Wall clock time and date at job start Fri Apr 10 2020 22:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46498 * 109.46906 * 2 1 4 4 C 1.34779 * 119.99564 * 274.80375 * 3 2 1 5 5 O 1.21612 * 120.00231 * 183.07296 * 4 3 2 6 6 C 1.47419 * 120.00220 * 3.07979 * 4 3 2 7 7 C 1.36090 * 126.45214 * 185.49823 * 6 4 3 8 8 O 1.34255 * 106.95128 * 179.97438 * 7 6 4 9 9 C 1.34040 * 108.22576 * 359.97438 * 8 7 6 10 10 C 1.50703 * 125.37837 * 179.97438 * 9 8 7 11 11 O 1.42895 * 109.47359 * 270.02956 * 10 9 8 12 12 C 1.42905 * 114.00443 * 179.97438 * 11 10 9 13 13 N 1.29935 * 109.24792 * 359.75053 * 9 8 7 14 14 C 1.46498 * 120.00588 * 94.80610 * 3 2 1 15 15 C 1.53496 * 114.20710 * 231.72441 * 14 3 2 16 16 N 1.47066 * 87.98397 * 220.14338 * 15 14 3 17 17 C 1.36930 * 136.05963 * 207.07914 * 16 15 14 18 18 H 1.07999 * 120.00023 * 354.71516 * 17 16 15 19 19 C 1.38812 * 120.00471 * 174.70598 * 17 16 15 20 20 N 1.31620 * 120.00723 * 183.81711 * 19 17 16 21 21 Si 1.86799 * 119.99637 * 3.81941 * 19 17 16 22 22 H 1.48498 * 109.47167 * 174.24983 * 21 19 17 23 23 H 1.48501 * 109.47329 * 294.25227 * 21 19 17 24 24 H 1.48500 * 109.47341 * 54.24973 * 21 19 17 25 25 C 1.47075 * 87.88406 * 27.34211 * 16 15 14 26 26 H 1.09005 * 109.47036 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47339 * 300.00209 * 1 2 3 28 28 H 1.08999 * 109.47197 * 60.00561 * 1 2 3 29 29 H 1.08996 * 109.47339 * 239.99791 * 2 1 3 30 30 H 1.08999 * 109.47197 * 119.99439 * 2 1 3 31 31 H 1.08004 * 126.52197 * 0.02562 * 7 6 4 32 32 H 1.09008 * 109.46966 * 30.02933 * 10 9 8 33 33 H 1.08994 * 109.47525 * 150.02452 * 10 9 8 34 34 H 1.09007 * 109.46711 * 300.00029 * 12 11 10 35 35 H 1.09000 * 109.46982 * 59.99568 * 12 11 10 36 36 H 1.08992 * 109.47263 * 179.97438 * 12 11 10 37 37 H 1.09005 * 113.27805 * 4.78872 * 14 3 2 38 38 H 1.09007 * 113.46717 * 105.36760 * 15 14 3 39 39 H 1.09000 * 113.46871 * 334.92361 * 15 14 3 40 40 H 0.97001 * 119.99418 * 5.00595 * 20 19 17 41 41 H 1.09004 * 113.46473 * 87.43792 * 25 16 15 42 42 H 1.09002 * 113.46703 * 217.87307 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1508 2.0491 -1.1632 5 8 2.6086 3.1757 -1.1688 6 6 1.7404 1.4140 -2.4287 7 6 1.9106 1.9208 -3.6802 8 8 1.3971 1.0252 -4.5384 9 6 0.9223 -0.0093 -3.8305 10 6 0.2612 -1.2332 -4.4104 11 8 -1.1470 -1.0118 -4.5102 12 6 -1.8723 -2.1176 -5.0519 13 7 1.1263 0.2075 -2.5657 14 6 2.3627 2.0365 1.2642 15 6 1.6942 3.4032 1.4672 16 7 2.9631 3.8812 2.0367 17 6 3.3401 4.8427 2.9357 18 1 2.6042 5.5214 3.3410 19 6 4.6682 4.9451 3.3265 20 7 5.0182 5.8191 4.2462 21 14 5.9587 3.8425 2.5467 22 1 7.3059 4.2398 3.0288 23 1 5.6953 2.4300 2.9222 24 1 5.9009 3.9809 1.0693 25 6 3.6494 2.8765 1.2105 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8900 31 1 2.3719 2.8637 -3.9345 32 1 0.6690 -1.4312 -5.4017 33 1 0.4494 -2.0892 -3.7625 34 1 -1.5086 -2.3335 -6.0565 35 1 -1.7284 -2.9922 -4.4176 36 1 -2.9330 -1.8705 -5.0943 37 1 2.2940 1.3728 2.1261 38 1 0.8756 3.3834 2.1868 39 1 1.4238 3.8972 0.5339 40 1 4.3396 6.3405 4.7029 41 1 3.8945 3.2317 0.2095 42 1 4.4967 2.4081 1.7114 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957056441.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:18:01 Heat of formation + Delta-G solvation = 44.360622 kcal Electronic energy + Delta-G solvation = -26212.445143 eV Core-core repulsion = 22391.678790 eV Total energy + Delta-G solvation = -3820.766354 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.70192 -40.23890 -38.42649 -37.35347 -35.81027 -34.68947 -32.26639 -31.70631 -30.13022 -28.27960 -27.58313 -26.17876 -25.22684 -24.79409 -23.05294 -22.61082 -21.66610 -20.01305 -19.32579 -17.60871 -17.54969 -17.35105 -16.70204 -16.36783 -16.19621 -16.10800 -15.81548 -15.13380 -14.99877 -14.19853 -13.91595 -13.64038 -13.47525 -13.35361 -13.04702 -12.99032 -12.89519 -12.36689 -12.10521 -11.91505 -11.77743 -11.55742 -11.30730 -11.08744 -10.90640 -10.66787 -10.44256 -10.37319 -10.20674 -9.65900 -9.31793 -9.17409 -8.97975 -8.77758 -8.17241 -6.96439 -6.20114 -3.10268 0.88455 1.66093 2.21829 2.97823 3.22574 3.39274 3.48453 3.58396 3.76259 3.78014 4.40714 4.43186 4.65388 4.70357 4.76284 4.80496 4.87691 5.00733 5.15709 5.17781 5.21307 5.25541 5.42122 5.52059 5.54993 5.56369 5.60381 5.75907 5.90851 6.07400 6.16067 6.40684 6.41862 6.44558 6.46855 6.53075 6.67568 7.20051 7.22002 7.30981 7.62025 8.32160 8.33931 9.09157 9.61563 10.49770 11.32070 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.029913 B = 0.003354 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.820084 B = 8345.259526 C = 8700.525604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.106 3.894 3 N -0.583 5.583 4 C 0.592 3.408 5 O -0.513 6.513 6 C -0.064 4.064 7 C 0.021 3.979 8 O -0.191 6.191 9 C 0.181 3.819 10 C 0.162 3.838 11 O -0.384 6.384 12 C 0.033 3.967 13 N -0.426 5.426 14 C 0.098 3.902 15 C 0.117 3.883 16 N -0.621 5.621 17 C -0.293 4.293 18 H 0.082 0.918 19 C -0.027 4.027 20 N -0.938 5.938 21 Si 1.075 2.925 22 H -0.297 1.297 23 H -0.294 1.294 24 H -0.288 1.288 25 C 0.077 3.923 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.095 0.905 30 H 0.071 0.929 31 H 0.234 0.766 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.046 0.954 35 H 0.048 0.952 36 H 0.092 0.908 37 H 0.117 0.883 38 H 0.041 0.959 39 H 0.051 0.949 40 H 0.259 0.741 41 H 0.080 0.920 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.929 -20.824 -20.911 31.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.017 4.017 3 N -0.315 5.315 4 C 0.379 3.621 5 O -0.389 6.389 6 C -0.185 4.185 7 C -0.052 4.052 8 O -0.076 6.076 9 C -0.027 4.027 10 C 0.085 3.915 11 O -0.302 6.302 12 C -0.063 4.063 13 N -0.159 5.159 14 C -0.005 4.005 15 C -0.010 4.010 16 N -0.350 5.350 17 C -0.420 4.420 18 H 0.099 0.901 19 C -0.224 4.224 20 N -0.581 5.581 21 Si 0.908 3.092 22 H -0.225 1.225 23 H -0.222 1.222 24 H -0.215 1.215 25 C -0.049 4.049 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.113 0.887 30 H 0.090 0.910 31 H 0.250 0.750 32 H 0.099 0.901 33 H 0.115 0.885 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.111 0.889 37 H 0.134 0.866 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.097 0.903 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.260 -20.596 -20.246 30.649 hybrid contribution -1.541 0.605 -0.587 1.757 sum -11.801 -19.991 -20.833 31.192 Atomic orbital electron populations 1.22043 0.95731 1.01559 1.01890 1.21789 0.94948 0.81764 1.03167 1.47825 1.63535 1.14279 1.05838 1.16801 0.78742 0.84932 0.81642 1.90864 1.44392 1.17815 1.85876 1.21991 1.07020 0.93692 0.95774 1.25397 0.97829 0.94796 0.87225 1.84368 1.57675 1.26237 1.39369 1.25729 1.00119 0.91283 0.85586 1.20494 0.81683 0.88761 1.00562 1.87977 1.17057 1.40258 1.84927 1.22831 0.97112 0.88960 0.97432 1.71050 1.13865 1.14756 1.16256 1.23692 0.99204 0.93558 0.84094 1.22672 0.90956 0.90570 0.96832 1.45773 1.02330 1.41095 1.45766 1.20137 0.96077 1.09476 1.16270 0.90069 1.25682 0.96651 1.00986 0.99130 1.70926 1.35462 1.25725 1.26005 0.83653 0.75657 0.74284 0.75575 1.22502 1.22244 1.21466 1.23499 0.94287 0.89708 0.97359 0.92235 0.93210 0.92029 0.88672 0.91023 0.75007 0.90055 0.88478 0.93510 0.93309 0.88925 0.86552 0.94068 0.93133 0.93079 0.90280 0.93561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.63 37.16 0.36 -1.44 16 2 C 0.11 1.33 5.72 -4.04 -0.02 1.31 16 3 N -0.58 -9.52 2.77 -167.00 -0.46 -9.98 16 4 C 0.59 10.15 7.11 -12.52 -0.09 10.06 16 5 O -0.51 -10.58 12.43 5.27 0.07 -10.51 16 6 C -0.06 -0.89 6.43 -83.02 -0.53 -1.42 16 7 C 0.02 0.24 11.95 29.96 0.36 0.60 16 8 O -0.19 -2.02 10.73 6.54 0.07 -1.95 16 9 C 0.18 1.84 7.93 -13.08 -0.10 1.74 16 10 C 0.16 1.05 6.56 36.01 0.24 1.28 16 11 O -0.38 -3.09 10.69 -35.23 -0.38 -3.47 16 12 C 0.03 0.14 11.01 101.05 1.11 1.25 16 13 N -0.43 -5.13 6.24 -7.66 -0.05 -5.17 16 14 C 0.10 1.90 4.80 -67.68 -0.32 1.57 16 15 C 0.12 2.62 8.10 -8.50 -0.07 2.55 16 16 N -0.62 -16.77 3.69 -184.60 -0.68 -17.45 16 17 C -0.29 -9.02 11.09 -15.06 -0.17 -9.19 16 18 H 0.08 2.61 8.05 -52.49 -0.42 2.18 16 19 C -0.03 -0.83 5.50 -17.43 -0.10 -0.93 16 20 N -0.94 -30.90 13.70 55.49 0.76 -30.14 16 21 Si 1.07 28.77 25.10 -169.99 -4.27 24.50 16 22 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 23 H -0.29 -7.33 6.35 56.52 0.36 -6.97 16 24 H -0.29 -7.48 6.66 56.52 0.38 -7.11 16 25 C 0.08 1.83 5.29 -8.36 -0.04 1.79 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.81 6.54 -51.93 -0.34 0.47 16 29 H 0.10 1.14 5.66 -51.93 -0.29 0.85 16 30 H 0.07 0.80 7.90 -51.93 -0.41 0.39 16 31 H 0.23 2.06 8.06 -52.48 -0.42 1.63 16 32 H 0.08 0.32 8.14 -51.92 -0.42 -0.10 16 33 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.12 8.14 -51.92 -0.42 -0.30 16 35 H 0.05 0.14 8.14 -51.93 -0.42 -0.28 16 36 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.12 2.05 7.94 -51.93 -0.41 1.63 16 38 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.05 1.18 6.36 -51.93 -0.33 0.85 16 40 H 0.26 8.41 8.73 -40.82 -0.36 8.05 16 41 H 0.08 1.99 5.26 -51.93 -0.27 1.71 16 42 H 0.05 1.12 4.01 -51.93 -0.21 0.92 16 LS Contribution 340.22 15.07 5.13 5.13 Total: -1.00 -37.86 340.22 -4.91 -42.77 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -5.71 Total: -2.90 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: 0.61 Total: 9.18 kcal Atomic # 7 Polarization: -62.31 SS G_CDS: -0.43 Total: -62.74 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.24 Total: -15.93 kcal Atomic # 14 Polarization: 28.77 SS G_CDS: -4.27 Total: 24.50 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -37.86 -4.91 -42.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957056441.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.129 kcal (2) G-P(sol) polarization free energy of solvation -37.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds