Wall clock time and date at job start Fri Apr 10 2020 22:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53006 * 109.47670 * 2 1 4 4 N 1.46502 * 109.47346 * 119.99791 * 2 1 3 5 5 C 1.46500 * 120.00345 * 300.00245 * 4 2 1 6 6 C 1.50699 * 109.47046 * 269.99617 * 5 4 2 7 7 H 1.08006 * 120.00018 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99793 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00085 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99501 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47753 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47087 * 120.00500 * 10 8 6 13 13 H 1.48512 * 109.46954 * 240.00116 * 10 8 6 14 14 C 1.34780 * 119.99734 * 119.99575 * 4 2 1 15 15 O 1.21288 * 119.99732 * 180.02562 * 14 4 2 16 16 C 1.50700 * 120.00442 * 0.02562 * 14 4 2 17 17 S 1.81391 * 109.47345 * 179.97438 * 16 14 4 18 18 C 1.76201 * 103.00285 * 179.97438 * 17 16 14 19 19 C 1.38916 * 120.02906 * 179.97438 * 18 17 16 20 20 C 1.38087 * 119.97850 * 180.02562 * 19 18 17 21 21 C 1.38718 * 120.02339 * 0.02562 * 20 19 18 22 22 O 1.35999 * 119.97469 * 179.97438 * 21 20 19 23 23 C 1.38712 * 120.04828 * 0.22589 * 21 20 19 24 24 C 1.38095 * 120.02419 * 359.49837 * 23 21 20 25 25 H 1.09001 * 109.46915 * 300.00196 * 1 2 3 26 26 H 1.09004 * 109.47292 * 59.99641 * 1 2 3 27 27 H 1.08998 * 109.47810 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47362 * 239.99995 * 2 1 3 29 29 H 1.08997 * 109.47586 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.46396 * 300.00312 * 3 2 1 31 31 H 1.08997 * 109.46732 * 59.99609 * 3 2 1 32 32 H 1.09005 * 109.46655 * 29.99734 * 5 4 2 33 33 H 1.08998 * 109.47250 * 149.99243 * 5 4 2 34 34 H 0.97000 * 119.99686 * 179.97438 * 9 8 6 35 35 H 1.09002 * 109.46832 * 59.99472 * 16 14 4 36 36 H 1.08999 * 109.47013 * 299.99998 * 16 14 4 37 37 H 1.08003 * 120.01252 * 0.02562 * 19 18 17 38 38 H 1.07997 * 119.99097 * 180.02562 * 20 19 18 39 39 H 0.96700 * 114.00494 * 89.99699 * 22 21 20 40 40 H 1.07998 * 119.98959 * 179.74654 * 23 21 20 41 41 H 1.08003 * 120.00957 * 180.25437 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6644 -0.1901 2.5268 6 6 2.7032 0.8018 2.9830 7 1 3.5428 1.0363 2.3454 8 6 2.5811 1.4107 4.2140 9 7 1.5585 1.1255 4.9902 10 14 3.8684 2.6407 4.7792 11 1 4.9093 2.7855 3.7300 12 1 3.2235 3.9564 5.0208 13 1 4.4955 2.1586 6.0361 14 6 2.7931 -1.7864 1.0725 15 8 3.1971 -2.3584 2.0628 16 6 3.1576 -2.3011 -0.2962 17 16 4.2009 -3.7756 -0.1298 18 6 4.5195 -4.2267 -1.8030 19 6 5.3054 -5.3366 -2.0862 20 6 5.5548 -5.6889 -3.3978 21 6 5.0214 -4.9346 -4.4326 22 8 5.2682 -5.2822 -5.7240 23 6 4.2408 -3.8231 -4.1510 24 6 3.9854 -3.4722 -2.8400 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3635 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 0.6904 0.2974 2.4844 33 1 1.6237 -1.0226 3.2292 34 1 1.4729 1.5537 5.8564 35 1 3.7027 -1.5302 -0.8409 36 1 2.2494 -2.5578 -0.8415 37 1 5.7211 -5.9239 -1.2807 38 1 6.1654 -6.5520 -3.6182 39 1 4.6186 -5.8931 -6.0980 40 1 3.8294 -3.2341 -4.9574 41 1 3.3742 -2.6091 -2.6211 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048601577.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:15:08 Heat of formation + Delta-G solvation = -52.739179 kcal Electronic energy + Delta-G solvation = -22759.964746 eV Core-core repulsion = 19345.447949 eV Total energy + Delta-G solvation = -3414.516797 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 309.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.77847 -39.28753 -36.86823 -36.09414 -32.93136 -31.53528 -30.97930 -30.34924 -29.71907 -26.99542 -26.69217 -23.24899 -22.86072 -22.67591 -21.42384 -18.77178 -18.47930 -17.55592 -16.84490 -16.52884 -15.98055 -15.70483 -15.32860 -15.10684 -14.65231 -14.20511 -14.14983 -13.71503 -13.56206 -13.36345 -13.20600 -12.78871 -12.47496 -12.41564 -12.05484 -11.97055 -11.77676 -11.64106 -11.24466 -10.99989 -10.89831 -10.76527 -10.66983 -10.48204 -10.14611 -10.01452 -9.64959 -9.58985 -9.28822 -9.13905 -8.45708 -7.78826 -7.33055 -6.07217 -4.10711 0.87766 1.07915 1.37154 2.40646 3.18612 3.27958 3.30274 3.36516 3.40115 3.75964 3.96673 4.42148 4.59165 4.67505 4.77541 5.01334 5.03005 5.11144 5.21710 5.27154 5.29498 5.41613 5.46133 5.54201 5.71030 5.86781 5.91928 6.04900 6.05959 6.15871 6.16593 6.28860 6.45495 6.50770 6.88012 6.99515 7.37057 7.39229 7.45682 7.88935 8.19621 8.27102 8.80069 8.96663 9.53617 11.01101 Molecular weight = 309.12amu Principal moments of inertia in cm(-1) A = 0.021602 B = 0.003138 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.852643 B = 8920.162703 C = 9397.221643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.132 3.868 3 C -0.158 4.158 4 N -0.585 5.585 5 C 0.247 3.753 6 C -0.521 4.521 7 H 0.059 0.941 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.895 3.105 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.522 3.478 15 O -0.522 6.522 16 C -0.149 4.149 17 S -0.026 6.026 18 C -0.104 4.104 19 C -0.087 4.087 20 C -0.124 4.124 21 C 0.088 3.912 22 O -0.500 6.500 23 C -0.122 4.122 24 C -0.123 4.123 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.083 0.917 32 H 0.037 0.963 33 H 0.043 0.957 34 H 0.263 0.737 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.387 0.613 40 H 0.130 0.870 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.021 -9.321 -19.862 21.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.027 3.973 3 C -0.216 4.216 4 N -0.318 5.318 5 C 0.128 3.872 6 C -0.560 4.560 7 H 0.077 0.923 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.723 3.277 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.306 3.694 15 O -0.398 6.398 16 C -0.300 4.300 17 S 0.219 5.781 18 C -0.217 4.217 19 C -0.111 4.111 20 C -0.145 4.145 21 C 0.041 3.959 22 O -0.310 6.310 23 C -0.143 4.143 24 C -0.147 4.147 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.102 0.898 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.243 0.757 40 H 0.148 0.852 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.935 -9.627 -17.912 20.427 hybrid contribution -0.187 1.159 -1.052 1.576 sum 1.748 -8.469 -18.964 20.842 Atomic orbital electron populations 1.22163 0.95290 1.01912 1.02691 1.21043 0.94363 0.94320 0.87569 1.22148 1.01433 0.95465 1.02528 1.48278 1.48636 1.25782 1.09063 1.19311 0.96067 0.95119 0.76706 1.21451 1.08920 1.23388 1.02192 0.92257 1.24922 0.95753 0.97127 0.96309 1.69935 1.29480 1.43271 1.10678 0.86484 0.81613 0.80737 0.78849 1.19791 1.21025 1.20887 1.19277 0.80070 0.81661 0.88399 1.90732 1.52830 1.57687 1.38578 1.24003 1.03376 1.00179 1.02480 1.86343 1.61254 1.31139 0.99320 1.22281 1.01413 0.99153 0.98861 1.20632 0.98083 0.95936 0.96426 1.21332 1.00913 1.00247 0.91967 1.18416 0.98393 0.95387 0.83737 1.84865 1.53989 1.68086 1.24022 1.21307 0.98467 0.97739 0.96745 1.21111 1.01425 1.00221 0.91966 0.91084 0.92122 0.92851 0.91076 0.92669 0.93122 0.89838 0.94493 0.93877 0.92779 0.87091 0.87232 0.84911 0.85039 0.75722 0.85229 0.85464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.17 37.15 0.34 -1.88 16 2 C 0.13 2.00 3.17 -67.93 -0.22 1.79 16 3 C -0.16 -2.46 8.47 37.16 0.31 -2.15 16 4 N -0.59 -11.73 2.39 -167.47 -0.40 -12.13 16 5 C 0.25 6.16 4.60 -5.19 -0.02 6.13 16 6 C -0.52 -14.14 7.83 -34.44 -0.27 -14.41 16 7 H 0.06 1.62 7.63 -52.48 -0.40 1.22 16 8 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 10 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 C 0.52 10.51 7.69 -10.98 -0.08 10.42 16 15 O -0.52 -12.89 15.44 5.55 0.09 -12.80 16 16 C -0.15 -2.16 3.13 36.01 0.11 -2.05 16 17 S -0.03 -0.39 21.06 -107.50 -2.26 -2.65 16 18 C -0.10 -1.28 6.11 -39.08 -0.24 -1.52 16 19 C -0.09 -0.95 9.79 -39.39 -0.39 -1.34 16 20 C -0.12 -1.21 9.98 -39.46 -0.39 -1.61 16 21 C 0.09 0.87 6.70 -39.23 -0.26 0.60 16 22 O -0.50 -4.22 13.50 -19.74 -0.27 -4.49 16 23 C -0.12 -1.21 9.98 -39.46 -0.39 -1.60 16 24 C -0.12 -1.34 9.36 -39.38 -0.37 -1.71 16 25 H 0.07 1.12 6.66 -51.93 -0.35 0.78 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.86 5.77 -51.93 -0.30 0.56 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.55 6.92 -51.93 -0.36 1.19 16 32 H 0.04 0.93 6.43 -51.93 -0.33 0.59 16 33 H 0.04 1.24 7.42 -51.93 -0.39 0.85 16 34 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.11 1.42 7.39 -51.92 -0.38 1.03 16 36 H 0.11 1.30 7.39 -51.92 -0.38 0.91 16 37 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 38 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.39 1.36 9.06 45.56 0.41 1.77 16 40 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.13 1.21 5.87 -52.48 -0.31 0.90 16 LS Contribution 353.55 15.07 5.33 5.33 Total: -1.00 -33.43 353.55 -8.65 -42.07 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -4.88 Total: 1.13 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -1.97 Total: -7.70 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.34 Total: -37.43 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.18 Total: -17.29 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -0.39 SS G_CDS: -2.26 Total: -2.65 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.43 -8.65 -42.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048601577.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.667 kcal (2) G-P(sol) polarization free energy of solvation -33.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds