Wall clock time and date at job start Fri Apr 10 2020 22:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.45202 * 109.47298 * 2 1 4 4 C 1.34227 * 116.99965 * 179.97438 * 3 2 1 5 5 O 1.20819 * 120.00361 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.99564 * 179.97438 * 4 3 2 7 7 C 1.50703 * 109.46844 * 179.97438 * 6 4 3 8 8 C 1.38270 * 119.94028 * 265.02603 * 7 6 4 9 9 C 1.38095 * 120.09699 * 180.02562 * 8 7 6 10 10 C 1.38947 * 119.97612 * 359.97438 * 9 8 7 11 11 N 1.39670 * 120.05831 * 180.02562 * 10 9 8 12 12 C 1.46503 * 120.00053 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.47437 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.47432 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.47389 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99763 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99963 * 179.97438 * 15 14 13 18 18 N 1.31519 * 120.00092 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99992 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47306 * 59.99845 * 19 17 15 21 21 H 1.48502 * 109.47373 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47296 * 300.00114 * 19 17 15 23 23 C 1.38846 * 119.87742 * 359.72463 * 10 9 8 24 24 C 1.38344 * 119.90021 * 0.52912 * 23 10 9 25 25 F 1.35104 * 119.98639 * 179.76651 * 24 23 10 26 26 H 1.09002 * 109.47674 * 300.00536 * 1 2 3 27 27 H 1.09008 * 109.47363 * 60.00082 * 1 2 3 28 28 H 1.09002 * 109.47371 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47400 * 240.00189 * 2 1 3 30 30 H 1.09000 * 109.47247 * 120.00182 * 2 1 3 31 31 H 1.08995 * 109.47021 * 60.00329 * 6 4 3 32 32 H 1.09001 * 109.47387 * 299.99663 * 6 4 3 33 33 H 1.07999 * 119.95186 * 0.02562 * 8 7 6 34 34 H 1.08006 * 120.01154 * 180.02562 * 9 8 7 35 35 H 0.96997 * 120.00460 * 359.97438 * 11 10 9 36 36 H 1.09002 * 109.46920 * 300.00207 * 12 11 10 37 37 H 1.09007 * 109.47197 * 59.99737 * 12 11 10 38 38 H 1.09002 * 109.47310 * 300.00061 * 13 12 11 39 39 H 1.08999 * 109.47223 * 59.99472 * 13 12 11 40 40 H 1.09002 * 109.46848 * 300.00253 * 14 13 12 41 41 H 1.09007 * 109.47274 * 59.99785 * 14 13 12 42 42 H 0.97002 * 119.99996 * 180.02562 * 18 17 15 43 43 H 1.08002 * 120.04565 * 180.27290 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9206 2.9374 0.0000 7 6 5.4256 2.8585 0.0014 8 6 6.1191 2.9271 1.1956 9 6 7.4982 2.8556 1.2006 10 6 8.1904 2.7142 0.0042 11 7 9.5852 2.6412 0.0073 12 6 10.3137 2.4915 -1.2549 13 6 11.8166 2.4381 -0.9732 14 6 12.5774 2.2824 -2.2914 15 6 14.0578 2.2305 -2.0140 16 1 14.4197 2.3010 -0.9989 17 6 14.9500 2.0918 -3.0559 18 7 14.5092 2.0054 -4.2920 19 14 16.7848 2.0267 -2.7120 20 1 17.0822 0.8706 -1.8288 21 1 17.5233 1.8757 -3.9915 22 1 17.2078 3.2828 -2.0422 23 6 7.4926 2.6392 -1.1939 24 6 6.1114 2.7165 -1.1935 25 9 5.4309 2.6485 -2.3587 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.5843 3.4700 0.8895 32 1 3.5852 3.4690 -0.8905 33 1 5.5815 3.0366 2.1259 34 1 8.0385 2.9089 2.1343 35 1 10.0716 2.6897 0.8451 36 1 10.0029 1.5697 -1.7467 37 1 10.0958 3.3404 -1.9031 38 1 12.1271 3.3601 -0.4817 39 1 12.0348 1.5896 -0.3248 40 1 12.2670 1.3606 -2.7834 41 1 12.3591 3.1313 -2.9395 42 1 15.1369 1.9075 -5.0251 43 1 8.0277 2.5248 -2.1250 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168433716.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:17:43 Heat of formation + Delta-G solvation = -147.138948 kcal Electronic energy + Delta-G solvation = -24094.993331 eV Core-core repulsion = 20246.002971 eV Total energy + Delta-G solvation = -3848.990360 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.96483 -41.55473 -40.32244 -37.93372 -37.30550 -35.59179 -33.92083 -32.80363 -31.97268 -31.52037 -29.02787 -27.29091 -25.18749 -24.28779 -23.58951 -22.71852 -22.00839 -21.62215 -18.87995 -18.77665 -18.57495 -17.88267 -17.47314 -17.26395 -16.73034 -16.58390 -16.43480 -16.28039 -16.03914 -15.61643 -15.24155 -14.67980 -14.38403 -14.36674 -14.21982 -14.00557 -13.71392 -13.60710 -13.26669 -13.17448 -12.82957 -12.72148 -12.62218 -12.57212 -12.48276 -12.38589 -12.11243 -11.76826 -11.56851 -11.52364 -11.47730 -11.22385 -10.85354 -10.56886 -9.78538 -8.43630 -8.21832 -6.33357 0.26778 0.39589 1.20162 1.39910 1.42744 1.50716 1.76029 2.34746 2.44151 2.75142 3.11763 3.32915 3.59648 3.78097 3.93624 3.99984 4.09725 4.10839 4.14700 4.19052 4.29558 4.35370 4.51156 4.52916 4.59366 4.68776 4.85748 4.92133 4.93129 4.98775 5.04232 5.12234 5.14229 5.16732 5.28297 5.41986 5.47622 5.48073 5.68154 5.81368 5.82677 6.17902 6.27613 6.75486 6.79938 6.84070 7.36197 8.89823 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.031546 B = 0.001997 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.376051 B =14018.049216 C =14326.145432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.052 3.948 3 O -0.360 6.360 4 C 0.460 3.540 5 O -0.538 6.538 6 C -0.057 4.057 7 C -0.186 4.186 8 C -0.023 4.023 9 C -0.204 4.204 10 C 0.241 3.759 11 N -0.732 5.732 12 C 0.132 3.868 13 C -0.103 4.103 14 C 0.024 3.976 15 C -0.545 4.545 16 H 0.064 0.936 17 C -0.002 4.002 18 N -0.933 5.933 19 Si 0.967 3.033 20 H -0.267 1.267 21 H -0.285 1.285 22 H -0.265 1.265 23 C -0.260 4.260 24 C 0.142 3.858 25 F -0.149 7.149 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.096 0.904 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.156 0.844 32 H 0.123 0.877 33 H 0.168 0.832 34 H 0.154 0.846 35 H 0.412 0.588 36 H 0.047 0.953 37 H 0.053 0.947 38 H 0.064 0.936 39 H 0.061 0.939 40 H -0.008 1.008 41 H -0.005 1.005 42 H 0.264 0.736 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.916 2.090 14.217 31.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.021 4.021 3 O -0.277 6.277 4 C 0.304 3.696 5 O -0.427 6.427 6 C -0.094 4.094 7 C -0.189 4.189 8 C -0.042 4.042 9 C -0.227 4.227 10 C 0.135 3.865 11 N -0.360 5.360 12 C 0.008 3.992 13 C -0.141 4.141 14 C -0.013 4.013 15 C -0.583 4.583 16 H 0.082 0.918 17 C -0.200 4.200 18 N -0.573 5.573 19 Si 0.791 3.209 20 H -0.192 1.192 21 H -0.210 1.210 22 H -0.190 1.190 23 C -0.284 4.284 24 C 0.122 3.878 25 F -0.128 7.128 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.115 0.885 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.174 0.826 32 H 0.141 0.859 33 H 0.185 0.815 34 H 0.171 0.829 35 H 0.249 0.751 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.011 0.989 41 H 0.013 0.987 42 H 0.072 0.928 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -27.585 1.728 13.799 30.892 hybrid contribution 1.386 -0.525 -0.760 1.665 sum -26.199 1.203 13.038 29.289 Atomic orbital electron populations 1.21816 0.90225 1.04289 1.03878 1.23249 0.97187 0.79497 1.02210 1.86501 1.24011 1.33386 1.83839 1.24292 0.80510 0.93410 0.71376 1.90693 1.61211 1.44480 1.46354 1.20205 0.89969 0.90151 1.09029 1.19204 0.94888 1.12655 0.92140 1.20965 0.93134 0.92881 0.97189 1.20934 0.94795 1.10335 0.96614 1.17784 0.84019 0.91277 0.93438 1.44802 1.02349 1.79518 1.09302 1.21284 0.91886 1.00021 0.86031 1.21560 0.91967 1.01645 0.98886 1.18938 0.94392 0.95082 0.92915 1.21654 0.92864 1.50151 0.93599 0.91814 1.26009 1.04405 0.94739 0.94844 1.70096 1.36514 1.50985 0.99731 0.85477 0.78746 0.79203 0.77479 1.19171 1.21009 1.19028 1.20576 0.92964 1.15975 0.98911 1.17419 0.89387 0.99812 0.81200 1.91433 1.80105 1.93657 1.47621 0.90770 0.91339 0.88506 0.92249 0.91315 0.82601 0.85921 0.81460 0.82867 0.75114 0.93430 0.92892 0.91721 0.92024 0.98932 0.98691 0.92774 0.86221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.29 71.98 0.74 -0.53 16 2 C 0.05 0.80 6.19 71.98 0.45 1.25 16 3 O -0.36 -6.63 10.22 -51.39 -0.53 -7.15 16 4 C 0.46 9.88 7.95 71.24 0.57 10.44 16 5 O -0.54 -15.90 15.78 21.98 0.35 -15.55 16 6 C -0.06 -0.88 5.71 29.10 0.17 -0.71 16 7 C -0.19 -4.02 4.38 -19.79 -0.09 -4.10 16 8 C -0.02 -0.41 9.67 22.24 0.22 -0.20 16 9 C -0.20 -4.17 9.89 22.41 0.22 -3.95 16 10 C 0.24 6.45 6.65 38.21 0.25 6.71 16 11 N -0.73 -19.94 5.73 -339.43 -1.95 -21.88 16 12 C 0.13 4.45 4.91 86.38 0.42 4.88 16 13 C -0.10 -3.98 5.27 30.59 0.16 -3.82 16 14 C 0.02 1.27 4.97 29.85 0.15 1.42 16 15 C -0.54 -30.63 9.11 25.60 0.23 -30.40 16 16 H 0.06 3.39 7.74 -2.91 -0.02 3.36 16 17 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 18 N -0.93 -56.94 13.29 21.45 0.28 -56.66 16 19 Si 0.97 43.99 29.54 68.60 2.03 46.02 16 20 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 21 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 22 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 23 C -0.26 -7.83 9.29 22.44 0.21 -7.62 16 24 C 0.14 3.97 7.24 22.36 0.16 4.14 16 25 F -0.15 -4.43 16.56 44.97 0.74 -3.69 16 26 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 28 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.06 1.02 8.14 -2.38 -0.02 1.01 16 30 H 0.07 1.06 8.13 -2.39 -0.02 1.04 16 31 H 0.16 1.12 8.05 -2.39 -0.02 1.11 16 32 H 0.12 1.68 7.79 -2.39 -0.02 1.66 16 33 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 34 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 35 H 0.41 9.37 8.49 -92.71 -0.79 8.58 16 36 H 0.05 1.70 7.94 -2.39 -0.02 1.68 16 37 H 0.05 1.84 7.96 -2.38 -0.02 1.82 16 38 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 40 H -0.01 -0.44 8.14 -2.39 -0.02 -0.45 16 41 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 42 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 43 H 0.12 3.87 6.73 -2.91 -0.02 3.85 16 Total: -1.00 -72.49 371.81 5.48 -67.02 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.22 Total: 14.07 kcal Atomic # 6 Polarization: -26.49 SS G_CDS: 4.32 Total: -22.17 kcal Atomic # 7 Polarization: -76.88 SS G_CDS: -1.66 Total: -78.54 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.18 Total: -22.70 kcal Atomic # 9 Polarization: -4.43 SS G_CDS: 0.74 Total: -3.69 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -72.49 5.48 -67.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168433716.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.124 kcal (2) G-P(sol) polarization free energy of solvation -72.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds