Wall clock time and date at job start Fri Apr 10 2020 22:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47380 * 2 1 4 4 C 1.53004 * 109.47457 * 239.99765 * 2 1 3 5 5 C 1.53007 * 109.47100 * 120.00089 * 2 1 3 6 6 N 1.46495 * 109.47111 * 64.41548 * 5 2 1 7 7 C 1.46493 * 120.00323 * 267.53718 * 6 5 2 8 8 C 1.50698 * 109.47301 * 282.51962 * 7 6 5 9 9 H 1.08001 * 119.99979 * 0.02562 * 8 7 6 10 10 C 1.37880 * 120.00205 * 179.97438 * 8 7 6 11 11 N 1.31517 * 119.99815 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00139 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47435 * 90.00273 * 12 10 8 14 14 H 1.48506 * 109.47018 * 210.00302 * 12 10 8 15 15 H 1.48500 * 109.47033 * 330.00002 * 12 10 8 16 16 C 1.34786 * 119.99827 * 87.54294 * 6 5 2 17 17 O 1.21602 * 119.99449 * 7.04451 * 16 6 5 18 18 C 1.47449 * 119.99923 * 187.04804 * 16 6 5 19 19 C 1.39808 * 120.10931 * 326.48460 * 18 16 6 20 20 C 1.37609 * 119.93209 * 180.25346 * 19 18 16 21 21 C 1.39093 * 120.16194 * 359.45461 * 20 19 18 22 22 O 1.35712 * 119.89282 * 180.25721 * 21 20 19 23 23 C 1.38842 * 120.22043 * 0.54945 * 21 20 19 24 24 C 1.38054 * 120.06612 * 359.72456 * 23 21 20 25 25 F 1.35091 * 120.08345 * 179.97438 * 24 23 21 26 26 H 1.08997 * 109.47482 * 300.00114 * 1 2 3 27 27 H 1.08998 * 109.47348 * 60.00467 * 1 2 3 28 28 H 1.09006 * 109.47343 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47391 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46930 * 299.99811 * 3 2 1 31 31 H 1.08997 * 109.46906 * 59.99533 * 3 2 1 32 32 H 1.08998 * 109.46811 * 305.02564 * 4 2 1 33 33 H 1.08995 * 109.46878 * 65.01909 * 4 2 1 34 34 H 1.08994 * 109.47160 * 185.02705 * 4 2 1 35 35 H 1.09002 * 109.46326 * 304.41590 * 5 2 1 36 36 H 1.09001 * 109.46934 * 184.41935 * 5 2 1 37 37 H 1.08999 * 109.47070 * 42.51991 * 7 6 5 38 38 H 1.09001 * 109.47364 * 162.52151 * 7 6 5 39 39 H 0.97005 * 120.00097 * 180.02562 * 11 10 8 40 40 H 1.08001 * 120.03452 * 359.97438 * 19 18 16 41 41 H 1.08003 * 119.91434 * 179.72213 * 20 19 18 42 42 H 0.96708 * 113.99706 * 270.29391 * 22 21 20 43 43 H 1.08000 * 119.96925 * 179.75069 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 7 1.6404 -2.1297 1.1973 7 6 0.3873 -2.5593 1.8228 8 6 0.5767 -2.6520 3.3150 9 1 1.5346 -2.4143 3.7535 10 6 -0.4732 -3.0393 4.1205 11 7 -1.6398 -3.3283 3.5865 12 14 -0.2386 -3.1535 5.9701 13 1 -0.5684 -1.8462 6.5926 14 1 -1.1345 -4.2031 6.5188 15 1 1.1735 -3.5021 6.2694 16 6 2.4258 -3.0305 0.5739 17 8 3.5236 -2.7015 0.1673 18 6 1.9538 -4.4145 0.3850 19 6 1.1332 -5.0130 1.3458 20 6 0.6990 -6.3067 1.1684 21 6 1.0653 -7.0168 0.0299 22 8 0.6297 -8.2906 -0.1420 23 6 1.8800 -6.4290 -0.9284 24 6 2.3255 -5.1336 -0.7571 25 9 3.1187 -4.5614 -1.6891 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6051 -1.7197 -1.2953 33 1 1.7520 -0.1582 -2.1369 34 1 3.1263 -0.7999 -1.2053 35 1 1.6134 -0.2551 2.1374 36 1 3.1271 -0.6532 1.2897 37 1 -0.3966 -1.8354 1.6004 38 1 0.1019 -3.5358 1.4315 39 1 -2.3786 -3.6004 4.1532 40 1 0.8440 -4.4620 2.2286 41 1 0.0688 -6.7702 1.9130 42 1 1.2183 -8.9612 0.2309 43 1 2.1652 -6.9855 -1.8090 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181956127.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:17:52 Heat of formation + Delta-G solvation = -103.699138 kcal Electronic energy + Delta-G solvation = -27129.577925 eV Core-core repulsion = 23282.471257 eV Total energy + Delta-G solvation = -3847.106668 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.00134 -41.59585 -40.23616 -38.20846 -37.47785 -36.12303 -34.30771 -31.93674 -31.12065 -29.56394 -28.19033 -28.11154 -27.26793 -25.16239 -23.93893 -23.80973 -21.06874 -19.75862 -19.64799 -18.64767 -18.21561 -17.87228 -17.48495 -17.01654 -16.54934 -16.47544 -16.36453 -15.96742 -15.52048 -15.28293 -15.01695 -14.73447 -14.63072 -14.41069 -14.14695 -13.74631 -13.40478 -13.21371 -13.04046 -12.88562 -12.81981 -12.69858 -12.57312 -12.45344 -12.28907 -12.06965 -12.04111 -11.74006 -11.56647 -11.49929 -11.42048 -10.82998 -10.57700 -9.84986 -9.74643 -9.34938 -8.20442 -6.36063 -0.32667 0.12065 1.42410 1.46636 1.54473 1.74156 2.22210 2.40315 2.56171 2.88388 3.08079 3.37180 3.60495 3.79096 3.89045 3.92538 4.00926 4.05471 4.26128 4.53276 4.56800 4.72661 4.73797 4.77323 4.83602 4.89285 4.90618 4.94140 5.03973 5.04480 5.06253 5.18528 5.22541 5.25534 5.29561 5.33947 5.45930 5.53004 5.66240 5.70659 5.83885 6.03370 6.55693 6.77556 6.79276 7.24349 7.37861 8.83112 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.008719 B = 0.007904 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3210.750054 B = 3541.777296 C = 6059.776274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.082 4.082 3 C -0.129 4.129 4 C -0.122 4.122 5 C 0.128 3.872 6 N -0.582 5.582 7 C 0.216 3.784 8 C -0.550 4.550 9 H 0.052 0.948 10 C 0.036 3.964 11 N -0.905 5.905 12 Si 0.950 3.050 13 H -0.277 1.277 14 H -0.278 1.278 15 H -0.273 1.273 16 C 0.554 3.446 17 O -0.580 6.580 18 C -0.204 4.204 19 C -0.055 4.055 20 C -0.169 4.169 21 C 0.175 3.825 22 O -0.493 6.493 23 C -0.195 4.195 24 C 0.149 3.851 25 F -0.133 7.133 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.038 0.962 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.022 0.978 33 H 0.065 0.935 34 H 0.047 0.953 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.029 0.971 38 H 0.060 0.940 39 H 0.271 0.729 40 H 0.178 0.822 41 H 0.150 0.850 42 H 0.420 0.580 43 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.037 -3.022 -5.913 7.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.083 4.083 3 C -0.186 4.186 4 C -0.179 4.179 5 C 0.005 3.995 6 N -0.310 5.310 7 C 0.097 3.903 8 C -0.588 4.588 9 H 0.071 0.929 10 C -0.167 4.167 11 N -0.542 5.542 12 Si 0.775 3.225 13 H -0.203 1.203 14 H -0.203 1.203 15 H -0.198 1.198 16 C 0.343 3.657 17 O -0.463 6.463 18 C -0.207 4.207 19 C -0.072 4.072 20 C -0.187 4.187 21 C 0.129 3.871 22 O -0.308 6.308 23 C -0.214 4.214 24 C 0.129 3.871 25 F -0.112 7.112 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.041 0.959 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.047 0.953 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.194 0.806 41 H 0.168 0.832 42 H 0.282 0.718 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 2.956 -2.610 -6.372 7.494 hybrid contribution 0.378 -0.174 1.182 1.253 sum 3.335 -2.784 -5.190 6.768 Atomic orbital electron populations 1.21879 0.94257 1.01188 1.01818 1.20952 0.96146 0.96612 0.94545 1.21727 1.00967 0.93147 1.02789 1.21734 1.00416 0.98583 0.97216 1.21514 0.99502 0.80256 0.98204 1.47962 1.23029 1.07712 1.52312 1.20149 0.80885 0.97479 0.91828 1.21545 0.97565 1.47405 0.92315 0.92938 1.25525 0.94512 0.94257 1.02417 1.70003 1.02274 1.44713 1.37239 0.85679 0.78145 0.78050 0.80595 1.20316 1.20289 1.19756 1.18142 0.84291 0.85260 0.77972 1.90678 1.21404 1.80908 1.53344 1.20147 1.06294 0.96088 0.98210 1.22541 0.90224 0.94715 0.99767 1.21646 1.03397 0.94777 0.98888 1.18231 0.91284 0.86456 0.91144 1.84697 1.51371 1.12891 1.81851 1.21359 1.02487 0.93752 1.03824 1.17601 0.91530 0.91822 0.86180 1.91504 1.71244 1.85002 1.63410 0.92684 0.91487 0.94274 0.92531 0.91026 0.91777 0.95900 0.91622 0.93386 0.90404 0.91775 0.95328 0.92259 0.92004 0.80574 0.83230 0.71794 0.81262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.33 7.58 71.98 0.55 -3.78 16 2 C -0.08 -2.63 0.85 -52.18 -0.04 -2.67 16 3 C -0.13 -3.25 8.47 71.98 0.61 -2.64 16 4 C -0.12 -4.18 7.09 71.98 0.51 -3.67 16 5 C 0.13 4.89 4.54 86.38 0.39 5.28 16 6 N -0.58 -25.07 2.03 -830.02 -1.68 -26.75 16 7 C 0.22 10.01 4.05 85.63 0.35 10.36 16 8 C -0.55 -27.08 7.54 25.60 0.19 -26.89 16 9 H 0.05 2.67 7.81 -2.91 -0.02 2.65 16 10 C 0.04 1.74 5.43 84.65 0.46 2.20 16 11 N -0.90 -46.08 13.29 21.45 0.28 -45.79 16 12 Si 0.95 39.44 29.54 68.60 2.03 41.47 16 13 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16 14 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 15 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 16 C 0.55 24.68 5.44 86.67 0.47 25.15 16 17 O -0.58 -27.70 13.85 -4.04 -0.06 -27.76 16 18 C -0.20 -8.29 5.53 -20.05 -0.11 -8.41 16 19 C -0.05 -2.14 7.41 22.50 0.17 -1.97 16 20 C -0.17 -5.40 9.96 22.33 0.22 -5.18 16 21 C 0.17 4.75 6.71 22.62 0.15 4.90 16 22 O -0.49 -10.20 13.49 -90.33 -1.22 -11.42 16 23 C -0.20 -5.55 9.95 22.37 0.22 -5.33 16 24 C 0.15 5.41 7.24 22.65 0.16 5.57 16 25 F -0.13 -5.13 16.06 44.97 0.72 -4.40 16 26 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.04 1.46 5.85 -2.38 -0.01 1.44 16 29 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.02 0.87 6.55 -2.39 -0.02 0.86 16 33 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.05 1.78 7.19 -2.39 -0.02 1.76 16 35 H 0.08 2.98 7.98 -2.39 -0.02 2.96 16 36 H 0.06 2.52 7.41 -2.39 -0.02 2.50 16 37 H 0.03 1.40 5.80 -2.39 -0.01 1.39 16 38 H 0.06 2.84 3.86 -2.62 -0.01 2.83 16 39 H 0.27 13.10 8.31 -92.70 -0.77 12.33 16 40 H 0.18 7.89 3.71 -2.91 -0.01 7.88 16 41 H 0.15 4.37 8.06 -2.91 -0.02 4.35 16 42 H 0.42 3.95 9.06 -74.05 -0.67 3.28 16 43 H 0.17 3.75 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -60.57 345.83 4.75 -55.82 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: 0.37 Total: 25.91 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: 4.30 Total: -7.08 kcal Atomic # 7 Polarization: -71.15 SS G_CDS: -1.40 Total: -72.54 kcal Atomic # 8 Polarization: -37.90 SS G_CDS: -1.27 Total: -39.18 kcal Atomic # 9 Polarization: -5.13 SS G_CDS: 0.72 Total: -4.40 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 2.03 Total: 41.47 kcal Total: -60.57 4.75 -55.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181956127.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.878 kcal (2) G-P(sol) polarization free energy of solvation -60.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds