Wall clock time and date at job start Fri Apr 10 2020 22:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46891 * 2 1 4 4 H 1.08999 * 109.46844 * 55.00335 * 3 2 1 5 5 O 1.42901 * 109.47446 * 294.99996 * 3 2 1 6 6 C 1.35954 * 116.99679 * 94.14413 * 5 3 2 7 7 C 1.38654 * 120.06752 * 2.28847 * 6 5 3 8 8 C 1.38182 * 119.96842 * 179.72061 * 7 6 5 9 9 C 1.38254 * 120.09759 * 0.55139 * 8 7 6 10 10 C 1.38262 * 120.12364 * 359.72384 * 9 8 7 11 11 C 1.38330 * 120.03021 * 0.02562 * 10 9 8 12 12 F 1.35100 * 120.04895 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.46903 * 174.99620 * 3 2 1 14 14 O 1.21285 * 119.99634 * 115.00276 * 13 3 2 15 15 N 1.34778 * 120.00291 * 295.00318 * 13 3 2 16 16 C 1.46492 * 119.99775 * 359.97438 * 15 13 3 17 17 C 1.46499 * 119.99850 * 179.97438 * 15 13 3 18 18 H 1.09001 * 109.47657 * 0.02562 * 17 15 13 19 19 C 1.53006 * 109.47006 * 120.00180 * 17 15 13 20 20 C 1.50701 * 109.47255 * 239.99683 * 17 15 13 21 21 H 1.08000 * 119.99634 * 0.02562 * 20 17 15 22 22 C 1.37872 * 120.00409 * 179.97438 * 20 17 15 23 23 N 1.31510 * 120.00288 * 180.02562 * 22 20 17 24 24 Si 1.86808 * 119.99801 * 0.02562 * 22 20 17 25 25 H 1.48491 * 109.47022 * 89.99504 * 24 22 20 26 26 H 1.48498 * 109.46969 * 209.99628 * 24 22 20 27 27 H 1.48498 * 109.46818 * 329.99369 * 24 22 20 28 28 H 1.09001 * 109.47119 * 300.00114 * 1 2 3 29 29 H 1.09002 * 109.47128 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46768 * 60.00052 * 1 2 3 31 31 H 1.09000 * 109.47163 * 119.99673 * 2 1 3 32 32 H 1.09002 * 109.47414 * 240.00344 * 2 1 3 33 33 H 1.08007 * 120.01579 * 359.97438 * 7 6 5 34 34 H 1.08004 * 119.95103 * 180.28053 * 8 7 6 35 35 H 1.08003 * 119.94096 * 179.74668 * 9 8 7 36 36 H 1.08001 * 119.98058 * 179.97438 * 10 9 8 37 37 H 1.08998 * 109.47370 * 90.00265 * 16 15 13 38 38 H 1.09003 * 109.47283 * 210.00150 * 16 15 13 39 39 H 1.08999 * 109.47948 * 329.99711 * 16 15 13 40 40 H 1.09007 * 109.46834 * 299.99645 * 19 17 15 41 41 H 1.08993 * 109.47209 * 59.99547 * 19 17 15 42 42 H 1.08999 * 109.46811 * 180.02562 * 19 17 15 43 43 H 0.97005 * 120.00525 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 8 1.6619 2.0815 -1.2210 6 6 0.5054 2.7961 -1.2113 7 6 -0.2249 2.9198 -0.0392 8 6 -1.3971 3.6515 -0.0302 9 6 -1.8490 4.2510 -1.1911 10 6 -1.1269 4.1254 -2.3635 11 6 0.0500 3.3985 -2.3772 12 9 0.7561 3.2760 -3.5224 13 6 3.5419 1.4443 0.1239 14 8 4.2250 1.8612 -0.7875 15 7 4.1260 0.9828 1.2475 16 6 3.3008 0.4799 2.3484 17 6 5.5860 0.9841 1.3676 18 1 6.0252 1.3917 0.4571 19 6 5.9986 1.8461 2.5625 20 6 6.0744 -0.4267 1.5736 21 1 5.3678 -1.2426 1.6108 22 6 7.4232 -0.6758 1.7134 23 7 7.8493 -1.9070 1.8927 24 14 8.6453 0.7355 1.6483 25 1 8.8553 1.2719 3.0169 26 1 9.9377 0.2463 1.1046 27 1 8.1144 1.8099 0.7715 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 0.1245 2.4480 0.8674 34 1 -1.9634 3.7514 0.8840 35 1 -2.7677 4.8188 -1.1822 36 1 -1.4823 4.5943 -3.2691 37 1 3.1303 -0.5886 2.2161 38 1 3.8138 0.6514 3.2948 39 1 2.3443 1.0024 2.3539 40 1 5.6454 2.8665 2.4135 41 1 5.5595 1.4389 3.4731 42 1 7.0850 1.8474 2.6516 43 1 8.7983 -2.0823 1.9915 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299129212.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:19:31 Heat of formation + Delta-G solvation = -72.301367 kcal Electronic energy + Delta-G solvation = -26409.092397 eV Core-core repulsion = 22563.347238 eV Total energy + Delta-G solvation = -3845.745159 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.78410 -40.77998 -39.15726 -37.49088 -35.59733 -34.02583 -32.57850 -30.94094 -30.50168 -30.10979 -27.36353 -26.41417 -25.15587 -23.62499 -22.65626 -22.24708 -20.82575 -18.87532 -18.69403 -17.13062 -17.10341 -16.65002 -16.30078 -16.03115 -15.70785 -15.36641 -14.99037 -14.76421 -14.60760 -14.37186 -13.81451 -13.52356 -13.11188 -13.06366 -12.93202 -12.58381 -12.43943 -12.29132 -12.17369 -12.03306 -11.91180 -11.86626 -11.65102 -11.49233 -11.20795 -10.97401 -10.73478 -10.57793 -10.18451 -9.68711 -9.41213 -9.16107 -9.06293 -8.67667 -8.28763 -7.85809 -6.18613 -4.19905 0.90347 1.06051 2.70110 3.04471 3.20595 3.35217 3.36044 3.37777 3.78049 4.10613 4.31903 4.45257 4.54399 4.61465 4.71716 4.78313 4.98679 4.99724 5.10143 5.14982 5.29455 5.32814 5.46950 5.56003 5.73017 5.81128 5.83366 5.84031 5.94054 5.98152 6.06365 6.14407 6.16583 6.20300 6.27415 6.39244 6.45655 6.77525 6.98906 7.17280 7.26458 7.56109 8.03949 8.39122 8.72652 8.82515 9.41898 10.93919 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.023930 B = 0.003614 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.792521 B = 7745.401608 C = 8063.753382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.149 4.149 3 C 0.067 3.933 4 H 0.099 0.901 5 O -0.272 6.272 6 C 0.108 3.892 7 C -0.189 4.189 8 C -0.088 4.088 9 C -0.136 4.136 10 C -0.117 4.117 11 C 0.066 3.934 12 F -0.130 7.130 13 C 0.508 3.492 14 O -0.527 6.527 15 N -0.582 5.582 16 C 0.081 3.919 17 C 0.231 3.769 18 H 0.064 0.936 19 C -0.162 4.162 20 C -0.529 4.529 21 H 0.079 0.921 22 C 0.077 3.923 23 N -0.893 5.893 24 Si 0.882 3.118 25 H -0.277 1.277 26 H -0.293 1.293 27 H -0.263 1.263 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.142 0.858 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.140 0.860 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.052 0.948 40 H 0.033 0.967 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.190 9.559 -0.104 23.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.187 4.187 3 C 0.007 3.993 4 H 0.116 0.884 5 O -0.184 6.184 6 C 0.061 3.939 7 C -0.208 4.208 8 C -0.107 4.107 9 C -0.155 4.155 10 C -0.136 4.136 11 C 0.046 3.954 12 F -0.109 7.109 13 C 0.292 3.708 14 O -0.403 6.403 15 N -0.314 5.314 16 C -0.063 4.063 17 C 0.129 3.871 18 H 0.081 0.919 19 C -0.220 4.220 20 C -0.567 4.567 21 H 0.097 0.903 22 C -0.126 4.126 23 N -0.531 5.531 24 Si 0.712 3.288 25 H -0.203 1.203 26 H -0.220 1.220 27 H -0.188 1.188 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.116 0.884 32 H 0.101 0.899 33 H 0.159 0.841 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.158 0.842 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.071 0.929 40 H 0.053 0.947 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -20.462 9.607 -0.765 22.618 hybrid contribution 0.838 0.480 0.151 0.978 sum -19.624 10.087 -0.615 22.073 Atomic orbital electron populations 1.21943 0.94795 1.02502 1.01884 1.22167 0.96802 0.94202 1.05490 1.22517 0.94824 0.95073 0.86893 0.88406 1.86318 1.35619 1.62068 1.34415 1.19146 0.87682 0.93583 0.93524 1.21291 0.97586 1.04571 0.97308 1.20984 0.95288 0.95821 0.98570 1.20890 1.00723 1.01860 0.91983 1.21017 0.93246 0.99079 1.00225 1.17024 0.93496 1.03851 0.80996 1.91527 1.77795 1.94588 1.46969 1.19921 0.88291 0.79308 0.83237 1.90705 1.64442 1.46693 1.38437 1.47781 1.08579 1.60447 1.14628 1.21777 0.93818 0.99175 0.91510 1.19341 0.75039 0.96955 0.95742 0.91853 1.22469 1.00615 0.98206 1.00702 1.21118 0.93351 0.91163 1.51074 0.90253 1.24850 0.98055 0.95575 0.94146 1.69864 1.15328 1.19099 1.48775 0.86934 0.80674 0.82856 0.78379 1.20342 1.22039 1.18777 0.92393 0.91805 0.92450 0.88428 0.89873 0.84097 0.85093 0.85002 0.84197 0.92109 0.90296 0.92901 0.94749 0.92413 0.92965 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.45 37.16 0.31 -1.23 16 2 C -0.15 -1.94 5.38 -26.73 -0.14 -2.08 16 3 C 0.07 1.01 1.76 -27.88 -0.05 0.96 16 4 H 0.10 1.18 4.36 -51.93 -0.23 0.95 16 5 O -0.27 -4.64 9.07 -39.45 -0.36 -5.00 16 6 C 0.11 1.49 5.34 -39.18 -0.21 1.28 16 7 C -0.19 -1.95 7.16 -39.45 -0.28 -2.24 16 8 C -0.09 -0.72 10.04 -39.60 -0.40 -1.12 16 9 C -0.14 -1.08 10.04 -39.57 -0.40 -1.48 16 10 C -0.12 -1.15 10.02 -39.54 -0.40 -1.54 16 11 C 0.07 0.89 7.31 -39.30 -0.29 0.61 16 12 F -0.13 -2.05 17.11 2.25 0.04 -2.02 16 13 C 0.51 10.31 7.10 -10.98 -0.08 10.23 16 14 O -0.53 -13.21 15.84 -14.31 -0.23 -13.44 16 15 N -0.58 -11.57 2.75 -175.26 -0.48 -12.05 16 16 C 0.08 1.20 8.16 59.84 0.49 1.69 16 17 C 0.23 5.48 2.23 -69.08 -0.15 5.33 16 18 H 0.06 1.70 5.96 -51.93 -0.31 1.39 16 19 C -0.16 -3.40 8.65 37.16 0.32 -3.08 16 20 C -0.53 -14.35 8.95 -34.44 -0.31 -14.66 16 21 H 0.08 2.29 7.89 -52.49 -0.41 1.88 16 22 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 23 N -0.89 -26.59 13.96 55.43 0.77 -25.81 16 24 Si 0.88 21.69 24.37 -169.99 -4.14 17.55 16 25 H -0.28 -6.46 6.87 56.52 0.39 -6.07 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 H -0.26 -6.44 6.53 56.52 0.37 -6.07 16 28 H 0.06 0.46 6.80 -51.93 -0.35 0.11 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.63 6.27 -51.93 -0.33 0.31 16 31 H 0.10 1.20 5.06 -51.93 -0.26 0.93 16 32 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.14 1.24 4.54 -52.48 -0.24 1.00 16 34 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 35 H 0.13 0.68 8.06 -52.48 -0.42 0.25 16 36 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.06 0.89 6.95 -51.93 -0.36 0.53 16 38 H 0.08 1.16 6.43 -51.93 -0.33 0.82 16 39 H 0.05 0.57 6.11 -51.93 -0.32 0.25 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 1.10 6.66 -51.93 -0.35 0.75 16 42 H 0.05 1.15 3.27 -51.93 -0.17 0.98 16 43 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 336.87 15.07 5.08 5.08 Total: -1.00 -34.18 336.87 -6.37 -40.56 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -5.38 Total: 0.40 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -1.68 Total: -5.26 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.29 Total: -37.87 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.58 Total: -18.44 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.14 Total: 17.55 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.18 -6.37 -40.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299129212.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.744 kcal (2) G-P(sol) polarization free energy of solvation -34.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds