Wall clock time and date at job start Fri Apr 10 2020 22:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86806 * 120.00048 * 2 1 4 4 H 1.48495 * 109.46875 * 239.99834 * 3 2 1 5 5 H 1.48497 * 109.46858 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46762 * 119.99676 * 3 2 1 7 7 C 1.38809 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99943 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00521 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00559 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.46884 * 34.99358 * 10 9 7 12 12 C 1.52991 * 109.47439 * 154.99509 * 10 9 7 13 13 C 1.52997 * 109.47444 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47222 * 300.00345 * 13 12 10 15 15 H 1.09002 * 109.47004 * 299.99427 * 14 13 12 16 16 N 1.46495 * 109.47347 * 179.97438 * 14 13 12 17 17 C 1.34780 * 120.00132 * 154.99919 * 16 14 13 18 18 O 1.21278 * 119.99794 * 359.97438 * 17 16 14 19 19 C 1.50696 * 120.00100 * 179.97438 * 17 16 14 20 20 H 1.08995 * 109.40536 * 299.82822 * 19 17 16 21 21 C 1.53069 * 109.40253 * 179.97438 * 19 17 16 22 22 C 1.53348 * 108.45717 * 191.03629 * 21 19 17 23 23 C 1.53011 * 108.62280 * 67.52170 * 22 21 19 24 24 N 1.45758 * 110.50255 * 309.24856 * 23 22 21 25 25 C 1.33351 * 124.10581 * 19.10969 * 24 23 22 26 26 O 1.21283 * 118.24615 * 177.77892 * 25 24 23 27 27 C 1.53000 * 109.47365 * 59.99356 * 14 13 12 28 28 C 1.53001 * 109.47223 * 300.00259 * 27 14 13 29 29 H 0.97005 * 119.99602 * 0.02562 * 1 2 3 30 30 H 0.97004 * 119.99464 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47206 * 60.00047 * 12 10 9 32 32 H 1.09001 * 109.47245 * 299.99876 * 12 10 9 33 33 H 1.08998 * 109.47627 * 179.97438 * 13 12 10 34 34 H 1.09000 * 109.47160 * 59.99853 * 13 12 10 35 35 H 0.97002 * 120.00441 * 334.99660 * 16 14 13 36 36 H 1.09002 * 109.67457 * 310.79245 * 21 19 17 37 37 H 1.09004 * 109.67157 * 71.28914 * 21 19 17 38 38 H 1.08996 * 109.60494 * 187.30428 * 22 21 19 39 39 H 1.08995 * 109.60644 * 307.80001 * 22 21 19 40 40 H 1.08999 * 109.28483 * 188.93875 * 23 22 21 41 41 H 1.09001 * 109.13251 * 69.46411 * 23 22 21 42 42 H 0.96999 * 117.94401 * 199.08515 * 24 23 22 43 43 H 1.09002 * 109.47002 * 60.00069 * 27 14 13 44 44 H 1.09001 * 109.47418 * 180.02562 * 27 14 13 45 45 H 1.09000 * 109.47474 * 299.99954 * 28 27 14 46 46 H 1.09003 * 109.47029 * 179.97438 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9688 -3.5505 0.5899 12 6 1.1810 -4.7521 0.6102 13 6 1.9457 -6.0772 0.6096 14 6 2.3090 -6.4558 -0.8276 15 1 1.3980 -6.5618 -1.4167 16 7 3.0417 -7.7243 -0.8281 17 6 3.0326 -8.5074 -1.9250 18 8 2.4174 -8.1621 -2.9115 19 6 3.7868 -9.8121 -1.9258 20 1 4.8452 -9.6186 -1.7510 21 6 3.6123 -10.4995 -3.2822 22 6 4.1454 -11.9331 -3.1721 23 6 3.2305 -12.7240 -2.2347 24 7 3.0319 -12.0007 -0.9849 25 6 3.2545 -10.6946 -0.8334 26 8 3.0148 -10.1928 0.2444 27 6 3.1861 -5.3605 -1.4373 28 6 2.4213 -4.0353 -1.4368 29 1 -0.4850 0.8401 -0.0004 30 1 0.3556 -2.3880 0.0005 31 1 0.2702 -4.8584 0.0209 32 1 0.9219 -4.4822 1.6340 33 1 1.3210 -6.8575 1.0444 34 1 2.8567 -5.9713 1.1987 35 1 3.5335 -8.0008 -0.0390 36 1 2.5559 -10.5204 -3.5499 37 1 4.1731 -9.9570 -4.0434 38 1 4.1504 -12.3982 -4.1578 39 1 5.1574 -11.9170 -2.7675 40 1 3.6833 -13.6925 -2.0223 41 1 2.2666 -12.8757 -2.7203 42 1 2.7178 -12.5006 -0.2154 43 1 4.0971 -5.2545 -0.8482 44 1 3.4446 -5.6300 -2.4614 45 1 1.5103 -4.1412 -2.0258 46 1 3.0464 -3.2549 -1.8708 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034668359.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:18:13 Heat of formation + Delta-G solvation = -83.688578 kcal Electronic energy + Delta-G solvation = -25991.051508 eV Core-core repulsion = 22300.565619 eV Total energy + Delta-G solvation = -3690.485889 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.23361 -39.41820 -37.87556 -36.92343 -34.75137 -33.53673 -32.85543 -30.80115 -30.31389 -30.11238 -27.36522 -25.32888 -23.50070 -23.20572 -22.27998 -21.38337 -20.48939 -19.71726 -19.21721 -17.90270 -17.36538 -16.91281 -16.82269 -16.06531 -15.51566 -15.02243 -14.94054 -14.61792 -14.24331 -14.08720 -13.92602 -13.67484 -13.59949 -13.41017 -12.90045 -12.52333 -12.41976 -11.93829 -11.90420 -11.81645 -11.69783 -11.48346 -11.35412 -10.95205 -10.75002 -10.68337 -10.60899 -10.24128 -10.16001 -10.01521 -9.86175 -9.67435 -9.57222 -9.51144 -8.85710 -8.76867 -6.87968 -5.69919 -2.98083 2.05613 2.45179 2.90360 3.18634 3.48143 3.52255 3.53414 4.03624 4.16656 4.22120 4.28517 4.64258 4.71922 4.80025 4.81779 5.01751 5.08882 5.17159 5.22959 5.33114 5.40120 5.51565 5.59028 5.71533 5.76916 5.78465 5.84352 5.94870 5.98067 6.11433 6.26434 6.35877 6.38064 6.41279 6.56024 6.66543 6.74778 6.77431 6.80606 7.06848 7.22798 7.55329 7.72520 7.75715 8.21528 8.49159 9.59748 10.19210 10.53893 11.52897 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.038529 B = 0.002471 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.551793 B =11330.347999 C =11657.320604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.235 4.235 8 H 0.069 0.931 9 N -0.726 5.726 10 C 0.177 3.823 11 H 0.046 0.954 12 C -0.120 4.120 13 C -0.118 4.118 14 C 0.145 3.855 15 H 0.085 0.915 16 N -0.706 5.706 17 C 0.527 3.473 18 O -0.536 6.536 19 C -0.128 4.128 20 H 0.130 0.870 21 C -0.106 4.106 22 C -0.138 4.138 23 C 0.106 3.894 24 N -0.716 5.716 25 C 0.529 3.471 26 O -0.542 6.542 27 C -0.123 4.123 28 C -0.131 4.131 29 H 0.255 0.745 30 H 0.383 0.617 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.406 0.594 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.403 0.597 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.056 0.944 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.536 -29.655 -4.413 31.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.367 4.367 8 H 0.087 0.913 9 N -0.366 5.366 10 C 0.067 3.933 11 H 0.064 0.936 12 C -0.159 4.159 13 C -0.156 4.156 14 C 0.041 3.959 15 H 0.103 0.897 16 N -0.357 5.357 17 C 0.311 3.689 18 O -0.413 6.413 19 C -0.152 4.152 20 H 0.147 0.853 21 C -0.144 4.144 22 C -0.176 4.176 23 C -0.018 4.018 24 N -0.368 5.368 25 C 0.315 3.685 26 O -0.419 6.419 27 C -0.162 4.162 28 C -0.172 4.172 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.242 0.758 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.109 0.891 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.239 0.761 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.149 -28.841 -4.727 30.624 hybrid contribution 0.377 0.487 0.524 0.809 sum 9.526 -28.354 -4.203 30.205 Atomic orbital electron populations 1.69659 1.05075 1.25640 1.57918 1.24739 0.95508 0.97628 1.03275 0.86282 0.78507 0.83712 0.77789 1.21344 1.21758 1.21340 1.19203 0.90929 0.84197 1.42351 0.91305 1.42431 1.05791 0.99805 1.88560 1.20242 0.94304 0.85945 0.92780 0.93605 1.21753 0.98911 0.93515 1.01712 1.21725 1.00911 0.98124 0.94861 1.21121 0.95409 0.81792 0.97583 0.89650 1.46183 1.52409 1.21121 1.15989 1.19723 0.81138 0.84520 0.83560 1.90729 1.43399 1.73728 1.33451 1.21501 1.02987 0.94098 0.96620 0.85281 1.21525 1.03946 0.94410 0.94535 1.21952 0.99426 0.95710 1.00516 1.21485 1.00327 0.95315 0.84655 1.45362 1.68166 1.08732 1.14569 1.19613 0.77550 0.82569 0.88774 1.90777 1.51757 1.72312 1.27076 1.21900 0.98623 0.95396 1.00310 1.22216 0.99738 0.94465 1.00809 0.93545 0.78318 0.92049 0.91399 0.91767 0.91598 0.75781 0.89791 0.89621 0.89078 0.90735 0.90201 0.91261 0.76117 0.92308 0.92425 0.92517 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.82 13.06 55.49 0.72 -28.10 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 22.85 29.55 -169.99 -5.02 17.82 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.24 -6.67 9.93 -15.06 -0.15 -6.82 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 9 N -0.73 -18.67 5.12 -53.43 -0.27 -18.94 16 10 C 0.18 3.61 2.77 -67.93 -0.19 3.43 16 11 H 0.05 0.95 8.08 -51.93 -0.42 0.54 16 12 C -0.12 -2.07 5.39 -26.74 -0.14 -2.21 16 13 C -0.12 -1.69 5.39 -26.73 -0.14 -1.83 16 14 C 0.14 2.14 2.45 -67.93 -0.17 1.98 16 15 H 0.09 1.44 7.58 -51.93 -0.39 1.04 16 16 N -0.71 -9.15 4.56 -53.81 -0.25 -9.40 16 17 C 0.53 6.87 7.03 -10.99 -0.08 6.80 16 18 O -0.54 -8.79 15.46 5.56 0.09 -8.70 16 19 C -0.13 -1.13 2.79 -93.14 -0.26 -1.39 16 20 H 0.13 0.86 8.14 -51.93 -0.42 0.44 16 21 C -0.11 -0.74 4.78 -26.52 -0.13 -0.87 16 22 C -0.14 -0.50 6.03 -26.55 -0.16 -0.66 16 23 C 0.11 0.37 7.17 -4.44 -0.03 0.34 16 24 N -0.72 -4.48 5.45 -61.33 -0.33 -4.81 16 25 C 0.53 5.00 7.28 -11.87 -0.09 4.92 16 26 O -0.54 -6.89 15.53 5.55 0.09 -6.80 16 27 C -0.12 -1.94 5.49 -26.73 -0.15 -2.08 16 28 C -0.13 -2.49 5.50 -26.73 -0.15 -2.64 16 29 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 30 H 0.38 10.49 7.80 -40.82 -0.32 10.17 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.41 4.76 7.23 -40.82 -0.30 4.47 16 36 H 0.08 0.73 7.72 -51.93 -0.40 0.33 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.07 0.23 8.12 -51.93 -0.42 -0.19 16 40 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 41 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 42 H 0.40 2.14 8.80 -40.82 -0.36 1.78 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 364.86 15.07 5.50 5.50 Total: -1.00 -34.77 364.86 -9.06 -43.83 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -7.65 Total: 11.22 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -1.92 Total: -1.61 kcal Atomic # 7 Polarization: -61.13 SS G_CDS: -0.13 Total: -61.25 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: 0.17 Total: -15.51 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.77 -9.06 -43.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034668359.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.858 kcal (2) G-P(sol) polarization free energy of solvation -34.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds