Wall clock time and date at job start Fri Apr 10 2020 22:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.76199 * 102.99883 * 2 1 4 4 C 1.35128 * 125.52663 * 179.71729 * 3 2 1 5 5 C 1.47069 * 105.88161 * 179.97438 * 4 3 2 6 6 C 1.47383 * 127.14182 * 180.14682 * 5 4 3 7 7 O 1.21619 * 119.99516 * 131.22352 * 6 5 4 8 8 N 1.34768 * 120.00532 * 311.21811 * 6 5 4 9 9 C 1.46924 * 120.63055 * 4.29599 * 8 6 5 10 10 C 1.53195 * 108.77732 * 233.58375 * 9 8 6 11 11 C 1.53041 * 109.30917 * 305.36407 * 10 9 8 12 12 C 1.53039 * 109.54002 * 61.36592 * 11 10 9 13 13 H 1.08999 * 109.50365 * 58.61420 * 12 11 10 14 14 C 1.50702 * 109.49808 * 178.68481 * 12 11 10 15 15 H 1.07995 * 120.00213 * 359.97438 * 14 12 11 16 16 C 1.37874 * 119.99895 * 179.97438 * 14 12 11 17 17 N 1.31513 * 120.00321 * 359.97438 * 16 14 12 18 18 Si 1.86801 * 119.99978 * 179.97438 * 16 14 12 19 19 H 1.48489 * 109.47368 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.47095 * 119.99984 * 18 16 14 21 21 H 1.48495 * 109.47063 * 239.99792 * 18 16 14 22 22 C 1.46926 * 120.63327 * 184.01348 * 8 6 5 23 23 C 1.36330 * 105.70525 * 0.33900 * 5 4 3 24 24 C 1.50702 * 125.71651 * 179.81560 * 23 5 4 25 25 O 1.33949 * 108.56828 * 359.79126 * 23 5 4 26 26 H 1.09002 * 109.46766 * 300.00147 * 1 2 3 27 27 H 1.08998 * 109.46818 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47040 * 59.99588 * 1 2 3 29 29 H 1.07994 * 127.05803 * 0.03683 * 4 3 2 30 30 H 1.08999 * 109.58821 * 353.36834 * 9 8 6 31 31 H 1.08993 * 109.59167 * 113.65124 * 9 8 6 32 32 H 1.09002 * 109.49827 * 65.31074 * 10 9 8 33 33 H 1.08992 * 109.50029 * 185.41401 * 10 9 8 34 34 H 1.09002 * 109.46059 * 181.38524 * 11 10 9 35 35 H 1.09000 * 109.46388 * 301.34043 * 11 10 9 36 36 H 0.97000 * 120.00304 * 180.02562 * 17 16 14 37 37 H 1.09001 * 109.58591 * 246.20529 * 22 8 6 38 38 H 1.09001 * 109.58271 * 6.62611 * 22 8 6 39 39 H 1.09002 * 109.47029 * 179.97438 * 24 23 5 40 40 H 1.09003 * 109.46971 * 300.00041 * 24 23 5 41 41 H 1.09001 * 109.46730 * 59.99450 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.4585 2.2346 0.0054 5 6 3.2883 3.6954 0.0024 6 6 4.3523 4.7152 0.0031 7 8 4.3128 5.6356 -0.7909 8 7 5.3688 4.6280 0.8836 9 6 5.4811 3.4736 1.7854 10 6 5.5921 3.9823 3.2262 11 6 6.7548 4.9725 3.3251 12 6 6.4871 6.1693 2.4096 13 1 5.5516 6.6475 2.6998 14 6 7.6170 7.1589 2.5320 15 1 8.4435 6.9553 3.1966 16 6 7.5956 8.3243 1.7955 17 7 6.5894 8.5721 0.9858 18 14 8.9958 9.5513 1.9479 19 1 9.9982 9.0407 2.9172 20 1 9.6391 9.7354 0.6221 21 1 8.4636 10.8530 2.4248 22 6 6.3893 5.6826 0.9557 23 6 1.9420 3.9100 0.0031 24 6 1.2659 5.2569 0.0047 25 8 1.3209 2.7233 0.0016 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8899 29 1 4.3898 1.6878 0.0100 30 1 4.5957 2.8455 1.6869 31 1 6.3692 2.8956 1.5303 32 1 4.6647 4.4807 3.5085 33 1 5.7723 3.1415 3.8960 34 1 6.8515 5.3174 4.3546 35 1 7.6780 4.4804 3.0190 36 1 6.5745 9.3918 0.4673 37 1 7.3515 5.2825 0.6359 38 1 6.1034 6.5125 0.3095 39 1 0.1845 5.1205 0.0045 40 1 1.5625 5.8112 0.8951 41 1 1.5619 5.8130 -0.8849 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597899708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:14:37 Heat of formation + Delta-G solvation = -25.880901 kcal Electronic energy + Delta-G solvation = -23770.489977 eV Core-core repulsion = 20357.137842 eV Total energy + Delta-G solvation = -3413.352135 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 309.119 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.48364 -39.16103 -36.60749 -33.60412 -32.79578 -31.97077 -31.57511 -29.71423 -29.35468 -27.12247 -25.11759 -24.83852 -22.47057 -21.91762 -21.07801 -19.63499 -18.79272 -17.45585 -16.58353 -16.38688 -15.93126 -15.61851 -15.09768 -14.53042 -14.38835 -14.16190 -13.94706 -13.72160 -13.55183 -13.16717 -13.04846 -12.93367 -12.74356 -12.60135 -12.45064 -12.07765 -11.84047 -11.60695 -11.06200 -10.99754 -10.92174 -10.47733 -10.43888 -10.22833 -10.01100 -9.85710 -9.45417 -9.18864 -9.04465 -8.88655 -8.42736 -7.71746 -7.51589 -5.99384 -4.07683 0.97079 1.48730 1.63185 2.08257 3.25952 3.30228 3.39023 3.41895 3.43629 3.89089 4.43701 4.69810 4.73665 4.78570 4.89253 5.19707 5.30978 5.31869 5.37855 5.43758 5.54414 5.59718 5.61888 5.69976 5.78009 6.04331 6.06687 6.23566 6.29048 6.34933 6.62672 6.69662 6.85677 6.92366 6.99280 7.18262 7.30955 7.65079 7.87927 8.00654 8.28101 8.39619 8.88146 8.97373 9.57932 11.06135 Molecular weight = 309.12amu Principal moments of inertia in cm(-1) A = 0.026383 B = 0.003531 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.040167 B = 7927.402947 C = 8552.926214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 S -0.028 6.028 3 C -0.038 4.038 4 C -0.145 4.145 5 C -0.207 4.207 6 C 0.579 3.421 7 O -0.534 6.534 8 N -0.595 5.595 9 C 0.102 3.898 10 C -0.133 4.133 11 C -0.111 4.111 12 C 0.041 3.959 13 H 0.029 0.971 14 C -0.520 4.520 15 H 0.059 0.941 16 C 0.062 3.938 17 N -0.881 5.881 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.113 3.887 23 C 0.058 3.942 24 C -0.076 4.076 25 O -0.175 6.175 26 H 0.088 0.912 27 H 0.110 0.890 28 H 0.087 0.913 29 H 0.161 0.839 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.263 0.737 37 H 0.043 0.957 38 H 0.123 0.877 39 H 0.075 0.925 40 H 0.093 0.907 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.189 -16.398 -0.401 20.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.319 4.319 2 S 0.209 5.791 3 C -0.197 4.197 4 C -0.173 4.173 5 C -0.212 4.212 6 C 0.365 3.635 7 O -0.412 6.412 8 N -0.327 5.327 9 C -0.022 4.022 10 C -0.171 4.171 11 C -0.148 4.148 12 C 0.022 3.978 13 H 0.047 0.953 14 C -0.558 4.558 15 H 0.077 0.923 16 C -0.140 4.140 17 N -0.518 5.518 18 Si 0.720 3.280 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.007 4.007 23 C 0.002 3.998 24 C -0.132 4.132 25 O -0.074 6.074 26 H 0.107 0.893 27 H 0.129 0.871 28 H 0.106 0.894 29 H 0.178 0.822 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.140 0.860 39 H 0.094 0.906 40 H 0.111 0.889 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -11.935 -16.813 -0.946 20.640 hybrid contribution 0.152 1.575 0.118 1.587 sum -11.782 -15.237 -0.828 19.279 Atomic orbital electron populations 1.23599 0.94533 1.07114 1.06637 1.85697 1.06603 0.92953 1.93849 1.23838 0.90576 0.92194 1.13095 1.22579 0.96578 0.91893 1.06251 1.21328 0.93862 0.93484 1.12556 1.17220 0.80981 0.83979 0.81312 1.90801 1.76992 1.34465 1.38914 1.48377 1.26249 1.23033 1.34994 1.21842 1.01530 0.88448 0.90333 1.21934 1.00546 0.99348 0.95249 1.21633 0.95912 0.96860 1.00440 1.19046 0.97674 0.91380 0.89739 0.95300 1.21122 1.06436 1.02998 1.25279 0.92308 1.25053 0.95852 0.97976 0.95160 1.69894 1.30040 1.25631 1.26257 0.86540 0.82387 0.81224 0.77885 1.19804 1.20970 1.21031 1.22407 0.87011 0.88790 1.02449 1.22686 0.90527 0.85937 1.00607 1.20475 0.99939 0.87358 1.05442 1.83872 1.36708 1.13505 1.73318 0.89335 0.87149 0.89376 0.82154 0.90238 0.92127 0.92278 0.92270 0.93049 0.93176 0.92723 0.93878 0.85961 0.90608 0.88897 0.88148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.45 101.05 1.06 0.04 16 2 S -0.03 -0.27 22.74 -107.50 -2.44 -2.72 16 3 C -0.04 -0.51 7.32 29.63 0.22 -0.29 16 4 C -0.15 -2.11 8.73 -37.11 -0.32 -2.43 16 5 C -0.21 -3.57 5.27 -103.28 -0.54 -4.11 16 6 C 0.58 12.26 7.36 -12.54 -0.09 12.16 16 7 O -0.53 -13.27 16.39 5.26 0.09 -13.18 16 8 N -0.59 -12.39 2.97 -173.79 -0.52 -12.90 16 9 C 0.10 1.70 5.97 -3.71 -0.02 1.68 16 10 C -0.13 -2.22 6.08 -26.61 -0.16 -2.39 16 11 C -0.11 -2.23 5.10 -26.69 -0.14 -2.36 16 12 C 0.04 1.01 2.26 -91.43 -0.21 0.80 16 13 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 14 C -0.52 -14.07 8.56 -34.44 -0.29 -14.37 16 15 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 16 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 17 N -0.88 -25.56 11.41 55.43 0.63 -24.92 16 18 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 22 C 0.11 2.78 5.42 -3.49 -0.02 2.76 16 23 C 0.06 0.89 7.37 -34.99 -0.26 0.63 16 24 C -0.08 -0.99 10.04 36.01 0.36 -0.63 16 25 O -0.18 -2.45 10.19 6.61 0.07 -2.39 16 26 H 0.09 0.60 8.14 -51.92 -0.42 0.17 16 27 H 0.11 0.49 8.14 -51.92 -0.42 0.07 16 28 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.16 2.06 7.72 -52.49 -0.41 1.65 16 30 H 0.08 1.19 4.49 -51.93 -0.23 0.96 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.12 3.48 5.17 -51.93 -0.27 3.21 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 349.07 15.07 5.26 5.26 Total: -1.00 -31.63 349.07 -8.40 -40.03 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -5.94 Total: 1.49 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -0.52 Total: -6.90 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.12 Total: -37.83 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: 0.15 Total: -15.57 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -0.27 SS G_CDS: -2.44 Total: -2.72 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.63 -8.40 -40.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597899708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.150 kcal (2) G-P(sol) polarization free energy of solvation -31.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds