Wall clock time and date at job start Fri Apr 10 2020 22:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42097 * 109.47362 * 2 1 4 4 C 1.81399 * 103.00093 * 116.38775 * 2 1 3 5 5 C 1.50696 * 109.47334 * 179.97438 * 4 2 1 6 6 C 1.38238 * 119.99746 * 90.00021 * 5 4 2 7 7 C 1.38235 * 120.00108 * 180.02562 * 6 5 4 8 8 C 1.38243 * 119.99617 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99586 * 179.97438 * 8 7 6 10 10 N 1.46505 * 109.47014 * 89.99954 * 9 8 7 11 11 C 1.34770 * 119.99664 * 179.97438 * 10 9 8 12 12 O 1.21281 * 120.00359 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99651 * 179.97438 * 11 10 9 14 14 C 1.53006 * 109.47096 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.47096 * 180.02562 * 14 13 11 16 16 H 1.08005 * 119.99817 * 0.02562 * 15 14 13 17 17 C 1.37870 * 119.99675 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00528 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99811 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46858 * 89.99829 * 19 17 15 21 21 H 1.48495 * 109.47295 * 209.99753 * 19 17 15 22 22 H 1.48493 * 109.47032 * 330.00332 * 19 17 15 23 23 C 1.38233 * 120.00248 * 0.25361 * 8 7 6 24 24 C 1.38234 * 120.00172 * 269.97839 * 5 4 2 25 25 H 1.09008 * 109.46829 * 303.61503 * 1 2 3 26 26 H 1.08999 * 109.47383 * 63.60995 * 1 2 3 27 27 H 1.08999 * 109.47498 * 183.61263 * 1 2 3 28 28 H 1.09004 * 109.47190 * 59.99624 * 4 2 1 29 29 H 1.08995 * 109.47023 * 299.99867 * 4 2 1 30 30 H 1.08000 * 120.00578 * 359.97438 * 6 5 4 31 31 H 1.07999 * 120.00165 * 179.97438 * 7 6 5 32 32 H 1.09000 * 109.46646 * 209.99280 * 9 8 7 33 33 H 1.09000 * 109.47248 * 329.99998 * 9 8 7 34 34 H 0.97000 * 120.00105 * 359.97438 * 10 9 8 35 35 H 1.08997 * 109.47561 * 300.00070 * 13 11 10 36 36 H 1.09000 * 109.46976 * 60.00376 * 13 11 10 37 37 H 1.08997 * 109.47040 * 300.00471 * 14 13 11 38 38 H 1.09000 * 109.46833 * 60.00371 * 14 13 11 39 39 H 0.96998 * 120.00214 * 179.97438 * 18 17 15 40 40 H 1.08004 * 119.99934 * 179.72684 * 23 8 7 41 41 H 1.07999 * 120.00024 * 0.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3397 0.0000 4 6 2.2221 -0.7856 1.5833 5 6 3.7194 -0.8616 1.7352 6 6 4.4067 0.1760 2.3369 7 6 5.7803 0.1065 2.4758 8 6 6.4667 -1.0004 2.0125 9 6 7.9643 -1.0759 2.1634 10 7 8.2949 -1.7107 3.4417 11 6 9.5840 -1.8863 3.7933 12 8 10.4704 -1.5184 3.0517 13 6 9.9241 -2.5389 5.1084 14 6 11.4445 -2.6168 5.2611 15 6 11.7846 -3.2698 6.5759 16 1 10.9952 -3.5970 7.2365 17 6 13.1034 -3.4496 6.9356 18 7 14.0646 -3.0517 6.1310 19 14 13.5250 -4.2585 8.5658 20 1 13.6353 -5.7272 8.3757 21 1 14.8186 -3.7252 9.0631 22 1 12.4562 -3.9663 9.5544 23 6 5.7801 -2.0354 1.4057 24 6 4.4057 -1.9692 1.2733 25 1 -0.3633 0.5690 0.8559 26 1 -0.3634 0.4568 -0.9205 27 1 -0.3634 -1.0256 0.0648 28 1 1.8031 -1.7915 1.6085 29 1 1.8032 -0.1970 2.3995 30 1 3.8706 1.0414 2.6977 31 1 6.3173 0.9174 2.9454 32 1 8.3825 -1.6642 1.3467 33 1 8.3831 -0.0699 2.1383 34 1 7.5860 -2.0046 4.0349 35 1 9.5063 -1.9500 5.9250 36 1 9.5048 -3.5446 5.1342 37 1 11.8619 -3.2058 4.4445 38 1 11.8642 -1.6111 5.2352 39 1 14.9924 -3.1778 6.3843 40 1 6.3169 -2.8982 1.0398 41 1 3.8687 -2.7798 0.8033 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360600621.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:14:38 Heat of formation + Delta-G solvation = -65.496879 kcal Electronic energy + Delta-G solvation = -21524.324821 eV Core-core repulsion = 18109.254809 eV Total energy + Delta-G solvation = -3415.070012 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 309.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.93227 -38.86117 -36.13696 -35.13119 -33.42203 -32.74138 -31.21458 -30.96472 -29.57128 -28.54361 -25.92720 -24.41690 -23.02302 -21.63469 -21.01906 -19.63716 -18.00027 -17.08224 -16.55035 -16.08460 -15.84950 -15.82296 -15.56330 -14.99283 -14.96401 -14.76144 -14.48158 -14.39345 -13.69793 -13.44539 -13.32062 -13.11076 -12.99899 -12.82743 -12.58639 -12.21859 -12.13890 -11.86871 -11.49623 -11.23911 -11.13356 -10.91225 -10.79615 -10.58350 -9.93180 -9.64812 -9.34922 -9.19623 -9.10493 -8.92878 -8.76416 -8.47330 -8.30035 -5.94142 -3.98515 0.61407 1.13896 1.32106 2.12136 3.27019 3.28752 3.34541 3.37176 3.40773 3.43472 3.88190 4.21089 4.37680 4.49413 4.58529 4.60173 4.69065 4.74631 4.77114 5.13249 5.19464 5.24618 5.37973 5.40690 5.48311 5.53449 5.69929 5.81857 5.90206 6.09556 6.22069 6.25487 6.27697 6.39462 6.67368 6.73591 6.92323 7.76559 7.88965 7.92089 8.09546 8.40932 8.80810 9.10208 9.64902 11.16778 Molecular weight = 309.12amu Principal moments of inertia in cm(-1) A = 0.042814 B = 0.001885 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.837910 B =14850.489514 C =15115.696940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.496 4.496 2 S 1.249 4.751 3 O -0.841 6.841 4 C -0.406 4.406 5 C -0.069 4.069 6 C -0.111 4.111 7 C -0.096 4.096 8 C -0.099 4.099 9 C 0.158 3.842 10 N -0.740 5.740 11 C 0.509 3.491 12 O -0.535 6.535 13 C -0.129 4.129 14 C 0.036 3.964 15 C -0.527 4.527 16 H 0.056 0.944 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.098 4.098 24 C -0.116 4.116 25 H 0.079 0.921 26 H 0.106 0.894 27 H 0.113 0.887 28 H 0.127 0.873 29 H 0.094 0.906 30 H 0.119 0.881 31 H 0.126 0.874 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.398 0.602 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.024 0.976 38 H 0.024 0.976 39 H 0.261 0.739 40 H 0.129 0.871 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.638 1.412 -13.947 33.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.653 4.653 2 S 1.447 4.553 3 O -0.836 6.836 4 C -0.541 4.541 5 C -0.070 4.070 6 C -0.130 4.130 7 C -0.114 4.114 8 C -0.100 4.100 9 C 0.035 3.965 10 N -0.395 5.395 11 C 0.298 3.702 12 O -0.410 6.410 13 C -0.169 4.169 14 C -0.001 4.001 15 C -0.565 4.565 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.116 4.116 24 C -0.135 4.135 25 H 0.098 0.902 26 H 0.124 0.876 27 H 0.132 0.868 28 H 0.146 0.854 29 H 0.113 0.887 30 H 0.137 0.863 31 H 0.144 0.856 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.231 0.769 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.070 0.930 40 H 0.147 0.853 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -29.193 2.080 -15.210 32.984 hybrid contribution -1.099 0.629 2.983 3.241 sum -30.293 2.709 -12.227 32.779 Atomic orbital electron populations 1.27713 1.22213 1.08067 1.07311 1.70870 0.86017 0.99377 0.99046 1.93163 1.73255 1.36450 1.80733 1.26692 0.98201 1.10901 1.18311 1.19062 0.92486 0.95383 1.00106 1.21046 0.94470 0.98201 0.99324 1.21119 0.93906 0.97822 0.98576 1.20030 0.95507 0.94974 0.99477 1.20125 0.89613 0.99212 0.87576 1.46273 1.08354 1.63962 1.20886 1.21589 0.81177 0.78086 0.89363 1.90673 1.46943 1.49628 1.53760 1.21866 1.03589 0.99819 0.91666 1.18906 0.86186 0.98192 0.96831 1.21229 0.91939 1.39591 1.03776 0.92614 1.25026 0.96568 0.95756 0.97054 1.69997 0.99574 1.46785 1.36464 0.86589 0.77799 0.79545 0.83994 1.20684 1.21233 1.19926 1.21135 0.94044 0.98210 0.98222 1.21029 0.94265 0.97499 1.00735 0.90158 0.87568 0.86849 0.85439 0.88708 0.86268 0.85581 0.90811 0.90967 0.76853 0.90278 0.90246 0.95794 0.95808 0.92964 0.85258 0.85083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -1.60 10.74 101.05 1.09 -0.52 16 2 S 1.25 6.01 13.78 -107.50 -1.48 4.53 16 3 O -0.84 -10.26 18.14 -35.23 -0.64 -10.90 16 4 C -0.41 -2.01 6.05 36.00 0.22 -1.79 16 5 C -0.07 -0.55 5.14 -104.63 -0.54 -1.08 16 6 C -0.11 -1.11 9.70 -39.58 -0.38 -1.49 16 7 C -0.10 -1.00 9.70 -39.58 -0.38 -1.38 16 8 C -0.10 -1.03 5.25 -104.62 -0.55 -1.58 16 9 C 0.16 2.02 5.80 -5.19 -0.03 1.99 16 10 N -0.74 -10.57 5.55 -61.47 -0.34 -10.91 16 11 C 0.51 9.90 7.83 -10.99 -0.09 9.82 16 12 O -0.53 -12.77 15.98 5.56 0.09 -12.68 16 13 C -0.13 -2.65 5.64 -27.88 -0.16 -2.81 16 14 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 15 C -0.53 -15.09 9.11 -34.44 -0.31 -15.40 16 16 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -27.62 13.29 55.43 0.74 -26.88 16 19 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 C -0.10 -0.84 9.70 -39.58 -0.38 -1.23 16 24 C -0.12 -0.81 9.70 -39.58 -0.38 -1.19 16 25 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 26 H 0.11 0.33 8.14 -51.92 -0.42 -0.09 16 27 H 0.11 0.05 8.14 -51.92 -0.42 -0.37 16 28 H 0.13 0.22 8.09 -51.92 -0.42 -0.20 16 29 H 0.09 0.54 8.09 -51.93 -0.42 0.12 16 30 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 31 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 32 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 33 H 0.07 0.99 8.09 -51.93 -0.42 0.57 16 34 H 0.40 4.67 8.46 -40.82 -0.35 4.32 16 35 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 38 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 39 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 40 H 0.13 0.97 8.06 -52.48 -0.42 0.54 16 41 H 0.13 0.46 8.06 -52.49 -0.42 0.03 16 LS Contribution 367.67 15.07 5.54 5.54 Total: -1.00 -40.22 367.67 -9.45 -49.67 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -6.21 Total: -0.93 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -2.12 Total: -14.22 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.40 Total: -37.79 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.55 Total: -23.57 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 6.01 SS G_CDS: -1.48 Total: 4.53 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -40.22 -9.45 -49.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360600621.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.828 kcal (2) G-P(sol) polarization free energy of solvation -40.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds