Wall clock time and date at job start Fri Apr 10 2020 22:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46498 * 109.46906 * 2 1 4 4 C 1.34779 * 119.99564 * 274.80375 * 3 2 1 5 5 O 1.21612 * 120.00231 * 183.07296 * 4 3 2 6 6 C 1.47419 * 120.00220 * 3.07979 * 4 3 2 7 7 C 1.36090 * 126.45214 * 185.49823 * 6 4 3 8 8 O 1.34255 * 106.95128 * 179.97438 * 7 6 4 9 9 C 1.34040 * 108.22576 * 359.97438 * 8 7 6 10 10 C 1.50703 * 125.37837 * 179.97438 * 9 8 7 11 11 O 1.42895 * 109.47359 * 270.02956 * 10 9 8 12 12 C 1.42905 * 114.00443 * 179.97438 * 11 10 9 13 13 N 1.29935 * 109.24792 * 359.75053 * 9 8 7 14 14 C 1.46498 * 120.00588 * 94.80610 * 3 2 1 15 15 C 1.53496 * 114.20710 * 231.72441 * 14 3 2 16 16 N 1.47066 * 87.98397 * 220.14338 * 15 14 3 17 17 C 1.36930 * 136.05963 * 207.07914 * 16 15 14 18 18 H 1.07999 * 120.00023 * 354.71516 * 17 16 15 19 19 C 1.38812 * 120.00471 * 174.70598 * 17 16 15 20 20 N 1.31620 * 120.00723 * 183.81711 * 19 17 16 21 21 Si 1.86799 * 119.99637 * 3.81941 * 19 17 16 22 22 H 1.48498 * 109.47167 * 174.24983 * 21 19 17 23 23 H 1.48501 * 109.47329 * 294.25227 * 21 19 17 24 24 H 1.48500 * 109.47341 * 54.24973 * 21 19 17 25 25 C 1.47075 * 87.88406 * 27.34211 * 16 15 14 26 26 H 1.09005 * 109.47036 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47339 * 300.00209 * 1 2 3 28 28 H 1.08999 * 109.47197 * 60.00561 * 1 2 3 29 29 H 1.08996 * 109.47339 * 239.99791 * 2 1 3 30 30 H 1.08999 * 109.47197 * 119.99439 * 2 1 3 31 31 H 1.08004 * 126.52197 * 0.02562 * 7 6 4 32 32 H 1.09008 * 109.46966 * 30.02933 * 10 9 8 33 33 H 1.08994 * 109.47525 * 150.02452 * 10 9 8 34 34 H 1.09007 * 109.46711 * 300.00029 * 12 11 10 35 35 H 1.09000 * 109.46982 * 59.99568 * 12 11 10 36 36 H 1.08992 * 109.47263 * 179.97438 * 12 11 10 37 37 H 1.09005 * 113.27805 * 4.78872 * 14 3 2 38 38 H 1.09007 * 113.46717 * 105.36760 * 15 14 3 39 39 H 1.09000 * 113.46871 * 334.92361 * 15 14 3 40 40 H 0.97001 * 119.99418 * 5.00595 * 20 19 17 41 41 H 1.09004 * 113.46473 * 87.43792 * 25 16 15 42 42 H 1.09002 * 113.46703 * 217.87307 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1508 2.0491 -1.1632 5 8 2.6086 3.1757 -1.1688 6 6 1.7404 1.4140 -2.4287 7 6 1.9106 1.9208 -3.6802 8 8 1.3971 1.0252 -4.5384 9 6 0.9223 -0.0093 -3.8305 10 6 0.2612 -1.2332 -4.4104 11 8 -1.1470 -1.0118 -4.5102 12 6 -1.8723 -2.1176 -5.0519 13 7 1.1263 0.2075 -2.5657 14 6 2.3627 2.0365 1.2642 15 6 1.6942 3.4032 1.4672 16 7 2.9631 3.8812 2.0367 17 6 3.3401 4.8427 2.9357 18 1 2.6042 5.5214 3.3410 19 6 4.6682 4.9451 3.3265 20 7 5.0182 5.8191 4.2462 21 14 5.9587 3.8425 2.5467 22 1 7.3059 4.2398 3.0288 23 1 5.6953 2.4300 2.9222 24 1 5.9009 3.9809 1.0693 25 6 3.6494 2.8765 1.2105 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8900 31 1 2.3719 2.8637 -3.9345 32 1 0.6690 -1.4312 -5.4017 33 1 0.4494 -2.0892 -3.7625 34 1 -1.5086 -2.3335 -6.0565 35 1 -1.7284 -2.9922 -4.4176 36 1 -2.9330 -1.8705 -5.0943 37 1 2.2940 1.3728 2.1261 38 1 0.8756 3.3834 2.1868 39 1 1.4238 3.8972 0.5339 40 1 4.3396 6.3405 4.7029 41 1 3.8945 3.2317 0.2095 42 1 4.4967 2.4081 1.7114 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957056441.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:18:00 Heat of formation + Delta-G solvation = 14.377836 kcal Electronic energy + Delta-G solvation = -26213.745295 eV Core-core repulsion = 22391.678790 eV Total energy + Delta-G solvation = -3822.066505 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.56151 -41.71805 -39.05333 -38.85048 -37.01067 -35.73963 -34.50906 -32.49382 -31.40244 -29.63429 -28.68278 -27.08107 -26.62525 -26.16627 -24.38444 -23.79412 -22.68652 -21.66532 -20.59681 -19.63325 -18.58747 -18.25551 -17.80736 -17.51603 -17.01315 -16.96903 -16.61651 -16.53873 -16.41974 -15.52467 -15.47278 -15.15266 -14.95786 -14.57068 -14.39717 -13.86549 -13.82272 -13.49085 -13.26276 -13.25328 -13.03037 -12.74069 -12.61981 -12.52895 -12.33606 -12.16524 -11.82643 -11.53769 -11.44359 -11.13981 -11.03369 -10.85200 -10.74059 -10.24686 -9.60016 -9.17219 -8.67514 -5.50078 -0.01596 0.75215 1.33666 1.44588 1.46735 1.66676 1.77553 2.10061 2.50114 2.56544 3.03485 3.16382 3.23662 3.48753 3.55312 3.72337 4.07098 4.15125 4.17375 4.26807 4.37990 4.43346 4.51684 4.54492 4.56711 4.60236 4.65330 4.67109 4.69275 4.74425 4.82589 4.92626 4.95437 5.09940 5.15861 5.22011 5.51407 5.72657 5.90753 6.06607 6.24226 6.43634 6.66893 7.02635 7.28101 8.24095 8.87183 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.029913 B = 0.003354 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.820084 B = 8345.259526 C = 8700.525604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.105 3.895 3 N -0.583 5.583 4 C 0.590 3.410 5 O -0.558 6.558 6 C -0.092 4.092 7 C 0.036 3.964 8 O -0.189 6.189 9 C 0.188 3.812 10 C 0.160 3.840 11 O -0.416 6.416 12 C 0.028 3.972 13 N -0.436 5.436 14 C 0.132 3.868 15 C 0.115 3.885 16 N -0.650 5.650 17 C -0.288 4.288 18 H 0.051 0.949 19 C -0.082 4.082 20 N -0.968 5.968 21 Si 1.114 2.886 22 H -0.299 1.299 23 H -0.261 1.261 24 H -0.281 1.281 25 C 0.071 3.929 26 H 0.084 0.916 27 H 0.041 0.959 28 H 0.043 0.957 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.251 0.749 32 H 0.109 0.891 33 H 0.119 0.881 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.144 0.856 38 H 0.051 0.949 39 H 0.039 0.961 40 H 0.247 0.753 41 H 0.068 0.932 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.539 -24.613 -22.970 35.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.017 4.017 3 N -0.313 5.313 4 C 0.379 3.621 5 O -0.437 6.437 6 C -0.212 4.212 7 C -0.038 4.038 8 O -0.074 6.074 9 C -0.021 4.021 10 C 0.084 3.916 11 O -0.335 6.335 12 C -0.067 4.067 13 N -0.168 5.168 14 C 0.027 3.973 15 C -0.012 4.012 16 N -0.379 5.379 17 C -0.416 4.416 18 H 0.068 0.932 19 C -0.274 4.274 20 N -0.614 5.614 21 Si 0.941 3.059 22 H -0.227 1.227 23 H -0.187 1.187 24 H -0.208 1.208 25 C -0.054 4.054 26 H 0.103 0.897 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.122 0.878 30 H 0.111 0.889 31 H 0.267 0.733 32 H 0.127 0.873 33 H 0.136 0.864 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.112 0.888 37 H 0.162 0.838 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.085 0.915 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.937 -24.459 -22.325 34.875 hybrid contribution -1.529 1.775 -0.086 2.344 sum -12.466 -22.684 -22.411 34.238 Atomic orbital electron populations 1.21959 0.94984 1.02808 1.00592 1.22054 0.95439 0.79484 1.04675 1.47857 1.63338 1.15592 1.04519 1.17223 0.77720 0.84423 0.82778 1.90833 1.46411 1.19771 1.86704 1.21580 1.09471 0.95201 0.94911 1.25733 0.96360 0.95080 0.86640 1.84416 1.57521 1.26312 1.39156 1.26600 0.98771 0.91573 0.85146 1.20845 0.81127 0.87284 1.02392 1.87917 1.17815 1.42203 1.85560 1.23013 0.96874 0.88381 0.98473 1.70977 1.14389 1.14108 1.17354 1.23171 0.95078 0.92681 0.86357 1.22764 0.89963 0.92376 0.96072 1.45885 1.05182 1.40883 1.45906 1.20024 0.95578 1.09535 1.16415 0.93159 1.26997 0.99028 1.01970 0.99358 1.71016 1.35215 1.27346 1.27775 0.83180 0.73154 0.74513 0.75074 1.22724 1.18715 1.20791 1.23593 0.96261 0.89634 0.95952 0.89676 0.94003 0.93770 0.87751 0.88921 0.73291 0.87284 0.86362 0.91898 0.91955 0.88813 0.83819 0.93094 0.94324 0.94414 0.91468 0.93485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.63 71.98 0.69 -2.29 16 2 C 0.10 2.29 5.72 86.38 0.49 2.78 16 3 N -0.58 -17.88 2.77 -800.50 -2.21 -20.09 16 4 C 0.59 19.71 7.11 86.66 0.62 20.32 16 5 O -0.56 -23.13 12.43 -4.07 -0.05 -23.18 16 6 C -0.09 -2.41 6.43 40.41 0.26 -2.15 16 7 C 0.04 0.77 11.95 67.32 0.80 1.57 16 8 O -0.19 -3.54 10.73 0.50 0.01 -3.54 16 9 C 0.19 3.31 7.93 88.39 0.70 4.01 16 10 C 0.16 1.51 6.56 71.24 0.47 1.97 16 11 O -0.42 -5.56 10.69 -148.98 -1.59 -7.15 16 12 C 0.03 0.15 11.01 113.37 1.25 1.40 16 13 N -0.44 -9.45 6.24 -293.05 -1.83 -11.28 16 14 C 0.13 4.84 4.80 45.55 0.22 5.06 16 15 C 0.11 5.12 8.10 83.18 0.67 5.79 16 16 N -0.65 -35.22 3.69 -737.96 -2.72 -37.94 16 17 C -0.29 -18.18 11.09 84.03 0.93 -17.25 16 18 H 0.05 3.39 8.05 -2.91 -0.02 3.37 16 19 C -0.08 -5.23 5.50 84.86 0.47 -4.76 16 20 N -0.97 -65.54 13.70 21.65 0.30 -65.24 16 21 Si 1.11 58.09 25.10 68.60 1.72 59.81 16 22 H -0.30 -15.58 7.11 99.48 0.71 -14.87 16 23 H -0.26 -12.11 6.35 99.48 0.63 -11.48 16 24 H -0.28 -14.25 6.66 99.48 0.66 -13.59 16 25 C 0.07 3.29 5.29 83.27 0.44 3.73 16 26 H 0.08 1.31 8.14 -2.38 -0.02 1.30 16 27 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.04 1.07 6.54 -2.39 -0.02 1.06 16 29 H 0.10 2.17 5.66 -2.39 -0.01 2.15 16 30 H 0.09 1.67 7.90 -2.39 -0.02 1.65 16 31 H 0.25 4.10 8.06 -2.91 -0.02 4.08 16 32 H 0.11 0.42 8.14 -2.38 -0.02 0.40 16 33 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.06 0.13 8.14 -2.38 -0.02 0.11 16 35 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 36 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.14 4.54 7.94 -2.38 -0.02 4.52 16 38 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 39 H 0.04 1.84 6.36 -2.39 -0.02 1.82 16 40 H 0.25 16.71 8.73 -92.71 -0.81 15.90 16 41 H 0.07 3.37 5.26 -2.38 -0.01 3.35 16 42 H 0.05 2.18 4.01 -2.39 -0.01 2.17 16 Total: -1.00 -84.81 340.22 2.51 -82.30 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: 0.89 Total: 6.13 kcal Atomic # 6 Polarization: 12.17 SS G_CDS: 8.02 Total: 20.18 kcal Atomic # 7 Polarization: -128.09 SS G_CDS: -6.47 Total: -134.56 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -1.64 Total: -33.86 kcal Atomic # 14 Polarization: 58.09 SS G_CDS: 1.72 Total: 59.81 kcal Total: -84.81 2.51 -82.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957056441.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.674 kcal (2) G-P(sol) polarization free energy of solvation -84.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds