Wall clock time and date at job start Fri Apr 10 2020 22:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46987 * 2 1 4 4 O 1.45193 * 109.46963 * 120.00534 * 2 1 3 5 5 C 1.34236 * 117.00020 * 269.99759 * 4 2 1 6 6 O 1.20826 * 119.99480 * 0.02562 * 5 4 2 7 7 C 1.50697 * 119.99643 * 179.97438 * 5 4 2 8 8 H 1.08996 * 115.56136 * 53.68981 * 7 5 4 9 9 C 1.53092 * 117.50552 * 199.46719 * 7 5 4 10 10 C 1.52558 * 59.89121 * 107.45892 * 9 7 5 11 11 C 1.53477 * 121.08217 * 249.56833 * 10 9 7 12 12 C 1.54381 * 106.39969 * 215.94332 * 11 10 9 13 13 C 1.54926 * 104.21960 * 336.43606 * 12 11 10 14 14 C 1.53874 * 120.82072 * 110.20709 * 10 9 7 15 15 C 1.50698 * 109.46935 * 240.00482 * 2 1 3 16 16 O 1.21281 * 119.99811 * 257.41475 * 15 2 1 17 17 N 1.34776 * 120.00404 * 77.41825 * 15 2 1 18 18 C 1.46504 * 119.99823 * 355.70535 * 17 15 2 19 19 C 1.46494 * 120.00206 * 175.70783 * 17 15 2 20 20 C 1.50705 * 109.47056 * 90.00004 * 19 17 15 21 21 H 1.07995 * 120.00395 * 359.97438 * 20 19 17 22 22 C 1.37883 * 119.99705 * 179.97438 * 20 19 17 23 23 N 1.31508 * 119.99916 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99646 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47037 * 59.99926 * 24 22 20 26 26 H 1.48494 * 109.46898 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.46996 * 299.99897 * 24 22 20 28 28 H 1.09001 * 109.46611 * 306.70390 * 1 2 3 29 29 H 1.09001 * 109.46750 * 66.70069 * 1 2 3 30 30 H 1.08992 * 109.46910 * 186.69896 * 1 2 3 31 31 H 1.09002 * 117.51564 * 0.02562 * 9 7 5 32 32 H 1.09008 * 117.51140 * 214.91434 * 9 7 5 33 33 H 1.08998 * 110.07390 * 335.17812 * 11 10 9 34 34 H 1.09000 * 110.07012 * 96.70980 * 11 10 9 35 35 H 1.08999 * 110.48489 * 95.11782 * 12 11 10 36 36 H 1.09004 * 110.48239 * 217.75324 * 12 11 10 37 37 H 1.09007 * 110.74705 * 279.39385 * 13 12 11 38 38 H 1.09003 * 110.90045 * 156.13234 * 13 12 11 39 39 H 1.08992 * 110.51380 * 286.27179 * 14 10 9 40 40 H 1.09001 * 110.50799 * 48.98372 * 14 10 9 41 41 H 1.08997 * 109.47053 * 92.49039 * 18 17 15 42 42 H 1.09000 * 109.47384 * 212.49189 * 18 17 15 43 43 H 1.09003 * 109.46823 * 332.49610 * 18 17 15 44 44 H 1.09001 * 109.47158 * 209.99441 * 19 17 15 45 45 H 1.08993 * 109.47397 * 330.00174 * 19 17 15 46 46 H 0.97009 * 119.99701 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0140 -0.6846 1.1854 5 6 2.2172 0.0639 2.2811 6 8 1.9974 1.2516 2.2506 7 6 2.7182 -0.5776 3.5494 8 1 3.6317 -1.1639 3.4508 9 6 2.5046 0.1850 4.8596 10 6 1.6765 -1.0595 4.5546 11 6 0.1758 -0.9575 4.2500 12 6 -0.4814 -2.2077 4.8734 13 6 0.6711 -3.2392 4.9622 14 6 1.8894 -2.3616 5.3465 15 6 2.0324 -0.7103 -1.2305 16 8 2.4502 -1.8458 -1.1471 17 7 2.0173 -0.0838 -2.4237 18 6 1.4265 1.2516 -2.5424 19 6 2.5915 -0.7381 -3.6019 20 6 1.5263 -1.5466 -4.2967 21 1 0.5221 -1.5710 -3.9001 22 6 1.8338 -2.2552 -5.4389 23 7 3.0565 -2.2250 -5.9221 24 14 0.5135 -3.2579 -6.2997 25 1 -0.5931 -2.3616 -6.7205 26 1 1.0956 -3.9210 -7.4940 27 1 -0.0112 -4.2886 -5.3683 28 1 -0.3632 0.6142 0.8239 29 1 -0.3633 0.4065 -0.9439 30 1 -0.3633 -1.0206 0.1199 31 1 2.0013 1.1503 4.8041 32 1 3.2779 0.1005 5.6232 33 1 -0.2368 -0.0545 4.6998 34 1 0.0127 -0.9473 3.1723 35 1 -0.8672 -1.9804 5.8672 36 1 -1.2783 -2.5806 4.2299 37 1 0.8320 -3.7224 3.9984 38 1 0.4704 -3.9809 5.7355 39 1 2.8186 -2.8446 5.0446 40 1 1.8927 -2.1608 6.4178 41 1 2.2018 2.0054 -2.4053 42 1 0.9802 1.3650 -3.5304 43 1 0.6580 1.3780 -1.7798 44 1 2.9774 0.0182 -4.2856 45 1 3.4033 -1.3963 -3.2925 46 1 3.2727 -2.7233 -6.7259 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747728386.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:17:19 Heat of formation + Delta-G solvation = -102.113901 kcal Electronic energy + Delta-G solvation = -26267.150167 eV Core-core repulsion = 22543.572545 eV Total energy + Delta-G solvation = -3723.577622 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.177 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.96836 -39.45609 -38.54982 -36.38890 -34.88327 -34.41916 -32.84192 -31.59661 -29.05719 -27.76445 -26.42677 -26.08595 -25.14292 -23.96144 -22.30111 -21.01773 -20.57784 -19.22026 -18.81150 -17.75028 -16.70366 -16.54512 -16.21579 -16.03036 -15.61932 -15.34585 -14.96300 -14.55392 -14.27564 -13.69798 -13.59667 -13.48809 -13.15247 -12.93161 -12.61108 -12.56128 -12.27358 -12.12824 -12.07219 -11.67323 -11.40883 -11.37467 -11.34821 -11.25088 -11.22540 -10.92023 -10.83530 -10.74106 -10.67399 -10.56511 -10.48323 -10.17018 -9.96467 -9.67206 -8.89924 -8.44792 -7.72516 -6.05782 -4.10721 2.05989 2.42486 3.24602 3.31614 3.36035 3.38683 3.40856 3.85651 4.14739 4.25488 4.42431 4.43574 4.49322 4.73437 4.85864 4.90092 4.98941 5.04804 5.11555 5.17401 5.28732 5.36340 5.39965 5.44881 5.47992 5.52184 5.62311 5.65232 5.68298 5.70719 5.75921 5.79363 5.87804 5.89361 5.97545 6.06313 6.11546 6.23869 6.44076 6.98436 7.37955 7.46133 7.74740 7.89980 8.19907 8.29400 8.84530 8.99111 9.54096 11.02420 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.019632 B = 0.003167 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.866504 B = 8839.180943 C = 9433.386931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.070 3.930 3 H 0.102 0.898 4 O -0.320 6.320 5 C 0.493 3.507 6 O -0.510 6.510 7 C -0.154 4.154 8 H 0.140 0.860 9 C -0.134 4.134 10 C -0.099 4.099 11 C -0.096 4.096 12 C -0.121 4.121 13 C -0.125 4.125 14 C -0.089 4.089 15 C 0.507 3.493 16 O -0.517 6.517 17 N -0.597 5.597 18 C 0.070 3.930 19 C 0.247 3.753 20 C -0.528 4.528 21 H 0.058 0.942 22 C 0.061 3.939 23 N -0.895 5.895 24 Si 0.899 3.101 25 H -0.277 1.277 26 H -0.286 1.286 27 H -0.276 1.276 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.048 0.952 42 H 0.079 0.921 43 H 0.063 0.937 44 H 0.036 0.964 45 H 0.044 0.956 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.783 5.315 22.424 23.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.011 3.989 3 H 0.120 0.880 4 O -0.235 6.235 5 C 0.336 3.664 6 O -0.399 6.399 7 C -0.173 4.173 8 H 0.157 0.843 9 C -0.171 4.171 10 C -0.099 4.099 11 C -0.134 4.134 12 C -0.158 4.158 13 C -0.163 4.163 14 C -0.126 4.126 15 C 0.291 3.709 16 O -0.392 6.392 17 N -0.330 5.330 18 C -0.073 4.073 19 C 0.129 3.871 20 C -0.567 4.567 21 H 0.076 0.924 22 C -0.141 4.141 23 N -0.534 5.534 24 Si 0.727 3.273 25 H -0.202 1.202 26 H -0.211 1.211 27 H -0.201 1.201 28 H 0.087 0.913 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.066 0.934 42 H 0.097 0.903 43 H 0.081 0.919 44 H 0.054 0.946 45 H 0.062 0.938 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.510 4.981 22.232 23.225 hybrid contribution -0.611 -0.289 -0.825 1.067 sum -5.121 4.692 21.407 22.505 Atomic orbital electron populations 1.22230 0.92321 1.04090 1.03796 1.22673 0.95953 0.97371 0.82895 0.88016 1.86646 1.76165 1.41227 1.19418 1.22619 0.73689 0.85288 0.84762 1.90627 1.48395 1.16507 1.84325 1.21906 1.02829 1.06132 0.86416 0.84279 1.23159 1.02324 0.96521 0.95110 1.21926 0.92840 0.96334 0.98841 1.21743 0.91452 0.98875 1.01289 1.22323 0.97853 0.94899 1.00728 1.22510 0.94446 0.97280 1.02047 1.21946 0.99073 0.92603 0.99014 1.19777 0.80413 0.86890 0.83772 1.90707 1.46030 1.17145 1.85291 1.48089 1.58413 1.17220 1.09323 1.21900 0.97720 0.84322 1.03396 1.19337 0.94566 0.92940 0.80271 1.21381 0.96448 1.29375 1.09465 0.92407 1.24938 0.95660 0.96425 0.97054 1.69921 1.18520 1.42226 1.22706 0.86540 0.81565 0.80391 0.78830 1.20225 1.21147 1.20131 0.91316 0.89341 0.90627 0.87358 0.87240 0.91075 0.91356 0.91491 0.91297 0.90830 0.91307 0.90995 0.90617 0.93372 0.90261 0.91878 0.94614 0.93831 0.92606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 9.16 37.16 0.34 -2.04 16 2 C 0.07 1.19 2.15 -27.88 -0.06 1.14 16 3 H 0.10 1.63 6.52 -51.93 -0.34 1.29 16 4 O -0.32 -5.56 9.48 -45.74 -0.43 -5.99 16 5 C 0.49 7.35 6.41 36.00 0.23 7.58 16 6 O -0.51 -8.23 15.66 -18.75 -0.29 -8.52 16 7 C -0.15 -1.74 6.14 -91.94 -0.56 -2.31 16 8 H 0.14 1.41 8.14 -51.93 -0.42 0.99 16 9 C -0.13 -1.19 9.77 -26.91 -0.26 -1.45 16 10 C -0.10 -0.94 2.44 -154.25 -0.38 -1.31 16 11 C -0.10 -0.93 6.18 -25.76 -0.16 -1.09 16 12 C -0.12 -0.98 6.84 -24.99 -0.17 -1.15 16 13 C -0.13 -1.01 6.91 -24.66 -0.17 -1.18 16 14 C -0.09 -0.69 6.58 -25.23 -0.17 -0.86 16 15 C 0.51 11.11 6.96 -10.99 -0.08 11.03 16 16 O -0.52 -13.66 16.22 -13.43 -0.22 -13.88 16 17 N -0.60 -12.91 2.86 -182.96 -0.52 -13.43 16 18 C 0.07 1.13 9.85 59.85 0.59 1.72 16 19 C 0.25 6.52 5.14 -5.19 -0.03 6.50 16 20 C -0.53 -15.01 9.39 -34.44 -0.32 -15.33 16 21 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 22 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 23 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 24 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.09 1.17 5.89 -51.93 -0.31 0.87 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.11 1.03 7.81 -51.93 -0.41 0.63 16 32 H 0.11 0.72 8.14 -51.92 -0.42 0.30 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.79 7.26 -51.93 -0.38 0.41 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 1.28 8.09 -51.93 -0.42 0.86 16 43 H 0.06 0.84 4.44 -51.93 -0.23 0.61 16 44 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 45 H 0.04 1.29 7.48 -51.93 -0.39 0.90 16 46 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 377.08 15.07 5.68 5.68 Total: -1.00 -34.36 377.08 -8.86 -43.22 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -7.50 Total: -0.92 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -1.29 Total: 2.90 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.21 Total: -39.33 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.94 Total: -28.40 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.36 -8.86 -43.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747728386.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.893 kcal (2) G-P(sol) polarization free energy of solvation -34.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds