Wall clock time and date at job start Fri Apr 10 2020 22:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38254 * 120.00343 * 2 1 4 4 C 1.38211 * 120.00331 * 179.97438 * 3 2 1 5 5 C 1.38265 * 119.99708 * 359.80815 * 4 3 2 6 6 C 1.38212 * 119.99966 * 0.42213 * 5 4 3 7 7 C 1.50694 * 120.00149 * 179.80838 * 6 5 4 8 8 S 1.81395 * 109.47277 * 269.72702 * 7 6 5 9 9 C 1.81403 * 103.00164 * 179.97438 * 8 7 6 10 10 C 1.52996 * 109.47003 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.47555 * 304.99656 * 10 9 8 12 12 O 1.42901 * 109.47612 * 65.00179 * 10 9 8 13 13 C 1.53000 * 109.47000 * 185.00166 * 10 9 8 14 14 N 1.46905 * 109.47114 * 180.02562 * 13 10 9 15 15 C 1.46900 * 110.99850 * 293.94896 * 14 13 10 16 16 C 1.46906 * 111.00051 * 169.99929 * 14 13 10 17 17 C 1.50699 * 109.47140 * 189.99841 * 16 14 13 18 18 H 1.08003 * 119.99962 * 359.97438 * 17 16 14 19 19 C 1.37873 * 119.99861 * 180.02562 * 17 16 14 20 20 N 1.31522 * 120.00244 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99980 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46950 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47074 * 119.99839 * 21 19 17 24 24 H 1.48505 * 109.46997 * 239.99833 * 21 19 17 25 25 C 1.38212 * 119.99895 * 179.97438 * 2 1 3 26 26 H 1.09001 * 109.47304 * 270.02725 * 1 2 3 27 27 H 1.09005 * 109.46795 * 30.02275 * 1 2 3 28 28 H 1.08992 * 109.47156 * 150.02375 * 1 2 3 29 29 H 1.08008 * 120.00253 * 359.97438 * 3 2 1 30 30 H 1.07995 * 120.00355 * 180.02562 * 4 3 2 31 31 H 1.07993 * 119.99946 * 180.22819 * 5 4 3 32 32 H 1.09003 * 109.47421 * 149.72521 * 7 6 5 33 33 H 1.09002 * 109.47261 * 29.72757 * 7 6 5 34 34 H 1.08995 * 109.47002 * 60.00223 * 9 8 7 35 35 H 1.08998 * 109.47031 * 299.99663 * 9 8 7 36 36 H 0.96697 * 113.99735 * 59.99435 * 12 10 9 37 37 H 1.08997 * 109.47704 * 60.00204 * 13 10 9 38 38 H 1.09000 * 109.47058 * 299.99530 * 13 10 9 39 39 H 1.08996 * 109.47030 * 296.04770 * 15 14 13 40 40 H 1.08999 * 109.46702 * 56.04909 * 15 14 13 41 41 H 1.08996 * 109.46890 * 176.04778 * 15 14 13 42 42 H 1.09004 * 109.47040 * 309.99779 * 16 14 13 43 43 H 1.09000 * 109.47033 * 69.99731 * 16 14 13 44 44 H 0.96992 * 120.00038 * 179.97438 * 20 19 17 45 45 H 1.08006 * 119.99719 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0002 0.0051 6 6 3.5806 -1.1971 0.0003 7 6 4.3340 -2.5022 0.0009 8 16 4.6359 -3.0269 -1.7091 9 6 5.5378 -4.5874 -1.5039 10 6 5.8715 -5.1682 -2.8795 11 1 4.9566 -5.2686 -3.4633 12 8 6.7764 -4.2951 -3.5585 13 6 6.5208 -6.5430 -2.7087 14 7 6.8419 -7.1004 -4.0295 15 6 5.6190 -7.3838 -4.7926 16 6 7.6753 -8.3037 -3.9047 17 6 8.1862 -8.7042 -5.2647 18 1 7.9182 -8.1232 -6.1348 19 6 8.9948 -9.8129 -5.3983 20 7 9.3207 -10.5207 -4.3387 21 14 9.6287 -10.3089 -7.0840 22 1 9.1223 -9.3553 -8.1035 23 1 11.1136 -10.2880 -7.0803 24 1 9.1537 -11.6781 -7.4082 25 6 2.1981 -1.1970 0.0005 26 1 -0.3634 0.0005 1.0277 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8901 -0.5134 29 1 1.6584 2.1327 -0.0004 30 1 4.1205 2.1325 0.0010 31 1 5.3517 -0.0002 0.0092 32 1 3.7451 -3.2615 0.5153 33 1 5.2866 -2.3716 0.5144 34 1 4.9190 -5.2947 -0.9518 35 1 6.4602 -4.4042 -0.9530 36 1 7.6142 -4.1594 -3.0951 37 1 5.8307 -7.2091 -2.1909 38 1 7.4359 -6.4427 -2.1250 39 1 5.0435 -8.1563 -4.2827 40 1 5.0205 -6.4762 -4.8699 41 1 5.8860 -7.7293 -5.7913 42 1 8.5188 -8.0948 -3.2467 43 1 7.0806 -9.1158 -3.4863 44 1 9.8893 -11.3008 -4.4328 45 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414141663.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:18:04 Heat of formation + Delta-G solvation = -34.069485 kcal Electronic energy + Delta-G solvation = -21942.590248 eV Core-core repulsion = 18664.716124 eV Total energy + Delta-G solvation = -3277.874124 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 309.150 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.69948 -38.02653 -35.48310 -33.87921 -32.53906 -32.27957 -31.04285 -27.88767 -27.42675 -26.99996 -26.55751 -24.15289 -22.45155 -21.59879 -20.89522 -20.23616 -17.01723 -16.63030 -16.23343 -16.04288 -15.78232 -15.47429 -15.20154 -14.92104 -14.55584 -14.28685 -13.99925 -13.89189 -13.65791 -13.46370 -13.23539 -12.97192 -12.70327 -12.47259 -12.26623 -12.01744 -11.90431 -11.43784 -11.34278 -11.28890 -11.21935 -10.90682 -10.82140 -10.66327 -10.42449 -10.05467 -10.02165 -9.65481 -9.14606 -9.04859 -8.83409 -8.44166 -7.71016 -7.22032 -6.03150 -4.03981 0.75662 1.09894 1.76282 2.49152 3.31673 3.38976 3.44962 3.52724 4.29543 4.39199 4.41925 4.54579 4.58140 4.68033 4.81488 4.84956 4.99108 5.00615 5.18109 5.21436 5.21818 5.26105 5.33192 5.36049 5.41966 5.48956 5.53199 5.59264 5.73845 5.82379 6.00876 6.16136 6.17120 6.25196 6.26576 6.29448 6.36768 6.69869 6.77125 7.24917 7.31080 7.79844 7.96745 8.09030 8.18732 8.54073 9.04479 9.60392 11.07882 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.039683 B = 0.001983 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.421604 B =14115.211744 C =14227.499688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.088 4.088 3 C -0.119 4.119 4 C -0.116 4.116 5 C -0.107 4.107 6 C -0.065 4.065 7 C -0.058 4.058 8 S -0.222 6.222 9 C -0.127 4.127 10 C 0.130 3.870 11 H 0.103 0.897 12 O -0.535 6.535 13 C 0.029 3.971 14 N -0.529 5.529 15 C 0.036 3.964 16 C 0.193 3.807 17 C -0.504 4.504 18 H 0.065 0.935 19 C 0.053 3.947 20 N -0.901 5.901 21 Si 0.899 3.101 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.285 1.285 25 C -0.103 4.103 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.370 0.630 37 H 0.030 0.970 38 H 0.071 0.929 39 H 0.010 0.990 40 H 0.047 0.953 41 H 0.074 0.926 42 H 0.028 0.972 43 H -0.010 1.010 44 H 0.260 0.740 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.781 21.115 13.154 28.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.088 4.088 3 C -0.138 4.138 4 C -0.134 4.134 5 C -0.127 4.127 6 C -0.067 4.067 7 C -0.205 4.205 8 S 0.009 5.991 9 C -0.276 4.276 10 C 0.069 3.931 11 H 0.120 0.880 12 O -0.339 6.339 13 C -0.102 4.102 14 N -0.253 5.253 15 C -0.112 4.112 16 C 0.068 3.932 17 C -0.543 4.543 18 H 0.083 0.917 19 C -0.148 4.148 20 N -0.541 5.541 21 Si 0.727 3.273 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.212 1.212 25 C -0.122 4.122 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.142 0.858 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.217 0.783 37 H 0.048 0.952 38 H 0.090 0.910 39 H 0.028 0.972 40 H 0.065 0.935 41 H 0.093 0.907 42 H 0.046 0.954 43 H 0.007 0.993 44 H 0.070 0.930 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.163 21.788 11.558 28.952 hybrid contribution 0.815 -1.790 1.329 2.374 sum -14.348 19.998 12.887 27.782 Atomic orbital electron populations 1.20796 0.91067 1.02967 1.02297 1.19901 0.96164 0.93015 0.99693 1.21066 0.94322 0.97514 1.00872 1.21118 0.94286 0.97949 1.00050 1.21042 1.00068 0.91761 0.99792 1.19195 0.93488 0.93207 1.00764 1.22329 1.02908 0.97621 0.97680 1.87437 1.74042 1.28472 1.09196 1.24343 1.02675 0.97123 1.03440 1.21630 0.93835 0.88605 0.89042 0.87977 1.86634 1.29692 1.67051 1.50536 1.22709 0.99497 0.94522 0.93461 1.62025 1.17018 1.33324 1.12933 1.22254 0.91238 0.97793 0.99933 1.19763 0.91379 0.84248 0.97860 1.21210 1.29420 1.10143 0.93503 0.91685 1.25005 0.96391 0.96392 0.96996 1.69970 1.37272 1.18108 1.28706 0.86426 0.78563 0.78222 0.84138 1.19582 1.21013 1.21151 1.20921 0.93224 0.97882 1.00217 0.91198 0.91493 0.91378 0.86097 0.85853 0.85811 0.89450 0.89310 0.89449 0.89798 0.78315 0.95219 0.91031 0.97175 0.93451 0.90702 0.95354 0.99253 0.93019 0.85890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 10.01 36.01 0.36 -0.33 16 2 C -0.09 -0.73 5.88 -104.62 -0.62 -1.35 16 3 C -0.12 -0.95 9.70 -39.59 -0.38 -1.33 16 4 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 5 C -0.11 -0.98 9.70 -39.58 -0.38 -1.36 16 6 C -0.07 -0.63 5.14 -104.63 -0.54 -1.17 16 7 C -0.06 -0.54 6.07 36.00 0.22 -0.32 16 8 S -0.22 -2.68 21.50 -107.50 -2.31 -5.00 16 9 C -0.13 -1.46 5.60 37.16 0.21 -1.25 16 10 C 0.13 1.90 2.84 -26.73 -0.08 1.83 16 11 H 0.10 1.60 6.47 -51.93 -0.34 1.27 16 12 O -0.54 -8.59 12.96 -35.23 -0.46 -9.04 16 13 C 0.03 0.50 4.62 -3.82 -0.02 0.48 16 14 N -0.53 -11.49 4.62 -244.36 -1.13 -12.62 16 15 C 0.04 0.73 9.16 60.06 0.55 1.28 16 16 C 0.19 5.04 4.72 -4.97 -0.02 5.01 16 17 C -0.50 -14.34 8.52 -34.44 -0.29 -14.63 16 18 H 0.06 1.85 7.10 -52.48 -0.37 1.48 16 19 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 20 N -0.90 -26.87 13.29 55.43 0.74 -26.14 16 21 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 25 C -0.10 -0.95 9.36 -39.58 -0.37 -1.32 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 28 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 29 H 0.12 0.72 8.06 -52.48 -0.42 0.29 16 30 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 31 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.09 0.72 8.09 -51.92 -0.42 0.30 16 33 H 0.09 0.73 8.08 -51.92 -0.42 0.31 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.37 4.84 9.04 45.56 0.41 5.26 16 37 H 0.03 0.50 8.12 -51.93 -0.42 0.07 16 38 H 0.07 1.19 7.93 -51.93 -0.41 0.78 16 39 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.05 0.84 6.30 -51.93 -0.33 0.51 16 41 H 0.07 1.61 6.86 -51.93 -0.36 1.25 16 42 H 0.03 0.78 7.93 -51.93 -0.41 0.37 16 43 H -0.01 -0.29 8.12 -51.93 -0.42 -0.71 16 44 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 LS Contribution 383.38 15.07 5.78 5.78 Total: -1.00 -32.26 383.38 -11.11 -43.37 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -6.84 Total: 1.18 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -1.86 Total: -14.38 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: -0.39 Total: -38.76 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -0.46 Total: -9.04 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: -2.68 SS G_CDS: -2.31 Total: -5.00 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.26 -11.11 -43.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414141663.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.296 kcal (2) G-P(sol) polarization free energy of solvation -32.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds