Wall clock time and date at job start Fri Apr 10 2020 22:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 110.43700 * 2 1 4 4 O 1.21278 * 120.00271 * 120.69739 * 3 2 1 5 5 N 1.34778 * 119.99680 * 300.70711 * 3 2 1 6 6 C 1.46500 * 119.99545 * 179.97438 * 5 3 2 7 7 H 1.09002 * 109.36867 * 34.73648 * 6 5 3 8 8 C 1.51036 * 109.41430 * 154.48396 * 6 5 3 9 9 C 1.52572 * 109.27542 * 212.20368 * 8 6 5 10 10 C 1.47090 * 114.21068 * 274.78230 * 9 8 6 11 11 C 1.54858 * 110.32449 * 62.88161 * 10 9 8 12 12 N 1.44581 * 109.60026 * 288.73362 * 11 10 9 13 13 C 1.36940 * 118.64023 * 270.70619 * 12 11 10 14 14 H 1.07995 * 120.00371 * 26.50280 * 13 12 11 15 15 C 1.38817 * 119.99680 * 206.49645 * 13 12 11 16 16 N 1.31621 * 119.99994 * 15.70308 * 15 13 12 17 17 Si 1.86798 * 119.99989 * 195.69827 * 15 13 12 18 18 H 1.48494 * 109.47224 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47320 * 120.00545 * 17 15 13 20 20 H 1.48504 * 109.46864 * 240.00472 * 17 15 13 21 21 C 1.47602 * 122.71283 * 90.72577 * 12 11 10 22 22 C 1.54633 * 110.48633 * 122.54357 * 2 1 3 23 23 C 1.54835 * 101.60172 * 143.56796 * 22 2 1 24 24 N 1.46756 * 105.49628 * 334.56530 * 23 22 2 25 25 C 1.34422 * 111.30281 * 17.04111 * 24 23 22 26 26 O 1.21281 * 124.94396 * 179.62902 * 25 24 23 27 27 H 1.08994 * 109.47316 * 59.29630 * 1 2 3 28 28 H 1.09008 * 109.47045 * 179.30364 * 1 2 3 29 29 H 1.09005 * 109.46940 * 299.29598 * 1 2 3 30 30 H 0.96997 * 120.00285 * 359.97438 * 5 3 2 31 31 H 1.09002 * 109.63493 * 92.20576 * 8 6 5 32 32 H 1.08993 * 109.42600 * 332.08602 * 8 6 5 33 33 H 1.08997 * 108.50894 * 153.60313 * 9 8 6 34 34 H 1.08998 * 108.50674 * 35.96016 * 9 8 6 35 35 H 1.08998 * 109.32996 * 183.14409 * 10 9 8 36 36 H 1.09001 * 109.32814 * 302.62027 * 10 9 8 37 37 H 1.09000 * 109.45254 * 48.76984 * 11 10 9 38 38 H 1.09002 * 109.45013 * 168.69461 * 11 10 9 39 39 H 0.96993 * 120.00250 * 179.97438 * 16 15 13 40 40 H 1.08992 * 108.95009 * 78.55528 * 21 12 11 41 41 H 1.09009 * 108.94545 * 197.18381 * 21 12 11 42 42 H 1.08992 * 110.96729 * 261.72487 * 22 2 1 43 43 H 1.09000 * 110.96691 * 25.49060 * 22 2 1 44 44 H 1.09002 * 110.21719 * 215.56768 * 23 22 2 45 45 H 1.08999 * 110.32389 * 93.62622 * 23 22 2 46 46 H 0.96996 * 124.35034 * 197.01215 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0562 1.4121 0.0000 4 8 2.7704 1.7932 0.9031 5 7 1.7329 2.2517 -1.0036 6 6 2.2440 3.6246 -1.0033 7 1 3.2466 3.6370 -0.5756 8 6 2.2988 4.1403 -2.4218 9 6 3.4686 5.1098 -2.5605 10 6 3.1555 6.4928 -2.1695 11 6 2.7816 6.5557 -0.6680 12 7 1.4856 5.9477 -0.4650 13 6 0.3690 6.7343 -0.5634 14 1 0.3867 7.6230 -1.1767 15 6 -0.7859 6.3892 0.1253 16 7 -0.7320 5.5057 1.0995 17 14 -2.4163 7.1788 -0.3304 18 1 -2.2091 8.1311 -1.4508 19 1 -3.3767 6.1258 -0.7475 20 1 -2.9593 7.9067 0.8446 21 6 1.3166 4.5144 -0.1558 22 6 2.0712 -0.7792 1.2211 23 6 3.3233 -1.4657 0.6224 24 7 3.0582 -1.5786 -0.8166 25 6 2.0594 -0.7623 -1.1947 26 8 1.6428 -0.6533 -2.3285 27 1 -0.3633 0.5247 -0.8835 28 1 -0.3633 -1.0277 -0.0125 29 1 -0.3633 0.5029 0.8963 30 1 1.1619 1.9469 -1.7260 31 1 1.3687 4.6562 -2.6602 32 1 2.4367 3.3036 -3.1066 33 1 3.7967 5.1098 -3.5999 34 1 4.2899 4.7521 -1.9396 35 1 4.0246 7.1248 -2.3516 36 1 2.3178 6.8553 -2.7653 37 1 3.5297 6.0187 -0.0848 38 1 2.7488 7.5964 -0.3454 39 1 -1.5388 5.2649 1.5809 40 1 1.5368 4.3515 0.8991 41 1 0.2817 4.2307 -0.3475 42 1 2.3449 -0.0992 2.0276 43 1 1.3470 -1.5180 1.5645 44 1 3.4560 -2.4550 1.0603 45 1 4.2093 -0.8550 0.7961 46 1 3.5418 -2.1665 -1.4177 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034394852.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:17:35 Heat of formation + Delta-G solvation = -53.053654 kcal Electronic energy + Delta-G solvation = -27569.770387 eV Core-core repulsion = 23880.612928 eV Total energy + Delta-G solvation = -3689.157459 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.18770 -38.98661 -37.61250 -36.38142 -34.36777 -33.56614 -33.19086 -30.74581 -29.97369 -28.70215 -26.07979 -25.53006 -24.26047 -23.47575 -22.16456 -21.52068 -20.11885 -19.25813 -19.01894 -17.57590 -17.31525 -16.62556 -15.72555 -15.44738 -15.22847 -14.99258 -14.37989 -14.20586 -14.04641 -13.79356 -13.74678 -13.33282 -13.22800 -12.80819 -12.71014 -12.40439 -12.36122 -12.23232 -12.05530 -11.49718 -11.32828 -11.21456 -11.08906 -10.97134 -10.67857 -10.40451 -10.20850 -10.14279 -9.99441 -9.93063 -9.76538 -9.51338 -9.42775 -9.28215 -8.52241 -8.35482 -6.62244 -5.74299 -3.18839 2.30127 2.82485 3.16574 3.37721 3.46160 3.48049 3.55818 4.11787 4.27504 4.52052 4.61331 4.87587 4.95479 5.18842 5.27345 5.33895 5.37436 5.49970 5.61025 5.65108 5.67668 5.75041 5.76797 5.93977 5.96961 6.06469 6.09211 6.23755 6.36939 6.51091 6.53885 6.64512 6.69310 6.70164 6.75459 6.82706 6.93527 7.00370 7.13688 7.40525 7.77466 7.85771 7.91484 8.03760 8.49005 8.54237 9.26693 9.93840 10.39132 11.32108 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.015561 B = 0.004691 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.902590 B = 5967.486204 C = 6839.012559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.119 4.119 3 C 0.534 3.466 4 O -0.531 6.531 5 N -0.706 5.706 6 C 0.119 3.881 7 H 0.073 0.927 8 C -0.117 4.117 9 C -0.098 4.098 10 C -0.147 4.147 11 C 0.155 3.845 12 N -0.587 5.587 13 C -0.257 4.257 14 H 0.066 0.934 15 C 0.005 3.995 16 N -0.900 5.900 17 Si 0.898 3.102 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.291 1.291 21 C 0.176 3.824 22 C -0.117 4.117 23 C 0.100 3.900 24 N -0.729 5.729 25 C 0.533 3.467 26 O -0.521 6.521 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.400 0.600 31 H 0.082 0.918 32 H 0.051 0.949 33 H 0.044 0.956 34 H 0.048 0.952 35 H 0.047 0.953 36 H 0.061 0.939 37 H 0.032 0.968 38 H 0.046 0.954 39 H 0.252 0.748 40 H 0.031 0.969 41 H 0.078 0.922 42 H 0.112 0.888 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.111 -14.321 -2.496 16.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.126 4.126 3 C 0.317 3.683 4 O -0.408 6.408 5 N -0.356 5.356 6 C 0.014 3.986 7 H 0.091 0.909 8 C -0.155 4.155 9 C -0.136 4.136 10 C -0.188 4.188 11 C 0.027 3.973 12 N -0.309 5.309 13 C -0.387 4.387 14 H 0.084 0.916 15 C -0.194 4.194 16 N -0.545 5.545 17 Si 0.728 3.272 18 H -0.203 1.203 19 H -0.216 1.216 20 H -0.218 1.218 21 C 0.050 3.950 22 C -0.155 4.155 23 C -0.025 4.025 24 N -0.385 5.385 25 C 0.318 3.682 26 O -0.396 6.396 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.235 0.765 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.050 0.950 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.050 0.950 41 H 0.096 0.904 42 H 0.130 0.870 43 H 0.107 0.893 44 H 0.100 0.900 45 H 0.096 0.904 46 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 7.232 -13.948 -2.249 15.872 hybrid contribution -0.948 -0.133 -0.780 1.235 sum 6.284 -14.081 -3.029 15.714 Atomic orbital electron populations 1.21678 0.89513 1.03121 1.04310 1.21652 0.99726 0.94703 0.96543 1.19518 0.80740 0.85556 0.82500 1.90687 1.37560 1.77014 1.35500 1.46136 1.51650 1.12775 1.25028 1.21856 0.99397 0.80112 0.97237 0.90908 1.21316 1.00817 0.98184 0.95144 1.20218 0.97286 0.96250 0.99824 1.21502 1.00143 0.95503 1.01622 1.20735 0.87800 0.96905 0.91898 1.43543 1.01179 1.03608 1.82522 1.19247 0.89994 1.07056 1.22429 0.91579 1.25043 0.99062 0.99360 0.95932 1.70099 1.27144 1.35899 1.21311 0.86288 0.84364 0.78675 0.77842 1.20289 1.21650 1.21770 1.21301 0.97571 0.81308 0.94868 1.22763 0.96349 0.99294 0.97108 1.22201 0.99092 1.01498 0.79661 1.46147 1.37131 1.44056 1.11152 1.20404 0.79474 0.79411 0.88913 1.90755 1.61247 1.66274 1.21353 0.90903 0.91400 0.90324 0.76494 0.89985 0.93040 0.93706 0.93311 0.93473 0.92061 0.94967 0.93560 0.93791 0.95038 0.90398 0.87002 0.89298 0.89993 0.90433 0.75039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.58 8.31 37.16 0.31 -1.27 16 2 C -0.12 -1.58 0.74 -155.67 -0.12 -1.70 16 3 C 0.53 9.19 6.52 -10.99 -0.07 9.11 16 4 O -0.53 -10.62 15.12 5.56 0.08 -10.54 16 5 N -0.71 -12.47 4.83 -54.29 -0.26 -12.73 16 6 C 0.12 2.34 2.28 -68.42 -0.16 2.19 16 7 H 0.07 1.52 6.73 -51.93 -0.35 1.17 16 8 C -0.12 -2.09 5.07 -27.94 -0.14 -2.23 16 9 C -0.10 -1.63 5.16 -29.79 -0.15 -1.79 16 10 C -0.15 -2.63 5.73 -28.59 -0.16 -2.79 16 11 C 0.15 3.28 5.65 -4.09 -0.02 3.25 16 12 N -0.59 -14.52 2.27 -172.09 -0.39 -14.91 16 13 C -0.26 -6.95 9.44 -15.06 -0.14 -7.10 16 14 H 0.07 1.77 7.88 -52.49 -0.41 1.35 16 15 C 0.00 0.13 4.87 -17.43 -0.08 0.04 16 16 N -0.90 -26.03 11.01 55.49 0.61 -25.41 16 17 Si 0.90 21.60 29.58 -169.99 -5.03 16.58 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 21 C 0.18 4.25 4.26 -2.94 -0.01 4.23 16 22 C -0.12 -1.20 6.06 -24.91 -0.15 -1.35 16 23 C 0.10 0.85 7.79 -2.94 -0.02 0.82 16 24 N -0.73 -7.29 6.24 -59.01 -0.37 -7.66 16 25 C 0.53 7.17 7.13 -10.86 -0.08 7.09 16 26 O -0.52 -8.48 17.83 5.56 0.10 -8.38 16 27 H 0.07 0.96 7.59 -51.93 -0.39 0.57 16 28 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.40 6.59 7.96 -40.82 -0.32 6.27 16 31 H 0.08 1.64 7.48 -51.93 -0.39 1.25 16 32 H 0.05 0.83 7.95 -51.93 -0.41 0.42 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.80 7.35 -51.93 -0.38 0.42 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.03 0.67 8.06 -51.93 -0.42 0.25 16 38 H 0.05 0.99 7.99 -51.93 -0.41 0.57 16 39 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.03 0.88 8.03 -51.93 -0.42 0.46 16 41 H 0.08 2.07 6.31 -51.92 -0.33 1.74 16 42 H 0.11 1.30 6.94 -51.93 -0.36 0.94 16 43 H 0.09 0.70 7.91 -51.93 -0.41 0.29 16 44 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.41 3.25 8.96 -40.82 -0.37 2.88 16 LS Contribution 359.65 15.07 5.42 5.42 Total: -1.00 -32.45 359.65 -8.32 -40.77 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -7.47 Total: 8.35 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: -1.01 Total: 8.52 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: -0.41 Total: -60.72 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: 0.18 Total: -18.92 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.45 -8.32 -40.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034394852.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.285 kcal (2) G-P(sol) polarization free energy of solvation -32.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds