Wall clock time and date at job start Fri Apr 10 2020 22:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37778 * 119.90971 * 2 1 4 4 C 1.39693 * 119.90779 * 180.02562 * 3 2 1 5 5 C 1.47571 * 120.13914 * 179.97438 * 4 3 2 6 6 O 1.21587 * 119.99914 * 125.76594 * 5 4 3 7 7 N 1.34774 * 120.00292 * 305.75931 * 5 4 3 8 8 C 1.46927 * 120.62725 * 4.15316 * 7 5 4 9 9 C 1.53188 * 108.77933 * 233.58534 * 8 7 5 10 10 C 1.53047 * 109.31162 * 305.37013 * 9 8 7 11 11 C 1.53035 * 109.54093 * 61.35952 * 10 9 8 12 12 H 1.09010 * 109.49398 * 58.61701 * 11 10 9 13 13 C 1.50700 * 109.49930 * 178.68333 * 11 10 9 14 14 H 1.08000 * 119.99671 * 0.02562 * 13 11 10 15 15 C 1.37879 * 119.99855 * 180.02562 * 13 11 10 16 16 N 1.31514 * 120.00270 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 119.99691 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47079 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47314 * 119.99860 * 17 15 13 20 20 H 1.48504 * 109.46588 * 239.99861 * 17 15 13 21 21 C 1.46920 * 120.63331 * 183.87401 * 7 5 4 22 22 C 1.39938 * 119.71766 * 359.72228 * 4 3 2 23 23 F 1.35098 * 120.09808 * 180.27684 * 22 4 3 24 24 C 1.38158 * 119.80615 * 0.53383 * 22 4 3 25 25 C 1.38537 * 120.09109 * 359.48454 * 24 22 4 26 26 F 1.35101 * 119.85633 * 180.25755 * 25 24 22 27 27 H 1.08996 * 109.47368 * 269.98207 * 1 2 3 28 28 H 1.09001 * 109.46621 * 29.97617 * 1 2 3 29 29 H 1.08993 * 109.47356 * 149.97748 * 1 2 3 30 30 H 1.08003 * 120.04506 * 0.02562 * 3 2 1 31 31 H 1.08999 * 109.58615 * 353.37405 * 8 7 5 32 32 H 1.09007 * 109.58664 * 113.65363 * 8 7 5 33 33 H 1.08999 * 109.49849 * 65.31742 * 9 8 7 34 34 H 1.08997 * 109.50063 * 185.41731 * 9 8 7 35 35 H 1.08999 * 109.45585 * 181.38400 * 10 9 8 36 36 H 1.09000 * 109.45421 * 301.35169 * 10 9 8 37 37 H 0.97002 * 120.00167 * 180.02562 * 16 15 13 38 38 H 1.08998 * 109.58834 * 246.19849 * 21 7 5 39 39 H 1.09004 * 109.58911 * 6.63019 * 21 7 5 40 40 H 1.08001 * 119.95647 * 179.76857 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1940 1.1943 0.0000 4 6 3.5909 1.1942 -0.0005 5 6 4.3319 2.4704 -0.0011 6 8 5.1697 2.6873 0.8529 7 7 4.0801 3.3955 -0.9483 8 6 3.0088 3.1871 -1.9321 9 6 3.5925 3.3509 -3.3389 10 6 4.2865 4.7109 -3.4438 11 6 5.4341 4.7792 -2.4337 12 1 6.1407 3.9729 -2.6308 13 6 6.1371 6.1062 -2.5601 14 1 5.7992 6.8291 -3.2878 15 6 7.2117 6.3972 -1.7467 16 7 7.6229 5.5171 -0.8603 17 14 8.0827 8.0424 -1.9029 18 1 7.4307 8.8486 -2.9660 19 1 8.0029 8.7694 -0.6106 20 1 9.5071 7.8166 -2.2568 21 6 4.8676 4.6342 -1.0131 22 6 4.2846 -0.0211 0.0048 23 9 5.6355 -0.0301 0.0100 24 6 3.5839 -1.2118 -0.0006 25 6 2.1985 -1.2025 -0.0005 26 9 1.5181 -2.3696 -0.0005 27 1 -0.3634 -0.0003 1.0276 28 1 -0.3632 0.8902 -0.5135 29 1 -0.3634 -0.8897 -0.5141 30 1 1.6532 2.1292 0.0004 31 1 2.6006 2.1827 -1.8205 32 1 2.2194 3.9220 -1.7739 33 1 4.3161 2.5578 -3.5271 34 1 2.7902 3.2941 -4.0745 35 1 4.6814 4.8402 -4.4515 36 1 3.5680 5.5025 -3.2310 37 1 8.3787 5.7220 -0.2878 38 1 4.2279 5.4863 -0.7832 39 1 5.6862 4.5848 -0.2951 40 1 4.1168 -2.1512 -0.0003 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397635708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:15:25 Heat of formation + Delta-G solvation = -125.301507 kcal Electronic energy + Delta-G solvation = -25967.937541 eV Core-core repulsion = 21996.433819 eV Total energy + Delta-G solvation = -3971.503722 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.128 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.18942 -50.12904 -41.48202 -39.60632 -38.34035 -35.36378 -33.71778 -33.59985 -32.33721 -31.30078 -27.76252 -27.15962 -26.61053 -24.57125 -23.68493 -23.18940 -21.46731 -20.07262 -19.27470 -18.76377 -18.50381 -17.99623 -17.32700 -16.98795 -16.56238 -16.53808 -16.38557 -15.83311 -15.75667 -15.49995 -15.23303 -14.95607 -14.61320 -14.39976 -14.24853 -14.12440 -13.79964 -13.59421 -13.36933 -12.94752 -12.92355 -12.84239 -12.54322 -12.48226 -12.30312 -12.21321 -11.82698 -11.66270 -11.24227 -10.98345 -10.79764 -10.55384 -10.14216 -9.73362 -9.47270 -8.12491 -6.29958 -0.49000 -0.17259 1.39077 1.40954 1.49540 1.53180 1.96555 2.26299 2.41479 2.66856 3.15690 3.18008 3.30403 3.46284 3.61803 3.92690 4.03249 4.15329 4.28955 4.44539 4.49925 4.57269 4.65752 4.66141 4.72379 4.76279 4.81114 4.84535 4.86821 5.07857 5.13100 5.21582 5.23220 5.25250 5.33657 5.51425 5.58101 5.60699 5.87162 5.96767 6.30149 6.51802 6.83547 7.13420 7.40996 8.91399 Molecular weight = 309.13amu Principal moments of inertia in cm(-1) A = 0.024030 B = 0.003865 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.951027 B = 7243.254105 C = 7835.285464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.114 4.114 3 C -0.028 4.028 4 C -0.172 4.172 5 C 0.542 3.458 6 O -0.584 6.584 7 N -0.596 5.596 8 C 0.094 3.906 9 C -0.128 4.128 10 C -0.105 4.105 11 C 0.037 3.963 12 H -0.018 1.018 13 C -0.533 4.533 14 H 0.065 0.935 15 C 0.008 3.992 16 N -0.918 5.918 17 Si 0.959 3.041 18 H -0.258 1.258 19 H -0.282 1.282 20 H -0.285 1.285 21 C 0.125 3.875 22 C 0.138 3.862 23 F -0.142 7.142 24 C -0.181 4.181 25 C 0.146 3.854 26 F -0.120 7.120 27 H 0.089 0.911 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.174 0.826 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.043 0.957 34 H 0.109 0.891 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.259 0.741 38 H 0.047 0.953 39 H 0.073 0.927 40 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.342 -12.837 -1.447 23.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.115 4.115 3 C -0.046 4.046 4 C -0.177 4.177 5 C 0.330 3.670 6 O -0.465 6.465 7 N -0.327 5.327 8 C -0.027 4.027 9 C -0.166 4.166 10 C -0.142 4.142 11 C 0.017 3.983 12 H 0.000 1.000 13 C -0.572 4.572 14 H 0.084 0.916 15 C -0.191 4.191 16 N -0.557 5.557 17 Si 0.784 3.216 18 H -0.181 1.181 19 H -0.208 1.208 20 H -0.211 1.211 21 C 0.003 3.997 22 C 0.117 3.883 23 F -0.120 7.120 24 C -0.201 4.201 25 C 0.126 3.874 26 F -0.098 7.098 27 H 0.108 0.892 28 H 0.117 0.883 29 H 0.100 0.900 30 H 0.191 0.809 31 H 0.124 0.876 32 H 0.115 0.885 33 H 0.062 0.938 34 H 0.128 0.872 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -18.764 -12.767 -0.901 22.713 hybrid contribution 1.898 0.651 0.298 2.029 sum -16.865 -12.116 -0.603 20.775 Atomic orbital electron populations 1.20885 0.86257 1.05341 1.04438 1.20185 0.99394 0.89932 1.02026 1.21153 0.89377 0.99969 0.94100 1.20049 0.96104 0.91426 1.10074 1.18631 0.82416 0.84258 0.81693 1.90801 1.36371 1.79868 1.39487 1.48472 1.35199 1.19400 1.29600 1.22309 0.88967 1.03915 0.87491 1.21928 1.00694 0.97005 0.96951 1.21519 0.97146 0.96992 0.98564 1.19006 0.92978 0.95007 0.91260 1.00006 1.21557 1.14059 1.02035 1.19526 0.91646 1.25928 0.97888 1.00399 0.94874 1.70110 1.26733 1.36376 1.22491 0.85487 0.78150 0.79782 0.78143 1.18132 1.20840 1.21075 1.21875 0.93791 0.82337 1.01692 1.17550 0.76727 0.93392 1.00602 1.91543 1.29767 1.97316 1.93419 1.21032 0.93699 0.98199 1.07133 1.17270 0.88356 0.81837 0.99943 1.91544 1.79346 1.45669 1.93278 0.89230 0.88273 0.90016 0.80888 0.87552 0.88482 0.93842 0.87248 0.92967 0.91742 0.93192 0.93436 0.90871 0.81069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 9.83 71.23 0.70 -0.27 16 2 C -0.11 -1.81 5.88 -19.86 -0.12 -1.93 16 3 C -0.03 -0.56 7.06 22.51 0.16 -0.40 16 4 C -0.17 -5.36 4.89 -20.05 -0.10 -5.46 16 5 C 0.54 23.10 6.92 86.71 0.60 23.70 16 6 O -0.58 -31.71 16.28 -3.99 -0.06 -31.78 16 7 N -0.60 -23.93 2.97 -821.78 -2.44 -26.37 16 8 C 0.09 2.55 5.52 86.36 0.48 3.02 16 9 C -0.13 -3.68 6.08 30.67 0.19 -3.49 16 10 C -0.10 -3.93 5.10 30.62 0.16 -3.78 16 11 C 0.04 1.86 2.26 -11.32 -0.03 1.83 16 12 H -0.02 -1.08 8.14 -2.38 -0.02 -1.10 16 13 C -0.53 -29.36 8.56 25.60 0.22 -29.14 16 14 H 0.07 3.44 7.74 -2.91 -0.02 3.41 16 15 C 0.01 0.47 5.30 84.66 0.45 0.92 16 16 N -0.92 -56.93 11.41 21.45 0.24 -56.68 16 17 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 18 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 19 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 20 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 21 C 0.12 6.25 5.42 86.51 0.47 6.72 16 22 C 0.14 4.26 7.27 22.66 0.16 4.42 16 23 F -0.14 -5.49 16.65 44.97 0.75 -4.75 16 24 C -0.18 -4.02 9.99 22.32 0.22 -3.79 16 25 C 0.15 2.67 7.24 22.46 0.16 2.83 16 26 F -0.12 -2.01 16.46 44.97 0.74 -1.27 16 27 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.10 0.49 8.08 -2.39 -0.02 0.47 16 29 H 0.08 0.62 7.63 -2.39 -0.02 0.61 16 30 H 0.17 2.63 7.37 -2.91 -0.02 2.60 16 31 H 0.11 2.24 4.73 -2.39 -0.01 2.22 16 32 H 0.10 2.09 8.14 -2.38 -0.02 2.07 16 33 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 38 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.07 4.45 5.17 -2.39 -0.01 4.44 16 40 H 0.17 3.04 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -77.31 334.18 6.05 -71.26 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: 1.07 Total: 7.84 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: 3.73 Total: -4.82 kcal Atomic # 7 Polarization: -80.86 SS G_CDS: -2.19 Total: -83.05 kcal Atomic # 8 Polarization: -31.71 SS G_CDS: -0.06 Total: -31.78 kcal Atomic # 9 Polarization: -7.51 SS G_CDS: 1.49 Total: -6.02 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -77.31 6.05 -71.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397635708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.040 kcal (2) G-P(sol) polarization free energy of solvation -77.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds