Wall clock time and date at job start Fri Apr 10 2020 22:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35917 * 117.00213 * 2 1 4 4 C 1.38749 * 120.04384 * 0.29833 * 3 2 1 5 5 C 1.38115 * 119.95823 * 180.25486 * 4 3 2 6 6 C 1.38387 * 120.04360 * 359.44331 * 5 4 3 7 7 Cl 1.73596 * 119.95926 * 180.30162 * 6 5 4 8 8 C 1.38352 * 120.08321 * 0.28233 * 6 5 4 9 9 C 1.50699 * 119.97862 * 180.02562 * 8 6 5 10 10 N 1.46902 * 109.47086 * 284.99876 * 9 8 6 11 11 C 1.46851 * 110.99969 * 294.21190 * 10 9 8 12 12 C 1.53040 * 109.52270 * 174.15895 * 11 10 9 13 13 C 1.53120 * 109.27594 * 59.17786 * 12 11 10 14 14 C 1.53117 * 109.16274 * 302.34361 * 13 12 11 15 15 H 1.09005 * 109.49966 * 297.71516 * 14 13 12 16 16 C 1.50701 * 109.50225 * 177.59790 * 14 13 12 17 17 H 1.07997 * 120.00046 * 240.19644 * 16 14 13 18 18 C 1.37873 * 119.99812 * 60.19918 * 16 14 13 19 19 N 1.31510 * 120.00523 * 359.97438 * 18 16 14 20 20 Si 1.86808 * 119.99919 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47074 * 59.99569 * 20 18 16 22 22 H 1.48490 * 109.47158 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46898 * 299.99787 * 20 18 16 24 24 C 1.46848 * 111.00298 * 169.99646 * 10 9 8 25 25 C 1.38166 * 120.04282 * 359.97438 * 8 6 5 26 26 H 1.09003 * 109.46694 * 60.00270 * 1 2 3 27 27 H 1.08998 * 109.46679 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46945 * 300.00238 * 1 2 3 29 29 H 1.07998 * 120.01727 * 359.97438 * 4 3 2 30 30 H 1.08002 * 119.98157 * 179.72858 * 5 4 3 31 31 H 1.08998 * 109.47393 * 44.99425 * 9 8 6 32 32 H 1.08997 * 109.47670 * 165.00167 * 9 8 6 33 33 H 1.08998 * 109.45601 * 294.17497 * 11 10 9 34 34 H 1.08999 * 109.46359 * 54.14080 * 11 10 9 35 35 H 1.08999 * 109.50260 * 299.23486 * 12 11 10 36 36 H 1.09003 * 109.52971 * 179.13613 * 12 11 10 37 37 H 1.09002 * 109.51969 * 182.43507 * 13 12 11 38 38 H 1.09001 * 109.57511 * 62.28704 * 13 12 11 39 39 H 0.97005 * 120.00655 * 180.02562 * 19 18 16 40 40 H 1.08999 * 109.46567 * 305.85951 * 24 10 9 41 41 H 1.09006 * 109.45446 * 65.82736 * 24 10 9 42 42 H 1.07999 * 120.01934 * 179.97438 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2110 0.0000 4 6 1.2914 2.3752 0.0063 5 6 1.9203 3.6049 0.0009 6 6 3.3023 3.6763 0.0010 7 17 4.0905 5.2230 0.0022 8 6 4.0567 2.5165 0.0005 9 6 5.5615 2.5970 0.0011 10 7 6.0319 2.9820 -1.3362 11 6 5.7331 1.9344 -2.3209 12 6 6.1035 2.4281 -3.7213 13 6 7.5939 2.7777 -3.7563 14 6 7.8872 3.8355 -2.6889 15 1 7.3279 4.7438 -2.9133 16 6 9.3626 4.1423 -2.6767 17 1 9.9420 3.9731 -1.7811 18 6 9.9728 4.6390 -3.8089 19 7 9.2675 4.8446 -4.8996 20 14 11.8018 5.0186 -3.7940 21 1 12.5621 3.7796 -3.4909 22 1 12.2107 5.5368 -5.1242 23 1 12.0868 6.0408 -2.7551 24 6 7.4652 3.3010 -1.3184 25 6 3.4312 1.2845 0.0005 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 0.2129 2.3199 0.0107 30 1 1.3332 4.5114 0.0014 31 1 5.8853 3.3416 0.7284 32 1 5.9773 1.6251 0.2666 33 1 6.3109 1.0403 -2.0864 34 1 4.6696 1.6981 -2.2886 35 1 5.5161 3.3142 -3.9619 36 1 5.8962 1.6450 -4.4506 37 1 7.8528 3.1707 -4.7395 38 1 8.1836 1.8834 -3.5548 39 1 9.6968 5.1938 -5.6963 40 1 7.6595 4.0573 -0.5580 41 1 8.0347 2.4004 -1.0887 42 1 4.0204 0.3794 -0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595623894.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:16:40 Heat of formation + Delta-G solvation = -40.220952 kcal Electronic energy + Delta-G solvation = -23476.036955 eV Core-core repulsion = 20060.019282 eV Total energy + Delta-G solvation = -3416.017672 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 309.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.27064 -39.88302 -38.56337 -36.97777 -35.67292 -33.89116 -32.16819 -31.54601 -30.92436 -28.17345 -27.01113 -26.88349 -23.81746 -23.60729 -23.20692 -21.79121 -20.31905 -18.79559 -18.32140 -17.52008 -17.32853 -16.82443 -16.64237 -16.31595 -15.78277 -15.60701 -14.97766 -14.81638 -14.69686 -14.46484 -14.24777 -13.99480 -13.73053 -13.39913 -13.21027 -12.88151 -12.83061 -12.75786 -12.68434 -12.53276 -12.38972 -12.06738 -11.85472 -11.70561 -11.52894 -11.48212 -11.34051 -10.85796 -10.64815 -10.35496 -9.96528 -9.09918 -9.03905 -8.05443 -6.19475 0.17994 0.27068 1.41282 1.42298 1.43654 1.51128 2.32177 2.44013 2.56215 3.21371 3.23721 3.67715 3.74866 4.03947 4.17478 4.24541 4.25766 4.34385 4.43899 4.44860 4.45983 4.53984 4.64811 4.68373 4.76454 4.78836 4.91223 4.92458 4.99915 5.04659 5.11965 5.20840 5.22225 5.37228 5.41785 5.53815 5.56712 5.65690 5.99376 6.15620 6.23568 6.34203 6.39404 6.48908 6.93375 7.48102 8.99012 Molecular weight = 309.12amu Principal moments of inertia in cm(-1) A = 0.023834 B = 0.003475 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.532156 B = 8055.226908 C = 8631.434905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.331 6.331 3 C 0.126 3.874 4 C -0.192 4.192 5 C -0.075 4.075 6 C -0.066 4.066 7 Cl -0.072 7.072 8 C -0.035 4.035 9 C 0.092 3.908 10 N -0.532 5.532 11 C 0.070 3.930 12 C -0.108 4.108 13 C -0.102 4.102 14 C 0.057 3.943 15 H -0.005 1.005 16 C -0.536 4.536 17 H 0.052 0.948 18 C 0.014 3.986 19 N -0.916 5.916 20 Si 0.953 3.047 21 H -0.271 1.271 22 H -0.285 1.285 23 H -0.272 1.272 24 C 0.085 3.915 25 C -0.145 4.145 26 H 0.066 0.934 27 H 0.118 0.882 28 H 0.069 0.931 29 H 0.165 0.835 30 H 0.153 0.847 31 H 0.085 0.915 32 H 0.051 0.949 33 H 0.028 0.972 34 H 0.077 0.923 35 H 0.046 0.954 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.023 0.977 39 H 0.260 0.740 40 H 0.056 0.944 41 H 0.018 0.982 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.770 -8.289 11.181 24.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.245 6.245 3 C 0.080 3.920 4 C -0.210 4.210 5 C -0.093 4.093 6 C -0.093 4.093 7 Cl -0.043 7.043 8 C -0.036 4.036 9 C -0.035 4.035 10 N -0.256 5.256 11 C -0.057 4.057 12 C -0.146 4.146 13 C -0.140 4.140 14 C 0.038 3.962 15 H 0.013 0.987 16 C -0.574 4.574 17 H 0.070 0.930 18 C -0.185 4.185 19 N -0.555 5.555 20 Si 0.779 3.221 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.042 4.042 25 C -0.165 4.165 26 H 0.084 0.916 27 H 0.136 0.864 28 H 0.088 0.912 29 H 0.182 0.818 30 H 0.170 0.830 31 H 0.103 0.897 32 H 0.069 0.931 33 H 0.046 0.954 34 H 0.095 0.905 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.042 0.958 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.036 0.964 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -19.845 -7.865 10.864 23.952 hybrid contribution 1.540 0.043 -0.118 1.545 sum -18.305 -7.821 10.747 22.621 Atomic orbital electron populations 1.23400 0.76136 1.05735 1.02546 1.86076 1.23717 1.26299 1.88413 1.19068 0.91994 0.85114 0.95812 1.21428 1.01589 0.90605 1.07413 1.21074 0.91644 0.99286 0.97327 1.20834 0.93239 0.86622 1.08590 1.98380 1.81107 1.27880 1.96932 1.19410 0.95322 0.91260 0.97623 1.21022 0.90264 1.00549 0.91649 1.61891 1.16952 1.41609 1.05127 1.21980 1.00071 0.91715 0.91971 1.21552 0.96940 1.00014 0.96077 1.21446 0.93468 0.97203 1.01890 1.18531 0.93668 0.93332 0.90642 0.98690 1.21503 0.95212 1.43012 0.97704 0.93003 1.25709 1.02093 0.95369 0.95289 1.70035 1.37114 1.45806 1.02533 0.85695 0.80670 0.78640 0.77131 1.19635 1.21014 1.19737 1.21955 0.85522 0.97744 0.98982 1.20323 0.92229 0.97358 1.06560 0.91554 0.86372 0.91201 0.81762 0.82970 0.89713 0.93117 0.95355 0.90507 0.93539 0.91505 0.92511 0.95789 0.93134 0.92561 0.96399 0.84307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.26 16 2 O -0.33 -6.22 10.50 -92.61 -0.97 -7.19 16 3 C 0.13 2.64 6.69 22.50 0.15 2.80 16 4 C -0.19 -3.40 9.04 22.36 0.20 -3.20 16 5 C -0.07 -1.56 9.82 22.28 0.22 -1.34 16 6 C -0.07 -1.75 6.31 22.33 0.14 -1.61 16 7 Cl -0.07 -2.16 27.54 -2.72 -0.07 -2.23 16 8 C -0.03 -0.94 4.42 -19.85 -0.09 -1.03 16 9 C 0.09 2.79 4.43 85.56 0.38 3.17 16 10 N -0.53 -19.57 4.54 -900.92 -4.09 -23.67 16 11 C 0.07 2.47 5.30 86.33 0.46 2.93 16 12 C -0.11 -4.34 6.09 30.65 0.19 -4.16 16 13 C -0.10 -5.01 5.03 30.67 0.15 -4.86 16 14 C 0.06 2.98 2.26 -11.49 -0.03 2.95 16 15 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 16 C -0.54 -30.29 8.56 25.60 0.22 -30.07 16 17 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 18 C 0.01 0.80 5.31 84.65 0.45 1.25 16 19 N -0.92 -54.28 11.36 21.44 0.24 -54.04 16 20 Si 0.95 44.51 29.54 68.60 2.03 46.54 16 21 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 23 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 24 C 0.09 3.69 4.68 86.32 0.40 4.09 16 25 C -0.15 -3.49 8.89 22.36 0.20 -3.29 16 26 H 0.07 0.51 7.67 -2.39 -0.02 0.50 16 27 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 0.47 7.65 -2.39 -0.02 0.46 16 29 H 0.16 1.79 6.30 -2.91 -0.02 1.77 16 30 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 31 H 0.08 2.58 7.43 -2.39 -0.02 2.56 16 32 H 0.05 1.41 7.93 -2.39 -0.02 1.39 16 33 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.08 2.44 6.55 -2.39 -0.02 2.43 16 35 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.06 3.16 6.16 -2.39 -0.01 3.15 16 38 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.26 14.68 8.31 -92.70 -0.77 13.91 16 40 H 0.06 2.43 8.02 -2.39 -0.02 2.41 16 41 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 42 H 0.14 3.13 8.00 -2.91 -0.02 3.11 16 Total: -1.00 -65.08 348.24 2.29 -62.79 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 1.00 Total: 8.92 kcal Atomic # 6 Polarization: -35.27 SS G_CDS: 4.16 Total: -31.11 kcal Atomic # 7 Polarization: -73.86 SS G_CDS: -3.85 Total: -77.71 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: -0.97 Total: -7.19 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 17 Polarization: -2.16 SS G_CDS: -0.07 Total: -2.23 kcal Total: -65.08 2.29 -62.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623894.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.564 kcal (2) G-P(sol) polarization free energy of solvation -65.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds