Wall clock time and date at job start Fri Apr 10 2020 22:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35895 * 117.00358 * 2 1 4 4 C 1.38737 * 120.04818 * 359.97438 * 3 2 1 5 5 C 1.38232 * 119.93099 * 180.02562 * 4 3 2 6 6 Cl 1.73608 * 119.98424 * 180.02562 * 5 4 3 7 7 C 1.38409 * 120.03295 * 359.97438 * 5 4 3 8 8 C 1.38228 * 120.09470 * 0.28254 * 7 5 4 9 9 C 1.38173 * 120.06780 * 359.44089 * 8 7 5 10 10 C 1.50695 * 120.01507 * 180.27978 * 9 8 7 11 11 N 1.46899 * 109.47191 * 260.28178 * 10 9 8 12 12 C 1.46849 * 111.00203 * 45.78256 * 11 10 9 13 13 C 1.53040 * 109.52061 * 185.84038 * 12 11 10 14 14 C 1.53112 * 109.28329 * 300.82469 * 13 12 11 15 15 C 1.53114 * 109.16042 * 57.65352 * 14 13 12 16 16 H 1.09004 * 109.50561 * 62.28550 * 15 14 13 17 17 C 1.50707 * 109.50630 * 182.40689 * 15 14 13 18 18 H 1.07995 * 119.99928 * 119.80198 * 17 15 14 19 19 C 1.37877 * 119.99621 * 299.80787 * 17 15 14 20 20 N 1.31508 * 120.00152 * 179.97438 * 19 17 15 21 21 Si 1.86801 * 119.99983 * 359.97438 * 19 17 15 22 22 H 1.48505 * 109.47028 * 90.00442 * 21 19 17 23 23 H 1.48507 * 109.47191 * 209.99927 * 21 19 17 24 24 H 1.48494 * 109.47440 * 330.00522 * 21 19 17 25 25 C 1.46847 * 111.00116 * 169.99944 * 11 10 9 26 26 H 1.08996 * 109.47146 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46919 * 300.00416 * 1 2 3 28 28 H 1.09005 * 109.46668 * 60.00512 * 1 2 3 29 29 H 1.08004 * 120.03100 * 0.04190 * 4 3 2 30 30 H 1.08002 * 119.94941 * 179.97438 * 7 5 4 31 31 H 1.07998 * 119.95740 * 179.72333 * 8 7 5 32 32 H 1.09007 * 109.46854 * 20.27532 * 10 9 8 33 33 H 1.08998 * 109.47256 * 140.27873 * 10 9 8 34 34 H 1.08997 * 109.46189 * 305.86113 * 12 11 10 35 35 H 1.09000 * 109.45671 * 65.83039 * 12 11 10 36 36 H 1.09003 * 109.49964 * 180.88270 * 13 12 11 37 37 H 1.09001 * 109.50055 * 60.76749 * 13 12 11 38 38 H 1.09004 * 109.52149 * 297.75338 * 14 13 12 39 39 H 1.08997 * 109.57831 * 177.59541 * 14 13 12 40 40 H 0.97000 * 120.00891 * 179.97438 * 20 19 17 41 41 H 1.08993 * 109.46031 * 294.17187 * 25 11 10 42 42 H 1.08999 * 109.46453 * 54.14244 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3750 -0.0005 5 6 1.9216 3.6054 -0.0011 6 17 0.9787 5.0631 -0.0011 7 6 3.3039 3.6757 -0.0005 8 6 4.0569 2.5165 -0.0054 9 6 3.4313 1.2845 0.0009 10 6 4.2534 0.0216 0.0020 11 7 4.3196 -0.5208 -1.3616 12 6 4.6164 0.5377 -2.3352 13 6 4.5340 -0.0334 -3.7526 14 6 5.5387 -1.1800 -3.8949 15 6 5.2374 -2.2463 -2.8382 16 1 4.2412 -2.6551 -3.0074 17 6 6.2582 -3.3510 -2.9328 18 1 6.8885 -3.5777 -2.0857 19 6 6.3873 -4.0721 -4.1009 20 7 7.2784 -5.0357 -4.1836 21 14 5.2966 -3.6802 -5.5658 22 1 5.9581 -2.6579 -6.4160 23 1 5.0722 -4.9147 -6.3603 24 1 3.9926 -3.1564 -5.0861 25 6 5.2995 -1.6111 -1.4473 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 0.2128 2.3201 -0.0003 30 1 3.7949 4.6377 -0.0014 31 1 5.1353 2.5740 -0.0095 32 1 5.2608 0.2442 0.3538 33 1 3.7916 -0.7120 0.6628 34 1 3.8921 1.3449 -2.2261 35 1 5.6200 0.9239 -2.1570 36 1 4.7696 0.7487 -4.4743 37 1 3.5267 -0.4074 -3.9362 38 1 6.5495 -0.7986 -3.7496 39 1 5.4542 -1.6183 -4.8893 40 1 7.3691 -5.5433 -5.0052 41 1 6.2998 -1.2148 -1.2733 42 1 5.0713 -2.3646 -0.6934 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595623595.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:16:33 Heat of formation + Delta-G solvation = -34.137082 kcal Electronic energy + Delta-G solvation = -23754.144369 eV Core-core repulsion = 20338.390513 eV Total energy + Delta-G solvation = -3415.753856 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 309.124 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.46526 -39.80453 -38.57048 -37.38573 -35.73545 -34.13410 -32.11583 -31.78270 -31.21184 -28.26687 -27.20300 -26.81633 -24.07849 -23.34351 -23.13981 -21.89759 -20.45086 -19.09801 -18.78447 -17.51999 -17.30777 -16.82603 -16.60556 -16.05801 -15.97790 -15.42384 -15.25372 -15.17953 -14.83694 -14.70994 -14.45041 -14.24982 -13.85156 -13.67748 -13.30895 -12.94525 -12.91079 -12.77477 -12.64478 -12.42167 -12.33015 -11.95357 -11.89005 -11.88885 -11.72189 -11.67973 -11.40868 -10.99173 -10.79156 -10.60025 -9.84427 -9.23648 -9.01084 -8.29190 -6.32137 0.05103 0.34687 1.07433 1.30294 1.36804 1.48121 2.33827 2.39781 2.52071 3.06822 3.20686 3.69826 3.75931 4.03702 4.06803 4.08205 4.14571 4.29604 4.34433 4.40922 4.43592 4.50039 4.55198 4.63768 4.68042 4.74240 4.77997 4.83114 4.89820 4.96456 5.06968 5.08474 5.15929 5.21660 5.24629 5.40705 5.46722 5.63835 5.65277 5.75050 6.19475 6.29392 6.38395 6.43427 6.75343 7.33552 8.87695 Molecular weight = 309.12amu Principal moments of inertia in cm(-1) A = 0.023576 B = 0.003437 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.359643 B = 8145.336842 C = 8301.353687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.318 6.318 3 C 0.151 3.849 4 C -0.207 4.207 5 C -0.002 4.002 6 Cl -0.065 7.065 7 C -0.148 4.148 8 C -0.062 4.062 9 C -0.121 4.121 10 C 0.106 3.894 11 N -0.537 5.537 12 C 0.066 3.934 13 C -0.114 4.114 14 C -0.120 4.120 15 C 0.022 3.978 16 H 0.022 0.978 17 C -0.517 4.517 18 H 0.034 0.966 19 C 0.014 3.986 20 N -0.951 5.951 21 Si 0.950 3.050 22 H -0.267 1.267 23 H -0.300 1.300 24 H -0.251 1.251 25 C 0.090 3.910 26 H 0.111 0.889 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.151 0.849 30 H 0.153 0.847 31 H 0.152 0.848 32 H 0.048 0.952 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.033 0.967 36 H 0.080 0.920 37 H 0.057 0.943 38 H 0.051 0.949 39 H 0.033 0.967 40 H 0.265 0.735 41 H 0.021 0.979 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.496 21.056 9.248 27.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.230 6.230 3 C 0.104 3.896 4 C -0.227 4.227 5 C -0.029 4.029 6 Cl -0.036 7.036 7 C -0.167 4.167 8 C -0.080 4.080 9 C -0.122 4.122 10 C -0.021 4.021 11 N -0.262 5.262 12 C -0.061 4.061 13 C -0.152 4.152 14 C -0.158 4.158 15 C 0.003 3.997 16 H 0.040 0.960 17 C -0.555 4.555 18 H 0.053 0.947 19 C -0.183 4.183 20 N -0.591 5.591 21 Si 0.778 3.222 22 H -0.193 1.193 23 H -0.227 1.227 24 H -0.175 1.175 25 C -0.037 4.037 26 H 0.129 0.871 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.169 0.831 30 H 0.171 0.829 31 H 0.170 0.830 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.052 0.948 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.051 0.949 40 H 0.074 0.926 41 H 0.039 0.961 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.898 20.658 9.046 27.028 hybrid contribution 0.454 -0.089 -0.552 0.721 sum -14.444 20.569 8.494 26.530 Atomic orbital electron populations 1.23333 0.76853 1.05354 1.02146 1.86230 1.22959 1.26077 1.87759 1.18776 0.91652 0.84422 0.94712 1.21187 1.01376 0.90269 1.09822 1.20751 0.92271 0.87173 1.02683 1.98373 1.72771 1.35679 1.96789 1.21120 0.91263 1.00083 1.04187 1.21076 1.00999 0.89807 0.96165 1.19313 0.91034 0.95665 1.06165 1.20833 0.97474 0.93378 0.90400 1.62031 1.49493 1.10147 1.04524 1.22040 0.99255 0.93389 0.91455 1.21620 0.99087 0.97556 0.96898 1.21901 0.98838 0.96733 0.98285 1.19048 0.95408 0.92566 0.92715 0.96031 1.21338 1.19035 1.16136 0.99030 0.94722 1.25812 0.96358 0.94460 1.01670 1.70039 1.36888 1.23596 1.28592 0.85815 0.80794 0.76411 0.79228 1.19263 1.22741 1.17486 1.21772 0.91738 0.92467 0.97769 0.87055 0.91214 0.91942 0.83107 0.82888 0.83039 0.93385 0.90479 0.89875 0.94848 0.90169 0.92460 0.93061 0.94857 0.92588 0.96095 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.32 -7.87 9.73 -92.37 -0.90 -8.77 16 3 C 0.15 3.53 6.66 22.50 0.15 3.68 16 4 C -0.21 -4.02 8.82 22.39 0.20 -3.83 16 5 C 0.00 -0.03 6.32 22.31 0.14 0.11 16 6 Cl -0.07 -1.07 28.95 -2.72 -0.08 -1.15 16 7 C -0.15 -2.53 9.83 22.31 0.22 -2.31 16 8 C -0.06 -1.17 8.61 22.25 0.19 -0.98 16 9 C -0.12 -2.84 3.71 -19.77 -0.07 -2.92 16 10 C 0.11 2.94 5.07 85.56 0.43 3.37 16 11 N -0.54 -18.09 4.80 -900.93 -4.32 -22.41 16 12 C 0.07 2.01 4.80 86.33 0.41 2.42 16 13 C -0.11 -3.83 6.09 30.65 0.19 -3.64 16 14 C -0.12 -5.09 4.74 30.67 0.15 -4.95 16 15 C 0.02 1.04 1.85 -11.49 -0.02 1.02 16 16 H 0.02 1.09 7.19 -2.39 -0.02 1.07 16 17 C -0.52 -29.96 9.14 25.60 0.23 -29.72 16 18 H 0.03 2.20 7.99 -2.91 -0.02 2.18 16 19 C 0.01 0.82 5.45 84.66 0.46 1.28 16 20 N -0.95 -60.31 13.96 21.45 0.30 -60.01 16 21 Si 0.95 46.34 24.36 68.60 1.67 48.01 16 22 H -0.27 -12.32 6.89 99.48 0.69 -11.64 16 23 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 24 H -0.25 -11.61 6.53 99.48 0.65 -10.96 16 25 C 0.09 3.67 4.65 86.33 0.40 4.07 16 26 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.07 0.84 7.66 -2.39 -0.02 0.82 16 28 H 0.06 0.88 7.66 -2.38 -0.02 0.86 16 29 H 0.15 2.37 6.30 -2.91 -0.02 2.35 16 30 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 31 H 0.15 2.35 8.04 -2.91 -0.02 2.33 16 32 H 0.05 1.24 7.94 -2.38 -0.02 1.22 16 33 H 0.08 2.24 7.85 -2.39 -0.02 2.22 16 34 H 0.08 2.26 6.02 -2.39 -0.01 2.25 16 35 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 39 H 0.03 1.48 3.37 -2.39 -0.01 1.48 16 40 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 41 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.06 2.42 8.12 -2.39 -0.02 2.41 16 Total: -1.00 -67.73 341.24 1.80 -65.94 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 0.93 Total: 9.39 kcal Atomic # 6 Polarization: -35.19 SS G_CDS: 4.19 Total: -31.00 kcal Atomic # 7 Polarization: -78.39 SS G_CDS: -4.02 Total: -82.42 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: -0.90 Total: -8.77 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 1.67 Total: 48.01 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -0.08 Total: -1.15 kcal Total: -67.73 1.80 -65.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623595.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.802 kcal (2) G-P(sol) polarization free energy of solvation -67.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds