Wall clock time and date at job start Fri Apr 10 2020 22:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 110.21526 * 2 1 4 4 O 1.21280 * 120.00347 * 94.52358 * 3 2 1 5 5 N 1.34783 * 119.99958 * 274.52165 * 3 2 1 6 6 C 1.46497 * 120.00137 * 179.97438 * 5 3 2 7 7 H 1.09005 * 109.36241 * 34.74935 * 6 5 3 8 8 C 1.51037 * 109.41653 * 154.48740 * 6 5 3 9 9 C 1.52564 * 109.27964 * 212.21261 * 8 6 5 10 10 C 1.47095 * 114.20856 * 274.77952 * 9 8 6 11 11 C 1.54865 * 110.32148 * 62.88309 * 10 9 8 12 12 N 1.44580 * 109.59808 * 288.73118 * 11 10 9 13 13 C 1.36937 * 118.64303 * 270.70680 * 12 11 10 14 14 H 1.07999 * 120.00115 * 26.51373 * 13 12 11 15 15 C 1.38817 * 119.99813 * 206.50692 * 13 12 11 16 16 N 1.31621 * 119.99994 * 15.68877 * 15 13 12 17 17 Si 1.86798 * 119.99989 * 195.68396 * 15 13 12 18 18 H 1.48494 * 109.47188 * 90.00114 * 17 15 13 19 19 H 1.48500 * 109.46915 * 210.00490 * 17 15 13 20 20 H 1.48504 * 109.46869 * 330.00001 * 17 15 13 21 21 C 1.47604 * 122.71318 * 90.72546 * 12 11 10 22 22 C 1.54480 * 110.31827 * 121.97561 * 2 1 3 23 23 C 1.54628 * 101.76302 * 144.45745 * 22 2 1 24 24 C 1.51279 * 104.19437 * 335.20018 * 23 22 2 25 25 O 1.21283 * 124.93927 * 196.27279 * 24 23 22 26 26 N 1.34418 * 110.11685 * 16.25190 * 24 23 22 27 27 H 1.08997 * 109.47142 * 59.30351 * 1 2 3 28 28 H 1.09000 * 109.46966 * 179.30151 * 1 2 3 29 29 H 1.09002 * 109.46922 * 299.29916 * 1 2 3 30 30 H 0.96994 * 119.99649 * 0.02562 * 5 3 2 31 31 H 1.09004 * 109.63327 * 92.20622 * 8 6 5 32 32 H 1.09001 * 109.42155 * 332.09649 * 8 6 5 33 33 H 1.09007 * 108.50886 * 153.60545 * 9 8 6 34 34 H 1.08999 * 108.51090 * 35.95592 * 9 8 6 35 35 H 1.08995 * 109.32711 * 183.14145 * 10 9 8 36 36 H 1.08993 * 109.32581 * 302.62090 * 10 9 8 37 37 H 1.08999 * 109.45045 * 48.76755 * 11 10 9 38 38 H 1.08992 * 109.44746 * 168.69480 * 11 10 9 39 39 H 0.96993 * 120.00250 * 179.97438 * 16 15 13 40 40 H 1.09001 * 108.94505 * 78.55620 * 21 12 11 41 41 H 1.08994 * 108.95068 * 197.18454 * 21 12 11 42 42 H 1.09000 * 110.96938 * 262.57237 * 22 2 1 43 43 H 1.08998 * 110.97109 * 26.33841 * 22 2 1 44 44 H 1.09008 * 110.48357 * 216.52062 * 23 22 2 45 45 H 1.09005 * 110.60136 * 93.93591 * 23 22 2 46 46 H 0.96994 * 124.34841 * 180.42299 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0507 1.4141 0.0000 4 8 2.3380 1.9546 1.0470 5 7 2.1973 2.0783 -1.1636 6 6 2.7029 3.4532 -1.1636 7 1 3.4385 3.5678 -0.3673 8 6 3.3554 3.7482 -2.4934 9 6 4.5061 4.7279 -2.2837 10 6 4.1005 6.1418 -2.2754 11 6 3.1407 6.4190 -1.0921 12 7 1.8595 5.8016 -1.3521 13 6 0.9077 6.5220 -2.0231 14 1 1.2042 7.3068 -2.7032 15 6 -0.4384 6.2436 -1.8291 16 7 -0.8189 5.5215 -0.7965 17 14 -1.7096 6.8938 -3.0335 18 1 -1.9161 5.9017 -4.1189 19 1 -2.9928 7.1239 -2.3224 20 1 -1.2305 8.1728 -3.6164 21 6 1.5349 4.4269 -0.9237 22 6 2.0664 -0.7672 1.2289 23 6 3.3310 -1.4437 0.6508 24 6 3.0536 -1.5423 -0.8330 25 8 3.6592 -2.2528 -1.6072 26 7 2.0378 -0.7283 -1.1685 27 1 -0.3633 0.5246 -0.8836 28 1 -0.3633 -1.0276 -0.0125 29 1 -0.3633 0.5029 0.8962 30 1 1.9672 1.6462 -2.0009 31 1 2.6233 4.1870 -3.1714 32 1 3.7394 2.8225 -2.9221 33 1 5.2349 4.5815 -3.0810 34 1 4.9856 4.4997 -1.3318 35 1 4.9856 6.7703 -2.1769 36 1 3.5960 6.3778 -3.2122 37 1 3.5639 6.0053 -0.1768 38 1 3.0084 7.4947 -0.9765 39 1 -1.7594 5.3273 -0.6608 40 1 1.2936 4.4351 0.1393 41 1 0.6644 4.0791 -1.4797 42 1 2.3253 -0.0805 2.0349 43 1 1.3465 -1.5117 1.5687 44 1 3.4630 -2.4365 1.0811 45 1 4.2125 -0.8292 0.8341 46 1 1.6857 -0.6345 -2.0674 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034384082.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:17:18 Heat of formation + Delta-G solvation = -53.722449 kcal Electronic energy + Delta-G solvation = -27421.212777 eV Core-core repulsion = 23732.026317 eV Total energy + Delta-G solvation = -3689.186460 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.16138 -39.16706 -37.81577 -36.41216 -34.53207 -33.59846 -31.57202 -31.10585 -30.77838 -29.79583 -26.14505 -25.12741 -24.34927 -23.63907 -22.25640 -20.88703 -20.24031 -19.78248 -19.24277 -18.01333 -16.88880 -16.69206 -15.83819 -15.52319 -15.31153 -14.89896 -14.40664 -14.20456 -14.08314 -13.97619 -13.64821 -13.35678 -13.30370 -12.92671 -12.74714 -12.54926 -12.45296 -12.32073 -12.11765 -11.43599 -11.34381 -11.21310 -11.15225 -11.02619 -10.76255 -10.50500 -10.32072 -10.26200 -10.16278 -10.02655 -9.99417 -9.83259 -9.54818 -9.04680 -8.62344 -8.42262 -6.68767 -5.80551 -3.25237 2.40217 2.64517 3.18538 3.31354 3.34343 3.41175 3.42096 4.06451 4.30342 4.46195 4.53750 4.78843 4.88647 5.11080 5.20519 5.30075 5.39675 5.42626 5.50627 5.54817 5.59750 5.66503 5.69930 5.84957 5.88626 5.93623 5.99086 6.15998 6.30205 6.44296 6.49401 6.56726 6.62544 6.63485 6.72884 6.76779 6.85861 6.93157 7.07400 7.31927 7.69334 7.78067 7.81036 8.03467 8.41247 8.45188 9.20487 9.87390 10.32671 11.25815 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.015516 B = 0.004528 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.127585 B = 6182.382385 C = 7080.402921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.141 3.859 3 C 0.511 3.489 4 O -0.529 6.529 5 N -0.708 5.708 6 C 0.117 3.883 7 H 0.074 0.926 8 C -0.116 4.116 9 C -0.098 4.098 10 C -0.147 4.147 11 C 0.154 3.846 12 N -0.587 5.587 13 C -0.258 4.258 14 H 0.066 0.934 15 C 0.005 3.995 16 N -0.901 5.901 17 Si 0.899 3.101 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.279 1.279 21 C 0.176 3.824 22 C -0.115 4.115 23 C -0.158 4.158 24 C 0.524 3.476 25 O -0.534 6.534 26 N -0.721 5.721 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.393 0.607 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.044 0.956 34 H 0.049 0.951 35 H 0.047 0.953 36 H 0.060 0.940 37 H 0.032 0.968 38 H 0.046 0.954 39 H 0.253 0.747 40 H 0.032 0.968 41 H 0.077 0.923 42 H 0.111 0.889 43 H 0.091 0.909 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.122 -11.920 1.167 13.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.050 3.950 3 C 0.294 3.706 4 O -0.404 6.404 5 N -0.357 5.357 6 C 0.013 3.987 7 H 0.092 0.908 8 C -0.154 4.154 9 C -0.136 4.136 10 C -0.188 4.188 11 C 0.026 3.974 12 N -0.308 5.308 13 C -0.388 4.388 14 H 0.084 0.916 15 C -0.194 4.194 16 N -0.545 5.545 17 Si 0.729 3.271 18 H -0.216 1.216 19 H -0.218 1.218 20 H -0.204 1.204 21 C 0.050 3.950 22 C -0.153 4.153 23 C -0.199 4.199 24 C 0.311 3.689 25 O -0.411 6.411 26 N -0.379 5.379 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.103 0.897 30 H 0.226 0.774 31 H 0.100 0.900 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.051 0.949 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.050 0.950 41 H 0.095 0.905 42 H 0.129 0.871 43 H 0.110 0.890 44 H 0.123 0.877 45 H 0.124 0.876 46 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 5.547 -11.932 1.723 13.271 hybrid contribution -1.118 0.251 -1.544 1.923 sum 4.429 -11.681 0.179 12.494 Atomic orbital electron populations 1.22045 0.90674 1.03446 1.04682 1.21308 0.96662 0.89765 0.87236 1.20487 0.78253 0.87427 0.84467 1.90715 1.49739 1.68900 1.31095 1.46110 1.65974 1.15418 1.08217 1.21874 0.98581 0.80589 0.97702 0.90792 1.21311 0.98494 0.98171 0.97395 1.20219 0.96836 0.96035 1.00533 1.21499 0.99438 0.95285 1.02552 1.20740 0.86425 0.96662 0.93541 1.43535 1.10830 1.09870 1.66602 1.19225 0.85985 1.15647 1.17957 0.91580 1.25043 0.97371 1.00106 0.96849 1.70090 1.15195 1.42513 1.26694 0.86337 0.81264 0.78715 0.80742 1.21576 1.21788 1.20420 1.21295 0.92782 0.81934 0.99024 1.22663 0.96404 0.99662 0.96558 1.22405 1.00376 1.04049 0.93025 1.20915 0.78652 0.78140 0.91185 1.90759 1.51842 1.40923 1.57558 1.46368 1.36491 1.43946 1.11074 0.91078 0.90765 0.89688 0.77398 0.90039 0.93229 0.93683 0.93242 0.93411 0.92080 0.94931 0.93522 0.93728 0.95026 0.90489 0.87107 0.89043 0.87700 0.87575 0.75011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 8.79 37.16 0.33 -1.15 16 2 C 0.14 1.55 1.12 -132.06 -0.15 1.40 16 3 C 0.51 7.81 6.71 -10.98 -0.07 7.73 16 4 O -0.53 -10.01 15.34 5.56 0.09 -9.93 16 5 N -0.71 -10.85 4.88 -54.29 -0.26 -11.12 16 6 C 0.12 2.15 2.28 -68.43 -0.16 1.99 16 7 H 0.07 1.47 6.73 -51.93 -0.35 1.12 16 8 C -0.12 -1.91 5.07 -27.94 -0.14 -2.06 16 9 C -0.10 -1.56 5.16 -29.79 -0.15 -1.71 16 10 C -0.15 -2.54 5.73 -28.58 -0.16 -2.70 16 11 C 0.15 3.18 5.66 -4.08 -0.02 3.15 16 12 N -0.59 -14.05 2.27 -172.09 -0.39 -14.44 16 13 C -0.26 -6.79 9.44 -15.06 -0.14 -6.94 16 14 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16 15 C 0.01 0.14 4.87 -17.43 -0.08 0.05 16 16 N -0.90 -25.34 11.01 55.49 0.61 -24.73 16 17 Si 0.90 21.07 29.58 -169.99 -5.03 16.04 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 C 0.18 4.06 4.26 -2.94 -0.01 4.05 16 22 C -0.11 -1.08 6.15 -25.10 -0.15 -1.24 16 23 C -0.16 -1.52 6.85 -26.74 -0.18 -1.71 16 24 C 0.52 6.41 8.43 -10.86 -0.09 6.32 16 25 O -0.53 -8.52 18.03 5.56 0.10 -8.42 16 26 N -0.72 -7.46 4.91 -47.69 -0.23 -7.70 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.39 5.07 7.85 -40.82 -0.32 4.75 16 31 H 0.08 1.53 7.48 -51.93 -0.39 1.14 16 32 H 0.05 0.72 7.95 -51.93 -0.41 0.31 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.78 7.35 -51.93 -0.38 0.40 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.03 0.66 8.06 -51.93 -0.42 0.24 16 38 H 0.05 0.97 7.99 -51.93 -0.41 0.56 16 39 H 0.25 6.91 8.31 -40.82 -0.34 6.58 16 40 H 0.03 0.85 8.03 -51.93 -0.42 0.43 16 41 H 0.08 1.95 6.31 -51.93 -0.33 1.62 16 42 H 0.11 1.18 6.91 -51.93 -0.36 0.82 16 43 H 0.09 0.65 7.92 -51.93 -0.41 0.24 16 44 H 0.10 0.81 8.14 -51.92 -0.42 0.39 16 45 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.41 3.69 8.76 -40.82 -0.36 3.33 16 LS Contribution 360.51 15.07 5.43 5.43 Total: -1.00 -32.19 360.51 -8.38 -40.56 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -7.49 Total: 7.09 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: -1.20 Total: 7.20 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: -0.28 Total: -57.98 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: 0.19 Total: -18.34 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.19 -8.38 -40.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034384082.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.157 kcal (2) G-P(sol) polarization free energy of solvation -32.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds