Wall clock time and date at job start Fri Apr 10 2020 22:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47205 * 2 1 4 4 C 1.50700 * 109.47250 * 239.99991 * 2 1 3 5 5 H 1.07996 * 120.00422 * 239.99955 * 4 2 1 6 6 C 1.37879 * 119.99920 * 60.00196 * 4 2 1 7 7 N 1.31517 * 120.00353 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00156 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47150 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47255 * 119.99708 * 8 6 4 11 11 H 1.48494 * 109.47804 * 240.00161 * 8 6 4 12 12 C 1.53000 * 109.47220 * 119.99837 * 2 1 3 13 13 N 1.46896 * 109.47039 * 300.00297 * 12 2 1 14 14 C 1.46896 * 110.99964 * 179.97438 * 13 12 2 15 15 H 1.09006 * 109.47139 * 34.99743 * 14 13 12 16 16 C 1.53000 * 109.47333 * 154.99899 * 14 13 12 17 17 C 1.50696 * 109.46963 * 295.00009 * 16 14 13 18 18 C 1.38248 * 119.97128 * 89.99994 * 17 16 14 19 19 C 1.38196 * 120.02484 * 179.97438 * 18 17 16 20 20 C 1.38458 * 119.97492 * 359.97438 * 19 18 17 21 21 F 1.35104 * 120.02786 * 179.97438 * 20 19 18 22 22 C 1.38465 * 119.94675 * 0.24873 * 20 19 18 23 23 C 1.38196 * 119.97501 * 359.51590 * 22 20 19 24 24 C 1.50703 * 109.47082 * 275.00135 * 14 13 12 25 25 O 1.20818 * 120.00200 * 359.97438 * 24 14 13 26 26 O 1.34231 * 119.99885 * 179.97438 * 24 14 13 27 27 H 1.08994 * 109.47192 * 300.00345 * 1 2 3 28 28 H 1.09008 * 109.46591 * 60.00152 * 1 2 3 29 29 H 1.08999 * 109.47029 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47467 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47495 * 299.99873 * 3 2 1 32 32 H 1.09004 * 109.47335 * 59.99812 * 3 2 1 33 33 H 0.97001 * 120.00366 * 180.02562 * 7 6 4 34 34 H 1.08997 * 109.47287 * 179.97438 * 12 2 1 35 35 H 1.09008 * 109.46453 * 60.00196 * 12 2 1 36 36 H 1.00903 * 111.00071 * 56.04469 * 13 12 2 37 37 H 1.09002 * 109.47296 * 175.00097 * 16 14 13 38 38 H 1.09001 * 109.47017 * 55.00603 * 16 14 13 39 39 H 1.08001 * 119.98900 * 359.97438 * 18 17 16 40 40 H 1.07996 * 120.01603 * 179.97438 * 19 18 17 41 41 H 1.08007 * 120.01049 * 179.72700 * 22 20 19 42 42 H 1.07993 * 119.98770 * 180.23077 * 23 22 20 43 43 H 0.96701 * 117.00047 * 180.02562 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6035 8 14 2.3226 -1.1194 -4.0079 9 1 3.1485 -2.2855 -3.6038 10 1 1.1679 -1.5865 -4.8165 11 1 3.1474 -0.1858 -4.8161 12 6 2.0400 -0.7212 1.2493 13 7 1.5503 -0.0287 2.4486 14 6 2.0208 -0.6951 3.6703 15 1 3.0227 -1.0915 3.5050 16 6 2.0545 0.3131 4.8206 17 6 3.0806 1.3768 4.5263 18 6 2.7132 2.5200 3.8412 19 6 3.6531 3.4965 3.5712 20 6 4.9631 3.3297 3.9875 21 9 5.8830 4.2834 3.7237 22 6 5.3308 2.1822 4.6695 23 6 4.3881 1.2093 4.9427 24 6 1.0852 -1.8240 4.0188 25 8 0.1248 -2.0498 3.3215 26 8 1.3190 -2.5785 5.1041 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 0.7082 1.1609 -3.4845 34 1 3.1300 -0.7216 1.2490 35 1 1.6766 -1.7489 1.2492 36 1 0.5437 0.0413 2.4401 37 1 2.3179 -0.1998 5.7457 38 1 1.0729 0.7747 4.9280 39 1 1.6913 2.6501 3.5170 40 1 3.3661 4.3893 3.0357 41 1 6.3533 2.0490 4.9909 42 1 4.6739 0.3159 5.4779 43 1 0.6914 -3.2912 5.2868 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603575750.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:17:07 Heat of formation + Delta-G solvation = -138.018045 kcal Electronic energy + Delta-G solvation = -26230.672360 eV Core-core repulsion = 22382.077512 eV Total energy + Delta-G solvation = -3848.594848 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.78390 -41.54480 -39.93748 -38.56625 -37.08124 -36.12512 -33.80042 -32.11879 -31.89356 -29.35240 -27.48888 -27.23569 -25.84464 -25.25744 -23.80602 -22.40593 -21.55673 -20.41672 -19.05157 -18.52060 -18.25648 -17.78768 -17.23188 -16.88839 -16.68688 -16.47257 -16.11683 -15.66438 -15.56090 -14.93928 -14.81133 -14.49297 -14.28320 -14.20656 -14.02396 -13.92123 -13.38347 -13.10669 -12.99243 -12.75952 -12.62210 -12.55038 -12.49655 -12.39715 -12.24475 -12.16345 -12.06769 -11.72085 -11.59326 -11.31459 -10.95178 -10.59670 -10.34437 -9.86305 -9.47346 -9.31434 -7.96835 -6.12980 0.30188 0.49037 1.19876 1.39493 1.42886 1.51779 2.13607 2.45649 2.80285 3.22591 3.25595 3.46086 3.89590 3.95534 4.08380 4.13606 4.19327 4.44331 4.51555 4.54279 4.55829 4.67143 4.85376 4.88191 5.00039 5.03438 5.17693 5.19806 5.26012 5.30869 5.34076 5.44782 5.47765 5.54600 5.62506 5.70324 5.76621 5.79425 6.02311 6.12414 6.21817 6.31429 6.44169 6.54451 6.96103 6.99965 7.54224 9.01370 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.010568 B = 0.004938 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.904555 B = 5668.626797 C = 7571.056452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.063 3.937 3 C -0.099 4.099 4 C -0.524 4.524 5 H 0.042 0.958 6 C 0.023 3.977 7 N -0.902 5.902 8 Si 0.941 3.059 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.282 1.282 12 C 0.090 3.910 13 N -0.645 5.645 14 C 0.098 3.902 15 H 0.121 0.879 16 C -0.051 4.051 17 C -0.079 4.079 18 C -0.063 4.063 19 C -0.167 4.167 20 C 0.067 3.933 21 F -0.156 7.156 22 C -0.160 4.160 23 C -0.086 4.086 24 C 0.455 3.545 25 O -0.550 6.550 26 O -0.505 6.505 27 H 0.032 0.968 28 H 0.055 0.945 29 H 0.007 0.993 30 H 0.009 0.991 31 H 0.045 0.955 32 H 0.040 0.960 33 H 0.257 0.743 34 H 0.056 0.944 35 H 0.003 0.997 36 H 0.346 0.654 37 H 0.115 0.885 38 H 0.084 0.916 39 H 0.134 0.866 40 H 0.131 0.869 41 H 0.148 0.852 42 H 0.160 0.840 43 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.279 -0.422 20.082 20.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.062 3.938 3 C -0.157 4.157 4 C -0.563 4.563 5 H 0.060 0.940 6 C -0.176 4.176 7 N -0.541 5.541 8 Si 0.768 3.232 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.208 1.208 12 C -0.039 4.039 13 N -0.278 5.278 14 C -0.015 4.015 15 H 0.139 0.861 16 C -0.089 4.089 17 C -0.079 4.079 18 C -0.081 4.081 19 C -0.186 4.186 20 C 0.048 3.952 21 F -0.135 7.135 22 C -0.179 4.179 23 C -0.104 4.104 24 C 0.297 3.703 25 O -0.440 6.440 26 O -0.317 6.317 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.026 0.974 30 H 0.028 0.972 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.021 0.979 36 H 0.168 0.832 37 H 0.134 0.866 38 H 0.102 0.898 39 H 0.152 0.848 40 H 0.149 0.851 41 H 0.166 0.834 42 H 0.178 0.822 43 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 4.750 0.436 19.667 20.237 hybrid contribution -0.653 -1.446 -1.544 2.214 sum 4.097 -1.010 18.123 18.607 Atomic orbital electron populations 1.21614 0.98461 0.97522 0.99738 1.18099 0.92021 0.93139 0.90495 1.21413 0.96905 0.97873 0.99542 1.21450 1.31059 1.11745 0.92058 0.93959 1.25502 0.95396 0.95649 1.01070 1.69968 1.37432 1.23598 1.23142 0.85770 0.78068 0.78798 0.80537 1.19740 1.21001 1.20824 1.21869 0.98232 0.93881 0.89913 1.61004 1.17520 1.49362 0.99893 1.21723 0.97799 0.89108 0.92865 0.86094 1.20508 0.98920 0.93408 0.96040 1.19733 0.94813 0.95083 0.98274 1.21011 0.99799 0.92294 0.95007 1.21275 0.92148 1.02069 1.03103 1.18043 0.86866 0.88288 1.01989 1.91444 1.66057 1.63434 1.92594 1.21304 1.02015 0.93229 1.01343 1.21205 0.91464 0.98973 0.98747 1.25226 0.84879 0.83028 0.77207 1.90767 1.31649 1.70018 1.51602 1.84523 1.57166 1.45861 1.44184 0.94922 0.92657 0.97416 0.97197 0.93641 0.94080 0.93375 0.92547 0.97882 0.83236 0.86645 0.89760 0.84807 0.85092 0.83421 0.82211 0.71672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.57 7.92 71.98 0.57 -5.00 16 2 C 0.06 3.01 0.57 -52.93 -0.03 2.98 16 3 C -0.10 -4.71 8.09 71.98 0.58 -4.13 16 4 C -0.52 -28.55 8.01 25.60 0.21 -28.34 16 5 H 0.04 2.32 7.74 -2.91 -0.02 2.30 16 6 C 0.02 1.25 5.15 84.65 0.44 1.69 16 7 N -0.90 -50.76 9.35 21.45 0.20 -50.56 16 8 Si 0.94 43.98 29.54 68.60 2.03 46.00 16 9 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 10 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 12 C 0.09 3.60 4.28 86.30 0.37 3.97 16 13 N -0.65 -20.12 4.69 -495.45 -2.33 -22.44 16 14 C 0.10 2.27 2.49 44.17 0.11 2.38 16 15 H 0.12 2.68 7.80 -2.38 -0.02 2.66 16 16 C -0.05 -0.87 4.99 29.85 0.15 -0.72 16 17 C -0.08 -1.57 4.95 -19.86 -0.10 -1.67 16 18 C -0.06 -1.49 9.30 22.26 0.21 -1.28 16 19 C -0.17 -4.26 10.03 22.31 0.22 -4.04 16 20 C 0.07 1.71 7.30 22.38 0.16 1.88 16 21 F -0.16 -4.34 17.27 44.97 0.78 -3.56 16 22 C -0.16 -3.30 10.03 22.31 0.22 -3.08 16 23 C -0.09 -1.53 9.70 22.26 0.22 -1.31 16 24 C 0.46 11.04 7.46 71.24 0.53 11.57 16 25 O -0.55 -18.26 16.06 21.99 0.35 -17.91 16 26 O -0.51 -8.17 13.23 -51.43 -0.68 -8.85 16 27 H 0.03 1.38 6.57 -2.39 -0.02 1.36 16 28 H 0.05 2.97 6.07 -2.38 -0.01 2.95 16 29 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.04 2.41 6.07 -2.39 -0.01 2.40 16 32 H 0.04 1.72 7.60 -2.38 -0.02 1.70 16 33 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 34 H 0.06 2.26 8.06 -2.39 -0.02 2.24 16 35 H 0.00 0.13 7.62 -2.38 -0.02 0.11 16 36 H 0.35 11.60 5.79 -89.69 -0.52 11.08 16 37 H 0.12 1.34 7.94 -2.39 -0.02 1.32 16 38 H 0.08 1.40 8.09 -2.39 -0.02 1.38 16 39 H 0.13 3.12 8.06 -2.91 -0.02 3.10 16 40 H 0.13 3.20 8.06 -2.91 -0.02 3.17 16 41 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 42 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 43 H 0.42 3.75 9.10 -74.06 -0.67 3.08 16 Total: -1.00 -66.12 357.01 4.05 -62.07 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -0.16 Total: 20.35 kcal Atomic # 6 Polarization: -28.95 SS G_CDS: 3.86 Total: -25.10 kcal Atomic # 7 Polarization: -70.88 SS G_CDS: -2.12 Total: -73.01 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -0.33 Total: -26.76 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.78 Total: -3.56 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -66.12 4.05 -62.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603575750.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.948 kcal (2) G-P(sol) polarization free energy of solvation -66.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds