60.00003 * 8 7 6 35 35 H 1.08994 * 109.47209 * 299.99469 * 8 7 6 36 36 H 1.09003 * 113.76727 * 41.05948 * 12 11 9 37 37 H 1.09000 * 113.86995 * 269.68290 * 12 11 9 38 38 H 0.96698 * 114.00098 * 171.44601 * 14 13 12 39 39 H 0.97007 * 119.99483 * 5.87247 * 18 17 15 40 40 H 1.08994 * 113.77423 * 90.33340 * 23 11 9 41 41 H 1.09010 * 113.76672 * 318.93187 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6379 0.8429 -0.0006 5 6 3.9750 -0.4476 -0.0016 6 6 5.3860 -0.9770 -0.0029 7 6 5.8646 -1.1570 1.4391 8 6 7.2974 -1.6938 1.4376 9 6 7.7690 -1.8704 2.8580 10 8 7.0316 -1.5946 3.7805 11 7 9.0099 -2.3359 3.1031 12 6 9.7832 -2.6253 4.3263 13 6 10.5869 -3.6113 3.4593 14 8 10.0573 -4.9385 3.4562 15 6 12.0718 -3.5718 3.7134 16 1 12.4680 -2.9511 4.5034 17 6 12.9244 -4.3279 2.9374 18 7 12.4921 -4.8651 1.8175 19 14 14.6935 -4.5895 3.4767 20 1 15.3967 -5.4318 2.4760 21 1 15.3774 -3.2758 3.5852 22 1 14.7132 -5.2684 4.7973 23 6 10.1415 -2.7601 2.2559 24 16 2.5209 -1.4371 -0.0082 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 1.8668 2.0895 0.0004 29 1 4.3719 1.6351 -0.0002 30 1 6.0384 -0.2711 -0.5169 31 1 5.4132 -1.9375 -0.5174 32 1 5.2123 -1.8629 1.9530 33 1 5.8375 -0.1963 1.9535 34 1 7.9495 -0.9876 0.9239 35 1 7.3250 -2.6543 0.9232 36 1 9.1996 -3.1056 5.1117 37 1 10.3688 -1.7802 4.6882 38 1 10.4773 -5.5281 2.8151 39 1 11.6008 -4.6603 1.4938 40 1 10.8317 -1.9536 2.0087 41 1 9.8439 -3.3483 1.3877 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186834737.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:15:51 Heat of formation + Delta-G solvation = -57.600642 kcal Electronic energy + Delta-G solvation = -22268.254228 eV Core-core repulsion = 18853.526622 eV Total energy + Delta-G solvation = -3414.727606 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 309.119 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.39879 -39.51408 -38.98804 -36.17769 -35.92975 -34.33778 -32.88843 -30.88219 -29.30527 -27.25082 -26.94910 -25.67672 -23.92777 -22.77347 -21.85911 -20.23881 -19.85371 -19.51284 -18.13479 -17.77172 -17.10486 -17.02652 -16.57390 -16.12769 -15.88599 -15.65775 -15.30050 -14.96265 -14.55593 -14.37053 -14.14389 -14.01311 -13.88548 -13.58278 -13.48699 -13.30037 -12.96951 -12.85215 -12.63370 -12.55135 -12.41602 -12.35535 -12.26933 -11.90443 -11.78510 -11.56079 -11.17620 -11.13875 -10.72225 -10.22315 -9.64835 -9.43112 -9.35078 -8.67334 -6.47801 0.04360 0.66797 1.06705 1.56116 1.61455 1.65159 1.78085 1.86693 1.88175 2.56106 2.90927 3.31217 3.57155 3.66647 3.89998 3.93565 3.98983 4.19216 4.29060 4.35842 4.38156 4.41964 4.44054 4.55641 4.63037 4.63903 4.67333 4.71445 4.77444 4.82270 4.86770 4.98371 5.04096 5.09243 5.24982 5.30278 5.37367 5.64075 5.74682 6.09197 6.46646 6.74355 6.93134 7.06750 7.27675 8.65940 Molecular weight = 309.12amu Principal moments of inertia in cm(-1) A = 0.038524 B = 0.002238 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.648706 B =12505.801799 C =12616.811631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.188 4.188 3 C -0.150 4.150 4 C -0.144 4.144 5 C -0.184 4.184 6 C -0.043 4.043 7 C -0.086 4.086 8 C -0.124 4.124 9 C 0.519 3.481 10 O -0.598 6.598 11 N -0.637 5.637 12 C 0.118 3.882 13 C 0.197 3.803 14 O -0.578 6.578 15 C -0.632 4.632 16 H 0.060 0.940 17 C 0.000 4.000 18 N -0.914 5.914 19 Si 1.109 2.891 20 H -0.284 1.284 21 H -0.270 1.270 22 H -0.280 1.280 23 C 0.088 3.912 24 S 0.065 5.935 25 H 0.085 0.915 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.157 0.843 29 H 0.152 0.848 30 H 0.104 0.896 31 H 0.083 0.917 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.117 0.883 35 H 0.105 0.895 36 H 0.057 0.943 37 H 0.100 0.900 38 H 0.375 0.625 39 H 0.266 0.734 40 H 0.093 0.907 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.401 9.981 -8.811 21.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.305 4.305 3 C -0.180 4.180 4 C -0.173 4.173 5 C -0.301 4.301 6 C -0.082 4.082 7 C -0.125 4.125 8 C -0.163 4.163 9 C 0.311 3.689 10 O -0.481 6.481 11 N -0.370 5.370 12 C -0.005 4.005 13 C 0.156 3.844 14 O -0.385 6.385 15 C -0.670 4.670 16 H 0.078 0.922 17 C -0.202 4.202 18 N -0.551 5.551 19 Si 0.932 3.068 20 H -0.209 1.209 21 H -0.195 1.195 22 H -0.205 1.205 23 C -0.035 4.035 24 S 0.329 5.671 25 H 0.104 0.896 26 H 0.088 0.912 27 H 0.108 0.892 28 H 0.175 0.825 29 H 0.169 0.831 30 H 0.122 0.878 31 H 0.101 0.899 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.135 0.865 35 H 0.123 0.877 36 H 0.076 0.924 37 H 0.118 0.882 38 H 0.224 0.776 39 H 0.077 0.923 40 H 0.111 0.889 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.292 8.112 -8.318 20.010 hybrid contribution -0.746 1.899 0.293 2.061 sum -17.038 10.010 -8.025 21.328 Atomic orbital electron populations 1.20429 0.86081 1.03910 1.03643 1.24866 1.01186 0.95036 1.09394 1.20338 0.92793 1.00138 1.04697 1.20375 0.97032 0.96119 1.03816 1.24578 0.98742 0.96701 1.10112 1.20155 0.89370 1.02535 0.96099 1.21211 0.93481 1.01273 0.96489 1.21629 0.98529 1.04899 0.91267 1.21218 0.79684 0.74938 0.93041 1.90622 1.55343 1.53623 1.48490 1.50256 1.12177 1.63409 1.11179 1.23262 0.90773 0.96846 0.89602 1.20363 0.91802 0.80233 0.91994 1.86241 1.64724 1.23225 1.64335 1.22443 0.91198 1.32466 1.20911 0.92186 1.27062 1.08744 0.91672 0.92765 1.71015 1.20875 1.43395 1.19852 0.83008 0.70762 0.77354 0.75712 1.20892 1.19468 1.20534 1.24220 0.84536 0.97987 0.96752 1.84370 0.97706 1.10937 1.74107 0.89613 0.91154 0.89192 0.82534 0.83073 0.87817 0.89871 0.93242 0.92069 0.86537 0.87722 0.92411 0.88242 0.77647 0.92290 0.88858 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 10.38 71.24 0.74 -0.25 16 2 C -0.19 -3.43 6.51 24.59 0.16 -3.27 16 3 C -0.15 -2.69 10.05 21.22 0.21 -2.48 16 4 C -0.14 -2.81 10.05 21.22 0.21 -2.60 16 5 C -0.18 -3.93 5.76 24.59 0.14 -3.79 16 6 C -0.04 -0.83 5.71 29.85 0.17 -0.66 16 7 C -0.09 -2.20 4.49 30.59 0.14 -2.07 16 8 C -0.12 -3.36 5.45 29.85 0.16 -3.19 16 9 C 0.52 20.07 8.06 87.66 0.71 20.78 16 10 O -0.60 -27.35 16.71 -3.03 -0.05 -27.40 16 11 N -0.64 -25.84 3.61 -840.07 -3.03 -28.87 16 12 C 0.12 5.15 8.22 86.48 0.71 5.86 16 13 C 0.20 9.16 1.08 -10.87 -0.01 9.14 16 14 O -0.58 -28.48 13.45 -148.98 -2.00 -30.48 16 15 C -0.63 -31.52 8.56 25.60 0.22 -31.31 16 16 H 0.06 2.98 7.85 -2.91 -0.02 2.96 16 17 C 0.00 -0.02 5.26 84.65 0.45 0.42 16 18 N -0.91 -46.80 12.80 21.45 0.27 -46.53 16 19 Si 1.11 44.59 29.93 68.60 2.05 46.65 16 20 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 21 H -0.27 -10.09 7.11 99.48 0.71 -9.39 16 22 H -0.28 -10.95 7.11 99.48 0.71 -10.25 16 23 C 0.09 3.50 7.05 86.49 0.61 4.11 16 24 S 0.07 1.38 23.31 -56.49 -1.32 0.06 16 25 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 27 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 29 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 30 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.05 1.47 8.10 -2.39 -0.02 1.45 16 33 H 0.06 1.70 8.10 -2.39 -0.02 1.68 16 34 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 37 H 0.10 4.04 8.09 -2.39 -0.02 4.02 16 38 H 0.37 17.98 6.95 -74.06 -0.52 17.47 16 39 H 0.27 13.19 5.53 -92.70 -0.51 12.68 16 40 H 0.09 3.61 8.09 -2.39 -0.02 3.59 16 41 H 0.08 2.89 7.80 -2.38 -0.02 2.87 16 Total: -1.00 -63.17 359.53 1.32 -61.85 By element: Atomic # 1 Polarization: 33.25 SS G_CDS: 0.77 Total: 34.02 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: 4.62 Total: -9.30 kcal Atomic # 7 Polarization: -72.65 SS G_CDS: -2.76 Total: -75.40 kcal Atomic # 8 Polarization: -55.82 SS G_CDS: -2.06 Total: -57.88 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.05 Total: 46.65 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -1.32 Total: 0.06 kcal Total: -63.17 1.32 -61.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186834737.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.254 kcal (2) G-P(sol) polarization free energy of solvation -63.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds