Wall clock time and date at job start Fri Apr 10 2020 22:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46891 * 2 1 4 4 H 1.08999 * 109.46844 * 55.00335 * 3 2 1 5 5 O 1.42901 * 109.47446 * 294.99996 * 3 2 1 6 6 C 1.35954 * 116.99679 * 94.14413 * 5 3 2 7 7 C 1.38654 * 120.06752 * 2.28847 * 6 5 3 8 8 C 1.38182 * 119.96842 * 179.72061 * 7 6 5 9 9 C 1.38254 * 120.09759 * 0.55139 * 8 7 6 10 10 C 1.38262 * 120.12364 * 359.72384 * 9 8 7 11 11 C 1.38330 * 120.03021 * 0.02562 * 10 9 8 12 12 F 1.35100 * 120.04895 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.46903 * 174.99620 * 3 2 1 14 14 O 1.21285 * 119.99634 * 115.00276 * 13 3 2 15 15 N 1.34778 * 120.00291 * 295.00318 * 13 3 2 16 16 C 1.46492 * 119.99775 * 359.97438 * 15 13 3 17 17 C 1.46499 * 119.99850 * 179.97438 * 15 13 3 18 18 H 1.09001 * 109.47657 * 0.02562 * 17 15 13 19 19 C 1.53006 * 109.47006 * 120.00180 * 17 15 13 20 20 C 1.50701 * 109.47255 * 239.99683 * 17 15 13 21 21 H 1.08000 * 119.99634 * 0.02562 * 20 17 15 22 22 C 1.37872 * 120.00409 * 179.97438 * 20 17 15 23 23 N 1.31510 * 120.00288 * 180.02562 * 22 20 17 24 24 Si 1.86808 * 119.99801 * 0.02562 * 22 20 17 25 25 H 1.48491 * 109.47022 * 89.99504 * 24 22 20 26 26 H 1.48498 * 109.46969 * 209.99628 * 24 22 20 27 27 H 1.48498 * 109.46818 * 329.99369 * 24 22 20 28 28 H 1.09001 * 109.47119 * 300.00114 * 1 2 3 29 29 H 1.09002 * 109.47128 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46768 * 60.00052 * 1 2 3 31 31 H 1.09000 * 109.47163 * 119.99673 * 2 1 3 32 32 H 1.09002 * 109.47414 * 240.00344 * 2 1 3 33 33 H 1.08007 * 120.01579 * 359.97438 * 7 6 5 34 34 H 1.08004 * 119.95103 * 180.28053 * 8 7 6 35 35 H 1.08003 * 119.94096 * 179.74668 * 9 8 7 36 36 H 1.08001 * 119.98058 * 179.97438 * 10 9 8 37 37 H 1.08998 * 109.47370 * 90.00265 * 16 15 13 38 38 H 1.09003 * 109.47283 * 210.00150 * 16 15 13 39 39 H 1.08999 * 109.47948 * 329.99711 * 16 15 13 40 40 H 1.09007 * 109.46834 * 299.99645 * 19 17 15 41 41 H 1.08993 * 109.47209 * 59.99547 * 19 17 15 42 42 H 1.08999 * 109.46811 * 180.02562 * 19 17 15 43 43 H 0.97005 * 120.00525 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 8 1.6619 2.0815 -1.2210 6 6 0.5054 2.7961 -1.2113 7 6 -0.2249 2.9198 -0.0392 8 6 -1.3971 3.6515 -0.0302 9 6 -1.8490 4.2510 -1.1911 10 6 -1.1269 4.1254 -2.3635 11 6 0.0500 3.3985 -2.3772 12 9 0.7561 3.2760 -3.5224 13 6 3.5419 1.4443 0.1239 14 8 4.2250 1.8612 -0.7875 15 7 4.1260 0.9828 1.2475 16 6 3.3008 0.4799 2.3484 17 6 5.5860 0.9841 1.3676 18 1 6.0252 1.3917 0.4571 19 6 5.9986 1.8461 2.5625 20 6 6.0744 -0.4267 1.5736 21 1 5.3678 -1.2426 1.6108 22 6 7.4232 -0.6758 1.7134 23 7 7.8493 -1.9070 1.8927 24 14 8.6453 0.7355 1.6483 25 1 8.8553 1.2719 3.0169 26 1 9.9377 0.2463 1.1046 27 1 8.1144 1.8099 0.7715 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 0.1245 2.4480 0.8674 34 1 -1.9634 3.7514 0.8840 35 1 -2.7677 4.8188 -1.1822 36 1 -1.4823 4.5943 -3.2691 37 1 3.1303 -0.5886 2.2161 38 1 3.8138 0.6514 3.2948 39 1 2.3443 1.0024 2.3539 40 1 5.6454 2.8665 2.4135 41 1 5.5595 1.4389 3.4731 42 1 7.0850 1.8474 2.6516 43 1 8.7983 -2.0823 1.9915 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299129212.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:19:30 Heat of formation + Delta-G solvation = -94.839285 kcal Electronic energy + Delta-G solvation = -26410.069715 eV Core-core repulsion = 22563.347238 eV Total energy + Delta-G solvation = -3846.722476 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.82900 -41.93647 -40.46602 -38.48295 -37.31634 -35.37065 -34.33736 -32.27159 -31.63726 -30.96995 -28.49250 -27.77085 -27.15145 -24.47763 -23.70568 -23.44665 -22.09260 -20.24646 -19.87365 -18.95536 -18.11612 -17.93092 -17.62146 -17.29129 -17.15983 -16.50352 -16.18881 -16.04626 -15.80619 -15.47856 -15.03768 -14.85698 -14.77777 -14.20729 -14.15083 -14.02757 -13.75066 -13.59272 -13.40601 -13.19429 -13.13097 -12.97707 -12.87907 -12.63127 -12.61235 -12.33409 -12.08016 -11.88030 -11.62440 -11.55756 -11.37726 -10.82270 -10.67975 -9.89009 -9.51714 -9.18856 -8.37536 -6.42055 0.15317 0.27911 1.23068 1.34080 1.41896 1.46166 1.58506 2.25250 2.45781 2.63582 2.97711 3.25700 3.35021 3.47955 3.67080 3.82123 3.95778 4.13321 4.30005 4.33866 4.34887 4.38328 4.42931 4.52800 4.54746 4.56958 4.68550 4.71761 4.89940 4.96507 4.99871 5.08736 5.10470 5.12587 5.26522 5.28718 5.32259 5.43944 5.45042 5.62102 5.72271 6.13698 6.26666 6.56066 6.62146 7.12164 7.26962 8.78174 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.023930 B = 0.003614 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.792521 B = 7745.401608 C = 8063.753382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.145 4.145 3 C 0.080 3.920 4 H 0.138 0.862 5 O -0.313 6.313 6 C 0.075 3.925 7 C -0.187 4.187 8 C -0.076 4.076 9 C -0.124 4.124 10 C -0.115 4.115 11 C 0.022 3.978 12 F -0.158 7.158 13 C 0.495 3.505 14 O -0.590 6.590 15 N -0.584 5.584 16 C 0.071 3.929 17 C 0.230 3.770 18 H 0.025 0.975 19 C -0.154 4.154 20 C -0.525 4.525 21 H 0.050 0.950 22 C 0.026 3.974 23 N -0.936 5.936 24 Si 0.937 3.063 25 H -0.248 1.248 26 H -0.297 1.297 27 H -0.268 1.268 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.044 0.956 31 H 0.107 0.893 32 H 0.049 0.951 33 H 0.160 0.840 34 H 0.172 0.828 35 H 0.171 0.829 36 H 0.158 0.842 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.103 0.897 40 H 0.055 0.945 41 H 0.079 0.921 42 H 0.042 0.958 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.715 11.618 2.594 27.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.183 4.183 3 C 0.021 3.979 4 H 0.155 0.845 5 O -0.227 6.227 6 C 0.029 3.971 7 C -0.205 4.205 8 C -0.093 4.093 9 C -0.141 4.141 10 C -0.134 4.134 11 C 0.003 3.997 12 F -0.137 7.137 13 C 0.283 3.717 14 O -0.471 6.471 15 N -0.315 5.315 16 C -0.070 4.070 17 C 0.127 3.873 18 H 0.042 0.958 19 C -0.211 4.211 20 C -0.564 4.564 21 H 0.068 0.932 22 C -0.174 4.174 23 N -0.576 5.576 24 Si 0.765 3.235 25 H -0.173 1.173 26 H -0.224 1.224 27 H -0.193 1.193 28 H 0.108 0.892 29 H 0.094 0.906 30 H 0.063 0.937 31 H 0.125 0.875 32 H 0.068 0.932 33 H 0.177 0.823 34 H 0.190 0.810 35 H 0.188 0.812 36 H 0.175 0.825 37 H 0.078 0.922 38 H 0.103 0.897 39 H 0.121 0.879 40 H 0.074 0.926 41 H 0.098 0.902 42 H 0.060 0.940 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -24.039 11.666 1.977 26.793 hybrid contribution 1.770 -0.163 -0.733 1.923 sum -22.269 11.503 1.244 25.095 Atomic orbital electron populations 1.21906 0.91823 1.03640 1.02820 1.22176 0.99259 0.92528 1.04349 1.22453 0.90650 0.96733 0.88087 0.84536 1.86256 1.37810 1.63303 1.35310 1.19492 0.87626 0.94789 0.95151 1.21539 0.97927 1.04733 0.96346 1.21503 0.94127 0.93602 1.00118 1.21410 1.01196 1.00658 0.90877 1.21347 0.91892 0.98046 1.02109 1.17667 0.95220 1.06327 0.80498 1.91442 1.78757 1.95070 1.48475 1.20979 0.90733 0.77868 0.82168 1.90662 1.66416 1.49443 1.40535 1.47822 1.07543 1.60164 1.16016 1.22135 0.95333 0.99756 0.89782 1.19014 0.77785 0.95098 0.95397 0.95755 1.22315 1.00072 0.98875 0.99880 1.21324 0.92968 0.92300 1.49795 0.93169 1.25592 0.99967 0.97709 0.94087 1.69984 1.15853 1.21077 1.50668 0.86039 0.78034 0.79863 0.79609 1.17346 1.22415 1.19315 0.89175 0.90614 0.93657 0.87467 0.93177 0.82298 0.81008 0.81193 0.82456 0.92204 0.89706 0.87865 0.92553 0.90220 0.93959 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 8.45 71.98 0.61 -1.90 16 2 C -0.15 -3.68 5.38 30.60 0.16 -3.51 16 3 C 0.08 2.37 1.76 29.85 0.05 2.42 16 4 H 0.14 2.83 4.36 -2.39 -0.01 2.82 16 5 O -0.31 -11.02 9.07 -74.04 -0.67 -11.69 16 6 C 0.08 2.03 5.34 22.53 0.12 2.15 16 7 C -0.19 -3.19 7.16 22.36 0.16 -3.03 16 8 C -0.08 -0.82 10.04 22.26 0.22 -0.60 16 9 C -0.12 -1.39 10.04 22.28 0.22 -1.16 16 10 C -0.12 -2.03 10.02 22.30 0.22 -1.81 16 11 C 0.02 0.61 7.31 22.45 0.16 0.78 16 12 F -0.16 -5.39 17.11 44.97 0.77 -4.62 16 13 C 0.49 20.60 7.10 87.66 0.62 21.22 16 14 O -0.59 -31.46 15.84 15.94 0.25 -31.21 16 15 N -0.58 -23.18 2.75 -826.80 -2.28 -25.46 16 16 C 0.07 1.95 8.16 127.77 1.04 3.00 16 17 C 0.23 11.10 2.23 44.25 0.10 11.20 16 18 H 0.02 1.37 5.96 -2.39 -0.01 1.36 16 19 C -0.15 -6.20 8.65 71.98 0.62 -5.57 16 20 C -0.53 -29.31 8.95 25.60 0.23 -29.08 16 21 H 0.05 3.02 7.89 -2.91 -0.02 2.99 16 22 C 0.03 1.47 5.45 84.65 0.46 1.93 16 23 N -0.94 -57.23 13.96 21.44 0.30 -56.93 16 24 Si 0.94 45.34 24.37 68.60 1.67 47.01 16 25 H -0.25 -10.83 6.87 99.48 0.68 -10.15 16 26 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 27 H -0.27 -13.09 6.53 99.48 0.65 -12.44 16 28 H 0.09 0.98 6.80 -2.39 -0.02 0.96 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.04 0.92 6.27 -2.38 -0.01 0.91 16 31 H 0.11 2.45 5.06 -2.39 -0.01 2.44 16 32 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.16 1.97 4.54 -2.91 -0.01 1.95 16 34 H 0.17 0.54 8.06 -2.91 -0.02 0.52 16 35 H 0.17 0.66 8.06 -2.91 -0.02 0.64 16 36 H 0.16 2.07 8.06 -2.91 -0.02 2.04 16 37 H 0.06 1.67 6.95 -2.39 -0.02 1.65 16 38 H 0.08 2.24 6.43 -2.39 -0.02 2.23 16 39 H 0.10 1.76 6.11 -2.39 -0.01 1.75 16 40 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 41 H 0.08 2.83 6.66 -2.39 -0.02 2.81 16 42 H 0.04 1.78 3.27 -2.39 -0.01 1.78 16 43 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 Total: -1.00 -82.98 336.87 6.03 -76.95 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 0.97 Total: 9.92 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 5.02 Total: -3.97 kcal Atomic # 7 Polarization: -80.41 SS G_CDS: -1.98 Total: -82.38 kcal Atomic # 8 Polarization: -42.48 SS G_CDS: -0.42 Total: -42.90 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 0.77 Total: -4.62 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.67 Total: 47.01 kcal Total: -82.98 6.03 -76.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299129212.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.893 kcal (2) G-P(sol) polarization free energy of solvation -82.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds