Wall clock time and date at job start Fri Apr 10 2020 22:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46489 * 2 1 4 4 C 1.50700 * 109.47122 * 240.00357 * 2 1 3 5 5 N 1.31262 * 120.05674 * 284.99931 * 4 2 1 6 6 C 1.32577 * 122.77923 * 179.97438 * 5 4 2 7 7 C 1.36214 * 121.87238 * 359.97438 * 6 5 4 8 8 C 1.40650 * 118.66370 * 0.02562 * 7 6 5 9 9 C 1.40237 * 122.22716 * 180.02562 * 8 7 6 10 10 C 1.36219 * 119.47884 * 179.97438 * 9 8 7 11 11 C 1.39380 * 121.02484 * 0.02562 * 10 9 8 12 12 C 1.36163 * 121.09056 * 0.02562 * 11 10 9 13 13 C 1.40383 * 119.51475 * 359.97338 * 12 11 10 14 14 N 1.46895 * 109.47161 * 119.99892 * 2 1 3 15 15 C 1.46906 * 111.00263 * 300.00461 * 14 2 1 16 16 C 1.50697 * 109.47127 * 171.64571 * 15 14 2 17 17 H 1.08001 * 120.00344 * 354.93944 * 16 15 14 18 18 C 1.37878 * 119.99997 * 174.94197 * 16 15 14 19 19 N 1.31515 * 119.99933 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00065 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47070 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46600 * 120.00050 * 20 18 16 23 23 H 1.48498 * 109.47534 * 240.00053 * 20 18 16 24 24 C 1.46893 * 111.00178 * 176.04610 * 14 2 1 25 25 C 1.53002 * 109.47041 * 61.43619 * 24 14 2 26 26 C 1.47200 * 109.47493 * 182.56044 * 25 24 14 27 27 N 5.28598 * 167.58583 * 67.81111 * 2 1 3 28 28 H 1.09004 * 109.47611 * 300.00102 * 1 2 3 29 29 H 1.08998 * 109.47241 * 60.00097 * 1 2 3 30 30 H 1.09000 * 109.47216 * 180.02562 * 1 2 3 31 31 H 1.07994 * 119.06523 * 180.02562 * 6 5 4 32 32 H 1.07995 * 120.66612 * 180.02562 * 7 6 5 33 33 H 1.07998 * 120.26421 * 359.97373 * 9 8 7 34 34 H 1.08004 * 119.48724 * 179.97438 * 10 9 8 35 35 H 1.07994 * 119.45141 * 179.97438 * 11 10 9 36 36 H 1.07997 * 120.24220 * 179.97438 * 12 11 10 37 37 H 1.08997 * 109.46666 * 291.64609 * 15 14 2 38 38 H 1.08996 * 109.47236 * 51.64067 * 15 14 2 39 39 H 0.97002 * 119.99888 * 180.02562 * 19 18 16 40 40 H 1.09002 * 109.47641 * 181.43535 * 24 14 2 41 41 H 1.09005 * 109.47467 * 301.43451 * 24 14 2 42 42 H 1.09005 * 109.46875 * 302.55632 * 25 24 14 43 43 H 1.08996 * 109.47179 * 62.55862 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 7 1.9743 -2.0196 -1.3036 6 6 2.3999 -2.6992 -2.3594 7 6 2.9303 -2.0773 -3.4490 8 6 3.0258 -0.6740 -3.4450 9 6 3.5585 0.0424 -4.5264 10 6 3.6239 1.4015 -4.4631 11 6 3.1700 2.0910 -3.3400 12 6 2.6479 1.4281 -2.2714 13 6 2.5642 0.0270 -2.3002 14 7 2.0197 -0.6924 1.1994 15 6 1.5486 -0.0264 2.4211 16 6 1.8939 -0.8723 3.6195 17 1 2.3377 -1.8474 3.4825 18 6 1.6434 -0.4015 4.8909 19 7 1.1025 0.7856 5.0579 20 14 2.0708 -1.4504 6.3764 21 1 2.6634 -2.7340 5.9220 22 1 3.0498 -0.7275 7.2275 23 1 0.8397 -1.7231 7.1607 24 6 3.4850 -0.7945 1.1870 25 6 4.0940 0.6091 1.1840 26 6 5.5606 0.5076 1.1096 27 7 6.6924 0.4292 1.0522 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 2.3231 -3.7764 -2.3558 32 1 3.2706 -2.6502 -4.2989 33 1 3.9142 -0.4793 -5.4026 34 1 4.0346 1.9534 -5.2957 35 1 3.2344 3.1688 -3.3167 36 1 2.3007 1.9761 -1.4080 37 1 2.0299 0.9472 2.5127 38 1 0.4679 0.1061 2.3691 39 1 0.9266 1.1170 5.9524 40 1 3.8193 -1.3336 2.0735 41 1 3.8044 -1.3311 0.2936 42 1 3.7240 1.1638 0.3216 43 1 3.8117 1.1296 2.0991 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001462024946.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:17:49 Heat of formation + Delta-G solvation = 90.921946 kcal Electronic energy + Delta-G solvation = -25430.146813 eV Core-core repulsion = 22054.541525 eV Total energy + Delta-G solvation = -3375.605289 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 309.154 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.02022 -38.23202 -37.15942 -36.05306 -33.61631 -32.48617 -31.55324 -31.12516 -29.68299 -28.70819 -26.73112 -24.46749 -23.67446 -23.42451 -23.08203 -21.23967 -19.29110 -17.86712 -17.54829 -17.14477 -16.48062 -16.07481 -15.39527 -14.91904 -14.86335 -14.55829 -14.20416 -14.15986 -13.88338 -13.68849 -13.42071 -13.34764 -12.84734 -12.49162 -12.19143 -12.03495 -11.98703 -11.86700 -11.80843 -11.55980 -11.42471 -11.18662 -11.11179 -10.87178 -10.70559 -10.34541 -10.17602 -10.04195 -9.90536 -9.24255 -9.10798 -9.08166 -8.45998 -8.01674 -7.31976 -6.07033 -4.07215 0.36175 0.91247 1.90095 3.07200 3.09577 3.12808 3.30686 3.39286 3.44225 4.08652 4.28122 4.33622 4.43898 4.49377 4.59098 4.75753 4.80470 5.00217 5.10817 5.12247 5.29247 5.30611 5.36460 5.45961 5.50269 5.65529 5.70640 5.74242 5.83712 5.86075 5.95762 6.03083 6.06466 6.27761 6.31546 6.34523 6.39661 6.60802 6.65443 6.72114 6.80875 7.19088 7.22847 7.75563 7.87343 8.00494 8.08355 8.25038 8.46958 9.01257 9.57639 11.03386 Molecular weight = 309.15amu Principal moments of inertia in cm(-1) A = 0.016590 B = 0.004278 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.363496 B = 6544.107990 C = 6949.167709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.121 3.879 3 H 0.053 0.947 4 C 0.194 3.806 5 N -0.454 5.454 6 C 0.086 3.914 7 C -0.175 4.175 8 C -0.022 4.022 9 C -0.117 4.117 10 C -0.100 4.100 11 C -0.127 4.127 12 C -0.085 4.085 13 C -0.109 4.109 14 N -0.504 5.504 15 C 0.182 3.818 16 C -0.506 4.506 17 H 0.066 0.934 18 C 0.058 3.942 19 N -0.897 5.897 20 Si 0.893 3.107 21 H -0.272 1.272 22 H -0.286 1.286 23 H -0.284 1.284 24 C 0.076 3.924 25 C -0.075 4.075 26 C 0.225 3.775 27 N -0.461 5.461 28 H 0.075 0.925 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.151 0.849 32 H 0.132 0.868 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.136 0.864 37 H 0.002 0.998 38 H 0.040 0.960 39 H 0.261 0.739 40 H 0.095 0.905 41 H 0.059 0.941 42 H 0.094 0.906 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.819 1.447 -18.661 18.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.012 3.988 3 H 0.071 0.929 4 C 0.042 3.958 5 N -0.162 5.162 6 C -0.058 4.058 7 C -0.195 4.195 8 C -0.027 4.027 9 C -0.135 4.135 10 C -0.120 4.120 11 C -0.145 4.145 12 C -0.105 4.105 13 C -0.112 4.112 14 N -0.227 5.227 15 C 0.057 3.943 16 C -0.544 4.544 17 H 0.084 0.916 18 C -0.143 4.143 19 N -0.537 5.537 20 Si 0.721 3.279 21 H -0.196 1.196 22 H -0.212 1.212 23 H -0.210 1.210 24 C -0.055 4.055 25 C -0.117 4.117 26 C -0.093 4.093 27 N -0.138 5.138 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.168 0.832 32 H 0.150 0.850 33 H 0.145 0.855 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.153 0.847 37 H 0.020 0.980 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.113 0.887 41 H 0.077 0.923 42 H 0.112 0.888 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.901 0.349 -17.972 18.076 hybrid contribution 0.522 0.822 0.087 0.978 sum 2.423 1.171 -17.885 18.087 Atomic orbital electron populations 1.21844 0.92756 1.03454 1.01649 1.20629 0.96544 0.94013 0.87663 0.92932 1.21738 0.91050 0.89554 0.93479 1.67391 1.15066 1.08656 1.25047 1.22320 0.94360 1.00417 0.88677 1.21846 1.03321 0.93604 1.00751 1.18139 0.97070 0.93729 0.93793 1.20926 1.00329 0.94412 0.97802 1.20953 0.98493 0.94425 0.98089 1.20902 0.99492 1.00328 0.93753 1.21180 0.97601 0.92819 0.98882 1.18904 1.01990 0.94779 0.95496 1.62386 1.06922 1.51705 1.01668 1.19982 0.96542 0.92929 0.84809 1.21169 1.40580 1.02989 0.89695 0.91628 1.24927 0.95346 0.95054 0.98971 1.69943 1.43789 1.17611 1.22368 0.86517 0.78040 0.80628 0.82738 1.19614 1.21225 1.21050 1.22043 0.88453 0.92053 1.02933 1.20303 0.81659 1.04186 1.05596 1.29266 0.95239 0.92523 0.92254 1.81124 1.13117 1.09605 1.10004 0.90585 0.93339 0.91089 0.83219 0.85006 0.85486 0.85896 0.85684 0.84654 0.97985 0.94222 0.92979 0.88679 0.92299 0.88824 0.85823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 8.96 37.16 0.33 -1.80 16 2 C 0.12 1.90 1.73 -68.87 -0.12 1.78 16 3 H 0.05 0.75 4.20 -51.93 -0.22 0.54 16 4 C 0.19 2.93 4.24 -82.03 -0.35 2.58 16 5 N -0.45 -7.22 9.59 -9.39 -0.09 -7.31 16 6 C 0.09 1.12 11.07 -17.96 -0.20 0.93 16 7 C -0.18 -2.02 9.88 -39.40 -0.39 -2.41 16 8 C -0.02 -0.28 5.75 -106.82 -0.61 -0.89 16 9 C -0.12 -1.18 9.81 -39.56 -0.39 -1.57 16 10 C -0.10 -0.93 9.95 -39.88 -0.40 -1.33 16 11 C -0.13 -1.25 9.94 -39.90 -0.40 -1.64 16 12 C -0.09 -0.98 9.00 -39.52 -0.36 -1.34 16 13 C -0.11 -1.47 5.74 -106.86 -0.61 -2.08 16 14 N -0.50 -9.51 4.42 -229.48 -1.01 -10.53 16 15 C 0.18 4.06 4.29 -4.97 -0.02 4.04 16 16 C -0.51 -12.94 8.36 -34.44 -0.29 -13.23 16 17 H 0.07 1.71 7.20 -52.49 -0.38 1.33 16 18 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 19 N -0.90 -24.72 13.29 55.43 0.74 -23.99 16 20 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 21 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 C 0.08 1.35 4.78 -3.83 -0.02 1.33 16 25 C -0.08 -1.19 5.02 -29.52 -0.15 -1.33 16 26 C 0.22 3.83 15.43 -20.76 -0.32 3.51 16 27 N -0.46 -8.68 18.54 42.15 0.78 -7.90 16 28 H 0.08 1.23 6.23 -51.93 -0.32 0.91 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 34 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 35 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 36 H 0.14 1.40 6.10 -52.49 -0.32 1.08 16 37 H 0.00 0.06 6.21 -51.93 -0.32 -0.27 16 38 H 0.04 0.95 5.90 -51.93 -0.31 0.64 16 39 H 0.26 6.88 8.31 -40.82 -0.34 6.55 16 40 H 0.09 1.88 6.78 -51.93 -0.35 1.53 16 41 H 0.06 1.03 6.61 -51.93 -0.34 0.69 16 42 H 0.09 1.27 5.97 -51.93 -0.31 0.96 16 43 H 0.12 2.09 6.50 -51.93 -0.34 1.75 16 LS Contribution 352.65 15.07 5.31 5.31 Total: -1.00 -30.07 352.65 -8.98 -39.05 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -5.31 Total: 1.53 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -4.38 Total: -12.01 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: 0.41 Total: -49.73 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.07 -8.98 -39.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462024946.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.968 kcal (2) G-P(sol) polarization free energy of solvation -30.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds