Wall clock time and date at job start Fri Apr 10 2020 22:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34232 * 116.99801 * 2 1 4 4 O 1.20827 * 119.99889 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99782 * 179.97438 * 3 2 1 6 6 H 1.08993 * 109.47058 * 60.00533 * 5 3 2 7 7 N 1.46903 * 109.46977 * 180.02562 * 5 3 2 8 8 C 1.46897 * 110.99886 * 275.00057 * 7 5 3 9 9 C 1.53006 * 109.46858 * 179.97438 * 8 7 5 10 10 C 1.53004 * 109.46792 * 180.02562 * 9 8 7 11 11 C 1.50705 * 109.46669 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00289 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99736 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00067 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00094 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46985 * 89.99594 * 15 13 11 17 17 H 1.48494 * 109.47290 * 209.99654 * 15 13 11 18 18 H 1.48495 * 109.46850 * 329.99871 * 15 13 11 19 19 C 1.50701 * 109.47207 * 299.99951 * 5 3 2 20 20 C 1.38263 * 119.97594 * 279.97849 * 19 5 3 21 21 C 1.38176 * 120.02823 * 180.02562 * 20 19 5 22 22 C 1.38485 * 119.97177 * 0.02562 * 21 20 19 23 23 F 1.35093 * 120.02684 * 180.25338 * 22 21 20 24 24 C 1.38445 * 119.94716 * 359.97438 * 22 21 20 25 25 C 1.50694 * 120.00973 * 179.97438 * 24 22 21 26 26 C 1.38218 * 119.97632 * 359.97438 * 24 22 21 27 27 H 1.09000 * 109.47120 * 299.99942 * 1 2 3 28 28 H 1.08994 * 109.47132 * 59.99532 * 1 2 3 29 29 H 1.08994 * 109.47072 * 179.97438 * 1 2 3 30 30 H 1.00904 * 110.99653 * 38.95633 * 7 5 3 31 31 H 1.08996 * 109.47421 * 299.99761 * 8 7 5 32 32 H 1.09001 * 109.47089 * 60.00339 * 8 7 5 33 33 H 1.09000 * 109.47220 * 299.99688 * 9 8 7 34 34 H 1.09001 * 109.46957 * 60.00303 * 9 8 7 35 35 H 1.09000 * 109.46726 * 299.99676 * 10 9 8 36 36 H 1.08988 * 109.47409 * 59.99912 * 10 9 8 37 37 H 0.97005 * 120.00332 * 180.02562 * 14 13 11 38 38 H 1.08000 * 119.98569 * 0.02562 * 20 19 5 39 39 H 1.08000 * 120.01901 * 180.02562 * 21 20 19 40 40 H 1.09003 * 109.47584 * 89.99775 * 25 24 22 41 41 H 1.09004 * 109.47177 * 209.99980 * 25 24 22 42 42 H 1.09004 * 109.47536 * 329.99440 * 25 24 22 43 43 H 1.07992 * 119.98884 * 180.02562 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9564 0.7807 -0.8891 7 7 3.9828 2.6837 0.0011 8 6 4.0179 3.2227 -1.3650 9 6 4.4544 4.6886 -1.3237 10 6 4.4903 5.2502 -2.7465 11 6 4.9208 6.6939 -2.7058 12 1 5.1457 7.1639 -1.7599 13 6 5.0264 7.4149 -3.8763 14 7 4.7519 6.8427 -5.0282 15 14 5.5592 9.2046 -3.8260 16 1 7.0382 9.2840 -3.9351 17 1 4.9393 9.9378 -4.9587 18 1 5.1241 9.8147 -2.5440 19 6 4.1047 0.5920 1.2314 20 6 4.1042 1.2545 2.4450 21 6 4.5980 0.6296 3.5741 22 6 5.0941 -0.6606 3.4897 23 9 5.5725 -1.2745 4.5939 24 6 5.0941 -1.3229 2.2740 25 6 5.6341 -2.7267 2.1804 26 6 4.5986 -0.6962 1.1461 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 3.3826 3.2379 0.5933 31 1 4.7255 2.6493 -1.9638 32 1 3.0250 3.1520 -1.8091 33 1 3.7464 5.2618 -0.7250 34 1 5.4472 4.7597 -0.8794 35 1 5.1981 4.6771 -3.3454 36 1 3.4975 5.1791 -3.1904 37 1 4.8266 7.3499 -5.8517 38 1 3.7176 2.2608 2.5105 39 1 4.5971 1.1470 4.5221 40 1 4.8288 -3.4387 2.3613 41 1 6.0479 -2.8912 1.1855 42 1 6.4164 -2.8656 2.9267 43 1 4.5981 -1.2127 0.1977 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185762335.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:17:55 Heat of formation + Delta-G solvation = -139.602759 kcal Electronic energy + Delta-G solvation = -24939.517425 eV Core-core repulsion = 21090.853859 eV Total energy + Delta-G solvation = -3848.663566 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.89937 -41.95701 -40.16944 -38.26968 -37.14871 -35.65787 -34.11124 -33.35613 -31.73033 -29.36636 -28.41704 -27.76217 -26.48114 -24.30156 -23.58132 -22.90220 -22.04538 -21.13858 -18.99330 -18.58570 -18.45678 -18.13904 -17.76258 -17.40612 -16.66528 -16.59854 -16.54044 -15.95174 -15.43024 -15.31055 -14.89491 -14.53980 -14.37234 -14.29253 -14.17802 -14.10121 -13.92842 -13.62123 -13.41104 -13.12760 -13.02393 -12.79279 -12.75785 -12.59237 -12.47608 -12.22554 -11.95687 -11.87202 -11.84722 -11.55982 -11.40633 -11.13578 -10.54913 -9.90211 -9.76854 -9.51035 -8.20036 -6.30728 0.04507 0.27097 0.98188 1.40146 1.41654 1.52761 1.63521 2.40769 2.50239 3.00732 3.13249 3.27202 3.47585 3.69383 3.76992 3.87448 4.00041 4.21648 4.25243 4.27369 4.30401 4.32047 4.37913 4.64674 4.65692 4.69201 4.81014 4.84523 4.91850 4.98876 5.03444 5.17691 5.21638 5.22865 5.24849 5.32802 5.43076 5.51722 5.72606 5.75735 5.86111 5.91135 6.10192 6.26156 6.55148 6.85942 7.38358 8.91965 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.015846 B = 0.002793 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.530620 B =10022.617476 C =11032.148619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.353 6.353 3 C 0.439 3.561 4 O -0.534 6.534 5 C 0.140 3.860 6 H 0.143 0.857 7 N -0.650 5.650 8 C 0.068 3.932 9 C -0.091 4.091 10 C 0.026 3.974 11 C -0.543 4.543 12 H 0.059 0.941 13 C -0.001 4.001 14 N -0.934 5.934 15 Si 0.965 3.035 16 H -0.270 1.270 17 H -0.282 1.282 18 H -0.265 1.265 19 C -0.082 4.082 20 C -0.081 4.081 21 C -0.153 4.153 22 C 0.082 3.918 23 F -0.145 7.145 24 C -0.121 4.121 25 C -0.113 4.113 26 C -0.069 4.069 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.135 0.865 30 H 0.351 0.649 31 H 0.081 0.919 32 H 0.020 0.980 33 H 0.045 0.955 34 H 0.061 0.939 35 H -0.003 1.003 36 H -0.013 1.013 37 H 0.264 0.736 38 H 0.132 0.868 39 H 0.149 0.851 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.066 0.934 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.420 -22.099 15.857 27.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.267 6.267 3 C 0.281 3.719 4 O -0.423 6.423 5 C 0.028 3.972 6 H 0.161 0.839 7 N -0.281 5.281 8 C -0.061 4.061 9 C -0.129 4.129 10 C -0.011 4.011 11 C -0.581 4.581 12 H 0.077 0.923 13 C -0.199 4.199 14 N -0.574 5.574 15 Si 0.789 3.211 16 H -0.196 1.196 17 H -0.207 1.207 18 H -0.189 1.189 19 C -0.083 4.083 20 C -0.099 4.099 21 C -0.172 4.172 22 C 0.063 3.937 23 F -0.123 7.123 24 C -0.122 4.122 25 C -0.169 4.169 26 C -0.087 4.087 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.153 0.847 30 H 0.172 0.828 31 H 0.100 0.900 32 H 0.038 0.962 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.016 0.984 36 H 0.005 0.995 37 H 0.072 0.928 38 H 0.150 0.850 39 H 0.166 0.834 40 H 0.103 0.897 41 H 0.108 0.892 42 H 0.085 0.915 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -2.981 -21.947 15.737 27.170 hybrid contribution -1.074 1.356 -0.312 1.758 sum -4.055 -20.591 15.425 26.045 Atomic orbital electron populations 1.23555 0.75145 1.05784 1.02245 1.86531 1.24692 1.32345 1.83156 1.25335 0.93675 0.81698 0.71191 1.90703 1.67452 1.37487 1.46663 1.20388 0.84293 0.92276 1.00270 0.83924 1.60972 1.54806 1.00584 1.11742 1.22007 0.99193 0.96265 0.88639 1.21346 1.00619 0.93355 0.97606 1.18952 0.94743 0.94850 0.92575 1.21700 1.45445 0.97791 0.93162 0.92262 1.25983 0.95411 1.03370 0.95122 1.70094 1.50254 1.38665 0.98384 0.85448 0.78645 0.79005 0.77967 1.19571 1.20740 1.18885 1.19308 1.01340 0.94809 0.92879 1.20890 0.97834 0.99896 0.91273 1.21239 1.01339 0.93859 1.00734 1.17801 1.00392 0.92408 0.83076 1.91457 1.86086 1.82969 1.51809 1.20136 1.01687 0.98855 0.91513 1.20789 1.01383 0.90462 1.04304 1.20980 0.95681 0.92973 0.99097 0.92156 0.92456 0.84684 0.82847 0.90024 0.96153 0.93668 0.92067 0.98435 0.99456 0.92763 0.85005 0.83361 0.89746 0.89178 0.91462 0.82316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 113.37 1.20 1.62 16 2 O -0.35 -7.44 10.48 -51.44 -0.54 -7.98 16 3 C 0.44 11.15 7.07 71.24 0.50 11.65 16 4 O -0.53 -17.10 15.06 21.96 0.33 -16.77 16 5 C 0.14 3.17 2.70 43.42 0.12 3.29 16 6 H 0.14 2.74 7.66 -2.39 -0.02 2.72 16 7 N -0.65 -18.06 5.55 -499.36 -2.77 -20.83 16 8 C 0.07 2.30 5.38 86.31 0.46 2.76 16 9 C -0.09 -3.83 5.41 30.60 0.17 -3.66 16 10 C 0.03 1.42 4.97 29.85 0.15 1.57 16 11 C -0.54 -31.57 9.11 25.60 0.23 -31.34 16 12 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 13 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 14 N -0.93 -57.54 13.29 21.45 0.28 -57.26 16 15 Si 0.96 44.94 29.54 68.60 2.03 46.97 16 16 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 17 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 18 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 19 C -0.08 -1.66 4.88 -19.86 -0.10 -1.76 16 20 C -0.08 -1.65 9.32 22.26 0.21 -1.45 16 21 C -0.15 -2.93 10.03 22.31 0.22 -2.71 16 22 C 0.08 1.62 7.24 22.38 0.16 1.78 16 23 F -0.14 -2.97 16.48 44.97 0.74 -2.23 16 24 C -0.12 -2.05 5.89 -19.82 -0.12 -2.17 16 25 C -0.11 -1.34 9.83 71.23 0.70 -0.64 16 26 C -0.07 -1.15 9.32 22.26 0.21 -0.94 16 27 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 28 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 29 H 0.14 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.35 10.08 7.09 -89.69 -0.64 9.44 16 31 H 0.08 2.63 8.06 -2.39 -0.02 2.61 16 32 H 0.02 0.74 7.62 -2.39 -0.02 0.73 16 33 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 36 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 37 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 38 H 0.13 2.68 7.24 -2.91 -0.02 2.66 16 39 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 40 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.09 0.78 8.09 -2.38 -0.02 0.76 16 42 H 0.07 0.84 7.64 -2.38 -0.02 0.82 16 43 H 0.16 1.82 8.03 -2.91 -0.02 1.80 16 Total: -1.00 -70.33 369.54 5.02 -65.30 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.37 Total: 14.38 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: 4.58 Total: -21.59 kcal Atomic # 7 Polarization: -75.60 SS G_CDS: -2.49 Total: -78.08 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.21 Total: -24.75 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.74 Total: -2.23 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -70.33 5.02 -65.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185762335.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.300 kcal (2) G-P(sol) polarization free energy of solvation -70.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds