Wall clock time and date at job start Fri Apr 10 2020 22:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.50702 * 110.43157 * 2 1 4 4 O 1.21277 * 119.99812 * 122.54565 * 3 2 1 5 5 N 1.34775 * 119.99942 * 302.53977 * 3 2 1 6 6 C 1.46499 * 119.99896 * 180.02562 * 5 3 2 7 7 H 1.09006 * 108.45797 * 327.29027 * 6 5 3 8 8 C 1.52524 * 108.52164 * 209.71877 * 6 5 3 9 9 C 1.50130 * 105.41464 * 149.35344 * 8 6 5 10 10 C 1.54840 * 110.81451 * 97.68354 * 9 8 6 11 11 C 1.54899 * 110.14020 * 321.13265 * 10 9 8 12 12 N 1.43434 * 116.07927 * 318.63398 * 11 10 9 13 13 C 1.36928 * 120.53914 * 271.55331 * 12 11 10 14 14 H 1.08003 * 120.00307 * 336.41782 * 13 12 11 15 15 C 1.38819 * 120.00011 * 156.42210 * 13 12 11 16 16 N 1.31613 * 119.99556 * 338.89779 * 15 13 12 17 17 Si 1.86799 * 120.00020 * 158.89864 * 15 13 12 18 18 H 1.48499 * 109.47458 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47182 * 120.00119 * 17 15 13 20 20 H 1.48510 * 109.46644 * 239.99847 * 17 15 13 21 21 C 1.46239 * 108.52282 * 84.99616 * 6 5 3 22 22 C 1.54624 * 110.48447 * 122.53977 * 2 1 3 23 23 C 1.54481 * 101.76302 * 143.60957 * 22 2 1 24 24 N 1.46768 * 105.47246 * 334.58335 * 23 22 2 25 25 C 1.34411 * 111.29982 * 17.01744 * 24 23 22 26 26 O 1.21285 * 124.94080 * 179.62780 * 25 24 23 27 27 H 1.09003 * 109.46653 * 59.30098 * 1 2 3 28 28 H 1.08998 * 109.46756 * 179.30270 * 1 2 3 29 29 H 1.08995 * 109.47122 * 299.30031 * 1 2 3 30 30 H 0.96998 * 120.00050 * 359.72412 * 5 3 2 31 31 H 1.08995 * 110.24999 * 268.32198 * 8 6 5 32 32 H 1.08994 * 110.24804 * 30.38157 * 8 6 5 33 33 H 1.08999 * 109.21293 * 337.33628 * 9 8 6 34 34 H 1.09002 * 109.17240 * 218.00048 * 9 8 6 35 35 H 1.08996 * 109.36052 * 200.92576 * 10 9 8 36 36 H 1.09011 * 109.24698 * 81.26724 * 10 9 8 37 37 H 1.09001 * 108.15558 * 196.92199 * 11 10 9 38 38 H 1.09003 * 108.00143 * 80.23328 * 11 10 9 39 39 H 0.97000 * 120.00072 * 179.97438 * 16 15 13 40 40 H 1.08997 * 109.84755 * 299.15450 * 21 6 5 41 41 H 1.09005 * 109.84415 * 60.07613 * 21 6 5 42 42 H 1.09000 * 110.97199 * 261.72685 * 22 2 1 43 43 H 1.08997 * 110.97311 * 25.49260 * 22 2 1 44 44 H 1.08997 * 110.24923 * 93.58564 * 23 22 2 45 45 H 1.09005 * 110.24843 * 215.49862 * 23 22 2 46 46 H 0.97000 * 124.34853 * 197.01441 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0562 1.4122 0.0000 4 8 2.7973 1.7832 0.8854 5 7 1.7031 2.2628 -0.9840 6 6 2.2150 3.6355 -0.9843 7 1 2.3330 3.9601 0.0497 8 6 1.1847 4.5366 -1.6573 9 6 1.3342 5.8764 -0.9965 10 6 2.2208 6.8154 -1.8508 11 6 3.3934 6.0191 -2.4757 12 7 4.0284 5.0574 -1.6218 13 6 5.0732 5.4247 -0.8164 14 1 5.6711 6.2883 -1.0678 15 6 5.3639 4.6870 0.3230 16 7 4.4409 3.9202 0.8636 17 14 7.0649 4.7828 1.0889 18 1 7.9135 5.7083 0.2960 19 1 6.9529 5.2842 2.4822 20 1 7.6808 3.4315 1.0971 21 6 3.5292 3.6411 -1.6257 22 6 2.0712 -0.7791 1.2211 23 6 3.3219 -1.4650 0.6280 24 7 3.0602 -1.5793 -0.8116 25 6 2.0623 -0.7633 -1.1927 26 8 1.6484 -0.6553 -2.3276 27 1 -0.3633 0.5247 -0.8837 28 1 -0.3633 -1.0276 -0.0125 29 1 -0.3633 0.5029 0.8961 30 1 1.1136 1.9649 -1.6943 31 1 1.3933 4.6168 -2.7241 32 1 0.1798 4.1466 -1.4961 33 1 1.7925 5.7439 -0.0165 34 1 0.3492 6.3269 -0.8738 35 1 2.6193 7.6094 -1.2194 36 1 1.6177 7.2541 -2.6458 37 1 4.1494 6.7313 -2.8065 38 1 3.0151 5.4961 -3.3541 39 1 4.6441 3.4044 1.6596 40 1 4.2161 3.0051 -1.0675 41 1 3.4421 3.2812 -2.6509 42 1 2.3449 -0.0990 2.0277 43 1 1.3472 -1.5179 1.5646 44 1 4.2066 -0.8530 0.8031 45 1 3.4545 -2.4534 1.0681 46 1 3.5450 -2.1679 -1.4110 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034394698.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:17:26 Heat of formation + Delta-G solvation = -36.436218 kcal Electronic energy + Delta-G solvation = -28195.251802 eV Core-core repulsion = 24506.814928 eV Total energy + Delta-G solvation = -3688.436873 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.94689 -38.83891 -37.36495 -36.14605 -33.97841 -33.17035 -32.97263 -30.68526 -29.69406 -28.52273 -26.06674 -25.42449 -24.13708 -23.26130 -21.98820 -21.29831 -19.82947 -19.17437 -18.55273 -17.38240 -17.10769 -16.54013 -15.43450 -15.13469 -14.91971 -14.66788 -14.27631 -14.12434 -13.73659 -13.68134 -13.50003 -13.39384 -12.97398 -12.61836 -12.34200 -12.24154 -12.16930 -12.14960 -11.78698 -11.31513 -11.25867 -11.19684 -11.07883 -10.69142 -10.60943 -10.17366 -10.09268 -9.77897 -9.73971 -9.71947 -9.48139 -9.33467 -9.13523 -8.87803 -8.41936 -8.07277 -6.58432 -5.58008 -3.01282 2.52338 3.20020 3.46060 3.48170 3.54889 3.56700 3.86540 4.33265 4.48742 4.63803 4.78250 5.06343 5.19551 5.34903 5.49285 5.51429 5.58506 5.62711 5.67237 5.69810 5.77682 5.90021 5.91095 6.05548 6.13521 6.19213 6.27569 6.38284 6.47769 6.58975 6.68403 6.74219 6.91995 6.96485 7.00474 7.04716 7.15308 7.24246 7.34884 7.64606 7.70983 7.97557 8.23148 8.35633 8.57149 9.01894 9.34410 9.99672 10.52829 11.46829 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.013518 B = 0.006047 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.780225 B = 4628.989161 C = 5884.268417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.122 4.122 3 C 0.515 3.485 4 O -0.478 6.478 5 N -0.724 5.724 6 C 0.130 3.870 7 H 0.131 0.869 8 C -0.123 4.123 9 C -0.104 4.104 10 C -0.144 4.144 11 C 0.157 3.843 12 N -0.580 5.580 13 C -0.273 4.273 14 H 0.066 0.934 15 C 0.010 3.990 16 N -0.860 5.860 17 Si 0.888 3.112 18 H -0.282 1.282 19 H -0.293 1.293 20 H -0.292 1.292 21 C 0.159 3.841 22 C -0.116 4.116 23 C 0.100 3.900 24 N -0.729 5.729 25 C 0.535 3.465 26 O -0.527 6.527 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.387 0.613 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.036 0.964 35 H 0.051 0.949 36 H 0.042 0.958 37 H 0.032 0.968 38 H 0.026 0.974 39 H 0.260 0.740 40 H 0.092 0.908 41 H 0.003 0.997 42 H 0.110 0.890 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.416 -9.913 -0.677 13.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.130 4.130 3 C 0.296 3.704 4 O -0.349 6.349 5 N -0.375 5.375 6 C 0.026 3.974 7 H 0.148 0.852 8 C -0.161 4.161 9 C -0.142 4.142 10 C -0.185 4.185 11 C 0.028 3.972 12 N -0.301 5.301 13 C -0.402 4.402 14 H 0.083 0.917 15 C -0.192 4.192 16 N -0.502 5.502 17 Si 0.718 3.282 18 H -0.207 1.207 19 H -0.221 1.221 20 H -0.219 1.219 21 C 0.034 3.966 22 C -0.154 4.154 23 C -0.024 4.024 24 N -0.384 5.384 25 C 0.320 3.680 26 O -0.403 6.403 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.219 0.781 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.050 0.950 38 H 0.044 0.956 39 H 0.071 0.929 40 H 0.110 0.890 41 H 0.021 0.979 42 H 0.129 0.871 43 H 0.101 0.899 44 H 0.098 0.902 45 H 0.097 0.903 46 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -8.082 -9.587 -0.369 12.545 hybrid contribution 0.793 -0.451 -0.092 0.917 sum -7.289 -10.038 -0.461 12.414 Atomic orbital electron populations 1.21617 0.90425 1.02732 1.03415 1.21733 0.98986 0.96051 0.96192 1.19487 0.82174 0.85118 0.83612 1.90896 1.32969 1.75848 1.35195 1.46422 1.50779 1.13844 1.26497 1.21203 0.92956 0.77569 1.05625 0.85164 1.21357 0.97891 0.96761 1.00123 1.21281 0.97636 0.94567 1.00730 1.22907 0.98386 0.98622 0.98618 1.20419 0.92567 0.91818 0.92420 1.44025 1.35467 1.02749 1.47903 1.19056 1.05033 1.13605 1.02544 0.91670 1.24982 0.97327 1.00762 0.96114 1.69868 1.29838 1.29807 1.20664 0.86473 0.85875 0.77077 0.78749 1.20684 1.22059 1.21939 1.20397 0.94386 0.86902 0.94885 1.22657 0.96237 0.99151 0.97348 1.22128 0.99399 1.01261 0.79621 1.46133 1.37136 1.43982 1.11120 1.20402 0.79476 0.79168 0.88943 1.90729 1.61780 1.66407 1.21347 0.91241 0.91798 0.90990 0.78055 0.92065 0.92794 0.90689 0.94493 0.93040 0.93973 0.95008 0.95614 0.92871 0.88957 0.97859 0.87115 0.89875 0.90173 0.90309 0.75198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.44 8.30 37.16 0.31 -1.13 16 2 C -0.12 -1.73 0.75 -155.67 -0.12 -1.85 16 3 C 0.52 9.52 6.47 -10.98 -0.07 9.45 16 4 O -0.48 -10.58 13.06 5.56 0.07 -10.51 16 5 N -0.72 -13.37 4.74 -57.21 -0.27 -13.64 16 6 C 0.13 2.75 1.84 -71.39 -0.13 2.62 16 7 H 0.13 3.30 4.55 -51.93 -0.24 3.06 16 8 C -0.12 -2.25 5.25 -28.40 -0.15 -2.40 16 9 C -0.10 -1.99 5.65 -27.19 -0.15 -2.14 16 10 C -0.14 -2.74 6.41 -24.76 -0.16 -2.90 16 11 C 0.16 3.35 5.18 -4.66 -0.02 3.32 16 12 N -0.58 -14.42 2.60 -175.08 -0.46 -14.88 16 13 C -0.27 -7.48 9.61 -15.06 -0.14 -7.63 16 14 H 0.07 1.80 7.90 -52.48 -0.41 1.39 16 15 C 0.01 0.26 4.86 -17.43 -0.08 0.18 16 16 N -0.86 -23.98 7.84 55.49 0.43 -23.55 16 17 Si 0.89 22.00 29.60 -169.99 -5.03 16.97 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 19 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 20 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 21 C 0.16 3.82 4.67 -5.20 -0.02 3.79 16 22 C -0.12 -1.35 6.02 -25.10 -0.15 -1.50 16 23 C 0.10 1.10 7.78 -3.12 -0.02 1.08 16 24 N -0.73 -9.01 6.24 -59.20 -0.37 -9.38 16 25 C 0.54 8.14 7.15 -10.86 -0.08 8.06 16 26 O -0.53 -9.41 17.87 5.55 0.10 -9.31 16 27 H 0.07 0.83 7.50 -51.93 -0.39 0.44 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.39 6.44 7.95 -40.82 -0.32 6.11 16 31 H 0.06 1.10 6.28 -51.93 -0.33 0.77 16 32 H 0.05 0.87 8.04 -51.93 -0.42 0.45 16 33 H 0.07 1.70 6.82 -51.93 -0.35 1.35 16 34 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 37 H 0.03 0.68 7.99 -51.93 -0.41 0.26 16 38 H 0.03 0.51 6.88 -51.93 -0.36 0.16 16 39 H 0.26 7.36 8.08 -40.82 -0.33 7.04 16 40 H 0.09 2.55 6.06 -51.93 -0.31 2.24 16 41 H 0.00 0.08 8.13 -51.93 -0.42 -0.34 16 42 H 0.11 1.46 6.96 -51.93 -0.36 1.10 16 43 H 0.08 0.73 7.91 -51.93 -0.41 0.32 16 44 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.41 4.26 8.96 -40.82 -0.37 3.90 16 LS Contribution 350.20 15.07 5.28 5.28 Total: -1.00 -31.41 350.20 -8.44 -39.85 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -7.19 Total: 10.23 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: -1.00 Total: 8.95 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: -0.66 Total: -61.44 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: 0.17 Total: -19.82 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.41 -8.44 -39.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034394698.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.410 kcal (2) G-P(sol) polarization free energy of solvation -31.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds