Wall clock time and date at job start Fri Apr 10 2020 22:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.47120 * 2 1 4 4 N 1.30947 * 122.90441 * 270.00472 * 3 2 1 5 5 C 1.29429 * 117.36005 * 179.97438 * 4 3 2 6 6 S 1.70957 * 110.39420 * 359.71941 * 5 4 3 7 7 C 1.35660 * 122.90445 * 89.99517 * 3 2 1 8 8 C 1.46687 * 126.13132 * 0.02562 * 7 3 2 9 9 O 1.21685 * 119.99509 * 359.97438 * 8 7 3 10 10 N 1.34767 * 120.00424 * 179.97438 * 8 7 3 11 11 C 1.46500 * 120.00581 * 179.97438 * 10 8 7 12 12 C 1.53031 * 109.46568 * 154.99982 * 11 10 8 13 13 C 1.53189 * 109.31453 * 181.38827 * 12 11 10 14 14 N 1.46923 * 108.89141 * 305.29105 * 13 12 11 15 15 C 1.36942 * 120.62973 * 233.67281 * 14 13 12 16 16 H 1.08009 * 119.99402 * 152.59682 * 15 14 13 17 17 C 1.38805 * 120.00238 * 332.59801 * 15 14 13 18 18 N 1.31625 * 120.00214 * 159.34567 * 17 15 14 19 19 Si 1.86801 * 120.00062 * 339.34781 * 17 15 14 20 20 H 1.48499 * 109.47084 * 92.95592 * 19 17 15 21 21 H 1.48493 * 109.47117 * 212.95272 * 19 17 15 22 22 H 1.48495 * 109.46871 * 332.95714 * 19 17 15 23 23 C 1.47204 * 118.55713 * 53.54081 * 14 13 12 24 24 C 1.53041 * 109.45977 * 275.06950 * 11 10 8 25 25 H 1.08995 * 109.47216 * 299.99760 * 1 2 3 26 26 H 1.09000 * 109.47148 * 60.00479 * 1 2 3 27 27 H 1.09005 * 109.46474 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47383 * 240.00346 * 2 1 3 29 29 H 1.08997 * 109.47546 * 119.99839 * 2 1 3 30 30 H 1.08001 * 124.79953 * 179.97438 * 5 4 3 31 31 H 0.97005 * 119.99777 * 0.02562 * 10 8 7 32 32 H 1.09006 * 109.44689 * 35.02755 * 11 10 8 33 33 H 1.09002 * 109.49720 * 61.43056 * 12 11 10 34 34 H 1.09000 * 109.49696 * 301.33759 * 12 11 10 35 35 H 1.08997 * 109.58812 * 65.15319 * 13 12 11 36 36 H 1.09002 * 109.58574 * 185.43314 * 13 12 11 37 37 H 0.96996 * 120.00339 * 180.02562 * 18 17 15 38 38 H 1.08991 * 109.53869 * 186.66950 * 23 14 13 39 39 H 1.09004 * 109.67659 * 66.36251 * 23 14 13 40 40 H 1.09001 * 109.49972 * 298.56623 * 24 11 10 41 41 H 1.09007 * 109.49670 * 58.62624 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2694 2.0915 -1.0994 5 6 2.6983 3.3063 -0.9744 6 16 2.8365 3.7221 0.6781 7 6 2.2779 2.1157 1.1390 8 6 2.1033 1.6207 2.5087 9 8 1.7028 0.4877 2.6997 10 7 2.3866 2.4208 3.5556 11 6 2.2117 1.9267 4.9237 12 6 3.1332 2.7023 5.8677 13 6 2.9731 2.1596 7.2912 14 7 1.5525 2.2103 7.6627 15 6 1.1538 2.8398 8.8116 16 1 0.1629 3.2644 8.8787 17 6 2.0230 2.9323 9.8898 18 7 1.8307 3.8503 10.8134 19 14 3.4657 1.7541 10.0302 20 1 4.6672 2.3664 9.4083 21 1 3.7384 1.4739 11.4628 22 1 3.1385 0.4855 9.3312 23 6 0.5690 1.5729 6.7719 24 6 0.7562 2.1221 5.3542 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0278 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 2.9316 3.9654 -1.7975 31 1 2.7056 3.3241 3.4033 32 1 2.4623 0.8665 4.9614 33 1 2.8669 3.7591 5.8490 34 1 4.1678 2.5817 5.5466 35 1 3.3246 1.1286 7.3310 36 1 3.5536 2.7705 7.9826 37 1 2.4383 3.9151 11.5667 38 1 -0.4386 1.7980 7.1210 39 1 0.7221 0.4936 6.7688 40 1 0.5122 3.1844 5.3404 41 1 0.0989 1.5889 4.6672 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611001268.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:16:04 Heat of formation + Delta-G solvation = 27.872121 kcal Electronic energy + Delta-G solvation = -23422.136912 eV Core-core repulsion = 20043.408435 eV Total energy + Delta-G solvation = -3378.728478 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 309.125 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.67393 -39.45278 -37.60819 -34.73324 -33.58707 -32.33784 -30.77548 -30.44512 -29.46050 -26.48592 -24.96197 -23.47352 -23.02635 -22.32777 -21.23817 -20.00926 -19.22880 -18.60354 -17.22597 -16.54705 -16.20230 -15.57122 -15.39231 -14.80709 -14.49565 -14.33014 -14.19249 -14.11209 -13.83318 -13.66942 -13.13211 -12.98199 -12.63928 -12.42756 -12.14074 -12.04015 -11.83401 -11.48176 -11.11701 -10.98606 -10.86219 -10.61312 -10.34726 -10.28854 -10.17526 -9.93051 -9.86245 -9.73852 -9.49846 -9.21133 -8.90765 -8.66368 -7.02790 -5.97629 -3.33785 -0.04593 0.87483 1.24705 2.19529 3.02952 3.05623 3.28857 3.47259 3.50236 3.81628 4.50191 4.59017 4.68138 4.80460 4.91350 5.12390 5.22240 5.27336 5.28846 5.30877 5.35247 5.60207 5.76663 5.76982 5.83413 5.97074 5.98909 6.06712 6.11335 6.18848 6.26730 6.34079 6.53780 6.58763 6.61027 6.64679 6.87064 7.25287 7.43499 7.92390 8.07675 8.30015 8.90307 9.68741 10.06288 11.18303 Molecular weight = 309.13amu Principal moments of inertia in cm(-1) A = 0.026470 B = 0.003296 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.551956 B = 8493.411065 C = 8926.262182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.061 4.061 3 C 0.145 3.855 4 N -0.473 5.473 5 C 0.033 3.967 6 S 0.159 5.841 7 C -0.288 4.288 8 C 0.594 3.406 9 O -0.519 6.519 10 N -0.717 5.717 11 C 0.152 3.848 12 C -0.141 4.141 13 C 0.130 3.870 14 N -0.606 5.606 15 C -0.260 4.260 16 H 0.086 0.914 17 C 0.023 3.977 18 N -0.908 5.908 19 Si 0.881 3.119 20 H -0.288 1.288 21 H -0.303 1.303 22 H -0.270 1.270 23 C 0.151 3.849 24 C -0.141 4.141 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.106 0.894 30 H 0.205 0.795 31 H 0.394 0.606 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.028 0.972 36 H 0.077 0.923 37 H 0.263 0.737 38 H 0.066 0.934 39 H 0.027 0.973 40 H 0.063 0.937 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.734 -0.871 -23.763 23.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.100 4.100 3 C 0.007 3.993 4 N -0.186 5.186 5 C -0.262 4.262 6 S 0.414 5.586 7 C -0.412 4.412 8 C 0.378 3.622 9 O -0.397 6.397 10 N -0.367 5.367 11 C 0.049 3.951 12 C -0.181 4.181 13 C 0.003 3.997 14 N -0.330 5.330 15 C -0.388 4.388 16 H 0.104 0.896 17 C -0.176 4.176 18 N -0.551 5.551 19 Si 0.712 3.288 20 H -0.216 1.216 21 H -0.231 1.231 22 H -0.194 1.194 23 C 0.024 3.976 24 C -0.182 4.182 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.124 0.876 30 H 0.222 0.778 31 H 0.228 0.772 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.046 0.954 36 H 0.095 0.905 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.045 0.955 40 H 0.082 0.918 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.733 -0.848 -23.447 23.621 hybrid contribution 0.852 -0.656 -0.096 1.079 sum 3.585 -1.504 -23.544 23.862 Atomic orbital electron populations 1.21596 0.93752 1.02253 1.01815 1.20441 0.96822 0.88226 1.04551 1.20764 0.95274 0.98338 0.84906 1.66119 1.15019 1.06168 1.31332 1.28713 1.01133 0.96022 1.00365 1.84004 1.59067 1.12018 1.03494 1.25647 1.17498 0.98629 0.99451 1.16673 0.77909 0.85303 0.82277 1.90795 1.45969 1.18151 1.84778 1.46221 1.67347 1.16538 1.06594 1.21074 0.96479 0.99374 0.78202 1.22364 0.97826 1.00729 0.97217 1.21304 0.87258 0.98258 0.92867 1.44464 1.00766 1.63999 1.23766 1.18924 1.02123 1.28678 0.89060 0.89618 1.25281 0.98327 0.98112 0.95845 1.69835 1.39039 1.32514 1.13717 0.86973 0.82620 0.83334 0.75910 1.21629 1.23080 1.19449 1.20937 0.94003 0.94669 0.87968 1.22390 0.95052 1.01871 0.98840 0.92277 0.93019 0.91746 0.90439 0.87561 0.77801 0.77180 0.89497 0.91064 0.92149 0.95404 0.90458 0.92734 0.91525 0.95540 0.91779 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.89 37.16 0.37 -1.07 16 2 C -0.06 -0.69 5.75 -27.88 -0.16 -0.85 16 3 C 0.14 1.72 6.04 -83.89 -0.51 1.22 16 4 N -0.47 -5.15 10.50 -11.53 -0.12 -5.27 16 5 C 0.03 0.26 12.22 51.75 0.63 0.89 16 6 S 0.16 1.30 22.35 -107.50 -2.40 -1.11 16 7 C -0.29 -3.40 6.48 -37.09 -0.24 -3.64 16 8 C 0.59 8.28 7.74 -12.85 -0.10 8.18 16 9 O -0.52 -8.52 13.93 5.20 0.07 -8.45 16 10 N -0.72 -9.45 5.07 -55.08 -0.28 -9.73 16 11 C 0.15 2.38 2.42 -67.89 -0.16 2.22 16 12 C -0.14 -2.33 5.55 -26.62 -0.15 -2.48 16 13 C 0.13 2.72 4.20 -3.71 -0.02 2.71 16 14 N -0.61 -14.10 2.78 -172.10 -0.48 -14.58 16 15 C -0.26 -7.14 10.05 -15.06 -0.15 -7.29 16 16 H 0.09 2.52 8.06 -52.48 -0.42 2.09 16 17 C 0.02 0.66 5.23 -17.43 -0.09 0.57 16 18 N -0.91 -27.51 13.97 55.49 0.78 -26.73 16 19 Si 0.88 22.03 24.35 -169.99 -4.14 17.89 16 20 H -0.29 -6.89 6.62 56.52 0.37 -6.51 16 21 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 22 H -0.27 -6.65 6.63 56.52 0.38 -6.28 16 23 C 0.15 2.96 6.53 -3.56 -0.02 2.94 16 24 C -0.14 -2.36 5.65 -26.61 -0.15 -2.51 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.11 1.35 6.01 -51.93 -0.31 1.04 16 30 H 0.21 0.78 8.06 -52.49 -0.42 0.36 16 31 H 0.39 4.34 7.79 -40.82 -0.32 4.02 16 32 H 0.09 1.48 7.58 -51.93 -0.39 1.09 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.03 0.59 7.08 -51.93 -0.37 0.22 16 36 H 0.08 1.78 4.49 -51.93 -0.23 1.54 16 37 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 38 H 0.07 1.31 7.94 -51.93 -0.41 0.89 16 39 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 LS Contribution 339.65 15.07 5.12 5.12 Total: -1.00 -32.12 339.65 -8.08 -40.20 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -5.88 Total: 1.79 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -0.75 Total: 0.87 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: -0.10 Total: -56.31 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.07 Total: -8.45 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.14 Total: 17.89 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -2.40 Total: -1.11 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.12 -8.08 -40.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611001268.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.068 kcal (2) G-P(sol) polarization free energy of solvation -32.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds