Wall clock time and date at job start Fri Apr 10 2020 22:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47380 * 2 1 4 4 C 1.53004 * 109.47457 * 239.99765 * 2 1 3 5 5 C 1.53007 * 109.47100 * 120.00089 * 2 1 3 6 6 N 1.46495 * 109.47111 * 64.41548 * 5 2 1 7 7 C 1.46493 * 120.00323 * 267.53718 * 6 5 2 8 8 C 1.50698 * 109.47301 * 282.51962 * 7 6 5 9 9 H 1.08001 * 119.99979 * 0.02562 * 8 7 6 10 10 C 1.37880 * 120.00205 * 179.97438 * 8 7 6 11 11 N 1.31517 * 119.99815 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00139 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47435 * 90.00273 * 12 10 8 14 14 H 1.48506 * 109.47018 * 210.00302 * 12 10 8 15 15 H 1.48500 * 109.47033 * 330.00002 * 12 10 8 16 16 C 1.34786 * 119.99827 * 87.54294 * 6 5 2 17 17 O 1.21602 * 119.99449 * 7.04451 * 16 6 5 18 18 C 1.47449 * 119.99923 * 187.04804 * 16 6 5 19 19 C 1.39808 * 120.10931 * 326.48460 * 18 16 6 20 20 C 1.37609 * 119.93209 * 180.25346 * 19 18 16 21 21 C 1.39093 * 120.16194 * 359.45461 * 20 19 18 22 22 O 1.35712 * 119.89282 * 180.25721 * 21 20 19 23 23 C 1.38842 * 120.22043 * 0.54945 * 21 20 19 24 24 C 1.38054 * 120.06612 * 359.72456 * 23 21 20 25 25 F 1.35091 * 120.08345 * 179.97438 * 24 23 21 26 26 H 1.08997 * 109.47482 * 300.00114 * 1 2 3 27 27 H 1.08998 * 109.47348 * 60.00467 * 1 2 3 28 28 H 1.09006 * 109.47343 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47391 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46930 * 299.99811 * 3 2 1 31 31 H 1.08997 * 109.46906 * 59.99533 * 3 2 1 32 32 H 1.08998 * 109.46811 * 305.02564 * 4 2 1 33 33 H 1.08995 * 109.46878 * 65.01909 * 4 2 1 34 34 H 1.08994 * 109.47160 * 185.02705 * 4 2 1 35 35 H 1.09002 * 109.46326 * 304.41590 * 5 2 1 36 36 H 1.09001 * 109.46934 * 184.41935 * 5 2 1 37 37 H 1.08999 * 109.47070 * 42.51991 * 7 6 5 38 38 H 1.09001 * 109.47364 * 162.52151 * 7 6 5 39 39 H 0.97005 * 120.00097 * 180.02562 * 11 10 8 40 40 H 1.08001 * 120.03452 * 359.97438 * 19 18 16 41 41 H 1.08003 * 119.91434 * 179.72213 * 20 19 18 42 42 H 0.96708 * 113.99706 * 270.29391 * 22 21 20 43 43 H 1.08000 * 119.96925 * 179.75069 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 7 1.6404 -2.1297 1.1973 7 6 0.3873 -2.5593 1.8228 8 6 0.5767 -2.6520 3.3150 9 1 1.5346 -2.4143 3.7535 10 6 -0.4732 -3.0393 4.1205 11 7 -1.6398 -3.3283 3.5865 12 14 -0.2386 -3.1535 5.9701 13 1 -0.5684 -1.8462 6.5926 14 1 -1.1345 -4.2031 6.5188 15 1 1.1735 -3.5021 6.2694 16 6 2.4258 -3.0305 0.5739 17 8 3.5236 -2.7015 0.1673 18 6 1.9538 -4.4145 0.3850 19 6 1.1332 -5.0130 1.3458 20 6 0.6990 -6.3067 1.1684 21 6 1.0653 -7.0168 0.0299 22 8 0.6297 -8.2906 -0.1420 23 6 1.8800 -6.4290 -0.9284 24 6 2.3255 -5.1336 -0.7571 25 9 3.1187 -4.5614 -1.6891 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6051 -1.7197 -1.2953 33 1 1.7520 -0.1582 -2.1369 34 1 3.1263 -0.7999 -1.2053 35 1 1.6134 -0.2551 2.1374 36 1 3.1271 -0.6532 1.2897 37 1 -0.3966 -1.8354 1.6004 38 1 0.1019 -3.5358 1.4315 39 1 -2.3786 -3.6004 4.1532 40 1 0.8440 -4.4620 2.2286 41 1 0.0688 -6.7702 1.9130 42 1 1.2183 -8.9612 0.2309 43 1 2.1652 -6.9855 -1.8090 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181956127.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:17:53 Heat of formation + Delta-G solvation = -88.032976 kcal Electronic energy + Delta-G solvation = -27128.898590 eV Core-core repulsion = 23282.471257 eV Total energy + Delta-G solvation = -3846.427333 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.55063 -40.07433 -38.92410 -36.84547 -36.06368 -34.52709 -32.50687 -30.57100 -29.74763 -27.82406 -26.93117 -26.72622 -25.79201 -23.49452 -22.46083 -22.39809 -19.57643 -18.55440 -18.21222 -16.86422 -16.63199 -16.41686 -16.17414 -15.47111 -15.07615 -14.92209 -14.80563 -14.54092 -14.15341 -13.85103 -13.65204 -13.31982 -13.17334 -12.85207 -12.52672 -12.23857 -12.00434 -11.85837 -11.73988 -11.41824 -11.25703 -11.21091 -11.12249 -10.95706 -10.85528 -10.64285 -10.42513 -10.29984 -10.19759 -9.91812 -9.77596 -9.15147 -8.82165 -8.40791 -8.32307 -7.68965 -6.33554 -4.43435 1.04322 1.47719 3.13945 3.22009 3.23160 3.27659 3.76811 3.94679 4.14610 4.24675 4.68328 4.95500 5.07592 5.12338 5.21946 5.26494 5.32195 5.39542 5.59470 5.88556 5.90356 5.94935 5.99432 6.11611 6.15899 6.22385 6.25854 6.33254 6.37655 6.41859 6.51409 6.58733 6.61475 6.62894 6.69978 6.81460 6.87171 7.04922 7.15169 7.46564 7.61575 7.65731 7.88176 8.28192 8.65626 8.93516 9.25320 10.70651 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.008719 B = 0.007904 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3210.750054 B = 3541.777296 C = 6059.776274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.085 4.085 3 C -0.135 4.135 4 C -0.132 4.132 5 C 0.132 3.868 6 N -0.582 5.582 7 C 0.202 3.798 8 C -0.546 4.546 9 H 0.065 0.935 10 C 0.069 3.931 11 N -0.881 5.881 12 Si 0.895 3.105 13 H -0.278 1.278 14 H -0.283 1.283 15 H -0.271 1.271 16 C 0.559 3.441 17 O -0.556 6.556 18 C -0.178 4.178 19 C -0.042 4.042 20 C -0.168 4.168 21 C 0.149 3.851 22 O -0.496 6.496 23 C -0.210 4.210 24 C 0.162 3.838 25 F -0.124 7.124 26 H 0.055 0.945 27 H 0.044 0.956 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.048 0.952 33 H 0.041 0.959 34 H 0.063 0.937 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.043 0.957 38 H 0.064 0.936 39 H 0.269 0.731 40 H 0.203 0.797 41 H 0.138 0.862 42 H 0.392 0.608 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.317 -2.123 -5.439 6.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.086 4.086 3 C -0.193 4.193 4 C -0.189 4.189 5 C 0.009 3.991 6 N -0.311 5.311 7 C 0.083 3.917 8 C -0.584 4.584 9 H 0.084 0.916 10 C -0.136 4.136 11 N -0.517 5.517 12 Si 0.722 3.278 13 H -0.204 1.204 14 H -0.209 1.209 15 H -0.196 1.196 16 C 0.347 3.653 17 O -0.437 6.437 18 C -0.181 4.181 19 C -0.060 4.060 20 C -0.187 4.187 21 C 0.104 3.896 22 O -0.307 6.307 23 C -0.229 4.229 24 C 0.141 3.859 25 F -0.102 7.102 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.220 0.780 41 H 0.156 0.844 42 H 0.248 0.752 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.228 -1.697 -5.909 6.944 hybrid contribution 0.294 -0.328 1.072 1.159 sum 3.522 -2.025 -4.837 6.317 Atomic orbital electron populations 1.21960 0.94404 1.02624 1.00801 1.20967 0.96152 0.95139 0.96362 1.21775 1.00788 0.95338 1.01382 1.21841 1.01725 0.99568 0.95779 1.21374 0.99961 0.80911 0.96871 1.47950 1.23627 1.06857 1.52643 1.20411 0.80706 0.98051 0.92553 1.21487 0.98087 1.47429 0.91375 0.91636 1.24984 0.94804 0.94599 0.99207 1.69931 1.01754 1.43978 1.36082 0.86519 0.78445 0.78138 0.84654 1.20356 1.20896 1.19572 1.17824 0.84582 0.84436 0.78424 1.90715 1.20543 1.80249 1.52186 1.20175 1.04679 0.96542 0.96749 1.22887 0.89121 0.93505 1.00472 1.21527 1.03589 0.95739 0.97820 1.18381 0.93190 0.85484 0.92571 1.84752 1.50570 1.13649 1.81726 1.21098 1.03737 0.95124 1.02991 1.17409 0.91059 0.90821 0.86614 1.91532 1.70861 1.84608 1.63245 0.92596 0.93711 0.91636 0.92795 0.92939 0.92680 0.93273 0.93944 0.91831 0.90002 0.90991 0.93896 0.91936 0.92160 0.78040 0.84416 0.75163 0.84357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 7.58 37.15 0.28 -2.00 16 2 C -0.09 -1.38 0.85 -154.51 -0.13 -1.51 16 3 C -0.13 -1.81 8.47 37.16 0.31 -1.50 16 4 C -0.13 -2.25 7.09 37.16 0.26 -1.98 16 5 C 0.13 2.44 4.54 -4.04 -0.02 2.43 16 6 N -0.58 -12.00 2.03 -176.32 -0.36 -12.36 16 7 C 0.20 4.49 4.05 -5.20 -0.02 4.46 16 8 C -0.55 -13.05 7.54 -34.44 -0.26 -13.31 16 9 H 0.07 1.61 7.81 -52.49 -0.41 1.20 16 10 C 0.07 1.67 5.43 -17.82 -0.10 1.57 16 11 N -0.88 -22.21 13.29 55.43 0.74 -21.47 16 12 Si 0.90 19.17 29.54 -169.99 -5.02 14.15 16 13 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 14 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 15 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 16 C 0.56 11.96 5.44 -12.50 -0.07 11.89 16 17 O -0.56 -12.77 13.85 5.28 0.07 -12.69 16 18 C -0.18 -3.53 5.53 -104.90 -0.58 -4.11 16 19 C -0.04 -0.82 7.41 -39.22 -0.29 -1.11 16 20 C -0.17 -2.79 9.96 -39.49 -0.39 -3.19 16 21 C 0.15 2.23 6.71 -39.04 -0.26 1.97 16 22 O -0.50 -6.16 13.49 -18.84 -0.25 -6.41 16 23 C -0.21 -3.24 9.95 -39.43 -0.39 -3.63 16 24 C 0.16 2.95 7.24 -38.99 -0.28 2.67 16 25 F -0.12 -2.38 16.06 2.25 0.04 -2.34 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 1.19 5.85 -51.93 -0.30 0.89 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.93 6.55 -51.93 -0.34 0.59 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.06 1.16 7.19 -51.93 -0.37 0.79 16 35 H 0.08 1.51 7.98 -51.93 -0.41 1.10 16 36 H 0.07 1.36 7.41 -51.93 -0.38 0.97 16 37 H 0.04 1.00 5.80 -51.93 -0.30 0.70 16 38 H 0.06 1.43 3.86 -52.18 -0.20 1.23 16 39 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 40 H 0.20 4.35 3.71 -52.49 -0.19 4.16 16 41 H 0.14 2.12 8.06 -52.48 -0.42 1.69 16 42 H 0.39 2.76 9.06 45.56 0.41 3.17 16 43 H 0.14 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 345.83 15.07 5.21 5.21 Total: -1.00 -27.66 345.83 -6.54 -34.20 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -5.03 Total: 9.06 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -1.94 Total: -7.34 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: 0.38 Total: -33.83 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.18 Total: -19.10 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.04 Total: -2.34 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.15 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.66 -6.54 -34.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181956127.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.832 kcal (2) G-P(sol) polarization free energy of solvation -27.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds