Wall clock time and date at job start Fri Apr 10 2020 22:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86809 * 119.99445 * 2 1 4 4 H 1.48506 * 109.46815 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46998 * 299.99565 * 3 2 1 6 6 H 1.48492 * 109.47251 * 59.99898 * 3 2 1 7 7 C 1.38804 * 120.00654 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00662 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99697 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00130 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47129 * 34.99299 * 10 9 7 12 12 C 1.52997 * 109.47473 * 154.99556 * 10 9 7 13 13 C 1.53000 * 109.47060 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47233 * 299.99657 * 13 12 10 15 15 H 1.09002 * 109.47075 * 300.00932 * 14 13 12 16 16 N 1.46492 * 109.47204 * 180.02562 * 14 13 12 17 17 C 1.34780 * 119.99930 * 155.00105 * 16 14 13 18 18 O 1.21284 * 120.00068 * 0.02562 * 17 16 14 19 19 C 1.50701 * 120.00162 * 179.97438 * 17 16 14 20 20 H 1.09000 * 109.40047 * 60.00243 * 19 17 16 21 21 C 1.53070 * 109.40281 * 179.82875 * 19 17 16 22 22 C 1.53342 * 108.42505 * 169.03117 * 21 19 17 23 23 C 1.52923 * 108.67364 * 292.46819 * 22 21 19 24 24 N 1.45756 * 110.48808 * 50.75298 * 23 22 21 25 25 C 1.33235 * 124.06968 * 340.84985 * 24 23 22 26 26 O 1.21283 * 118.15643 * 182.29317 * 25 24 23 27 27 C 1.52997 * 109.46817 * 60.00194 * 14 13 12 28 28 C 1.52999 * 109.46944 * 274.99901 * 10 9 7 29 29 H 0.96993 * 120.00293 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00379 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47153 * 59.99757 * 12 10 9 32 32 H 1.09001 * 109.46832 * 299.99948 * 12 10 9 33 33 H 1.08992 * 109.47399 * 59.99823 * 13 12 10 34 34 H 1.09004 * 109.46724 * 180.02562 * 13 12 10 35 35 H 0.96998 * 120.00353 * 335.00390 * 16 14 13 36 36 H 1.08997 * 109.67482 * 288.76634 * 21 19 17 37 37 H 1.08998 * 109.66992 * 49.29381 * 21 19 17 38 38 H 1.08995 * 109.60619 * 52.22278 * 22 21 19 39 39 H 1.08996 * 109.60381 * 172.55329 * 22 21 19 40 40 H 1.09000 * 109.30312 * 171.06876 * 23 22 21 41 41 H 1.09002 * 109.30433 * 290.65001 * 23 22 21 42 42 H 0.97000 * 117.95014 * 160.92597 * 24 23 22 43 43 H 1.09002 * 109.47153 * 60.00231 * 27 14 13 44 44 H 1.09001 * 109.47289 * 180.02562 * 27 14 13 45 45 H 1.09000 * 109.47486 * 59.99569 * 28 10 9 46 46 H 1.09002 * 109.46716 * 299.99651 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2126 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9690 -3.5504 0.5899 12 6 1.1812 -4.7521 0.6102 13 6 1.9466 -6.0769 0.6108 14 6 2.3109 -6.4561 -0.8261 15 1 1.4003 -6.5626 -1.4157 16 7 3.0431 -7.7248 -0.8256 17 6 3.0346 -8.5082 -1.9223 18 8 2.4210 -8.1626 -2.9097 19 6 3.7884 -9.8132 -1.9221 20 1 3.3972 -10.4572 -1.1344 21 6 3.6117 -10.5027 -3.2772 22 6 4.5962 -11.6757 -3.3562 23 6 6.0192 -11.1180 -3.4070 24 7 6.2295 -10.1577 -2.3309 25 6 5.2452 -9.5478 -1.6718 26 8 5.5429 -8.7349 -0.8224 27 6 3.1879 -5.3607 -1.4358 28 6 2.4221 -4.0355 -1.4365 29 1 -0.4850 0.8400 -0.0004 30 1 0.3557 -2.3881 0.0005 31 1 0.2704 -4.8584 0.0209 32 1 0.9221 -4.4822 1.6340 33 1 2.8571 -5.9703 1.2003 34 1 1.3215 -6.8574 1.0448 35 1 3.5342 -8.0012 -0.0360 36 1 2.5909 -10.8735 -3.3699 37 1 3.8196 -9.7944 -4.0791 38 1 4.4827 -12.3084 -2.4759 39 1 4.3976 -12.2600 -4.2546 40 1 6.7311 -11.9369 -3.3033 41 1 6.1778 -10.6219 -4.3645 42 1 7.1429 -9.9490 -2.0798 43 1 4.0985 -5.2540 -0.8462 44 1 3.4471 -5.6305 -2.4596 45 1 3.0469 -3.2551 -1.8709 46 1 1.5113 -4.1418 -2.0258 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034668364.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:18:17 Heat of formation + Delta-G solvation = -83.567080 kcal Electronic energy + Delta-G solvation = -26079.910350 eV Core-core repulsion = 22389.429729 eV Total energy + Delta-G solvation = -3690.480621 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.22731 -39.41236 -37.87176 -36.90638 -34.75073 -33.53232 -32.85495 -30.79478 -30.31018 -30.10102 -27.36451 -25.32557 -23.50170 -23.19351 -22.26895 -21.38903 -20.50456 -19.65497 -19.25867 -17.88636 -17.35514 -16.91568 -16.76472 -16.12264 -15.50067 -15.03381 -14.87413 -14.60494 -14.29217 -14.09162 -13.83556 -13.70227 -13.58877 -13.42085 -12.88743 -12.53113 -12.39554 -11.95185 -11.91675 -11.79399 -11.70371 -11.47931 -11.34264 -10.95399 -10.77001 -10.67377 -10.59312 -10.22721 -10.08976 -10.00667 -9.86896 -9.66546 -9.55163 -9.51052 -8.85500 -8.76950 -6.87353 -5.69890 -2.97872 2.07101 2.46503 2.93016 3.18177 3.47720 3.53421 3.55596 4.04369 4.17525 4.23237 4.28764 4.64687 4.72251 4.79934 4.82464 5.01494 5.09608 5.15372 5.23831 5.33186 5.40042 5.51000 5.59545 5.72085 5.78211 5.79536 5.83480 5.94377 5.98580 6.12723 6.28602 6.33987 6.37828 6.41477 6.59548 6.66437 6.75744 6.80109 6.82085 7.08202 7.23771 7.55474 7.75034 7.77746 8.21392 8.49285 9.60135 10.19342 10.54112 11.53105 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.029945 B = 0.002589 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.824292 B =10810.943719 C =11077.070641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.233 4.233 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.177 3.823 11 H 0.046 0.954 12 C -0.119 4.119 13 C -0.119 4.119 14 C 0.145 3.855 15 H 0.087 0.913 16 N -0.707 5.707 17 C 0.527 3.473 18 O -0.536 6.536 19 C -0.128 4.128 20 H 0.129 0.871 21 C -0.106 4.106 22 C -0.138 4.138 23 C 0.106 3.894 24 N -0.716 5.716 25 C 0.529 3.471 26 O -0.541 6.541 27 C -0.122 4.122 28 C -0.131 4.131 29 H 0.254 0.746 30 H 0.383 0.617 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.406 0.594 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.403 0.597 43 H 0.060 0.940 44 H 0.055 0.945 45 H 0.062 0.938 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.523 -29.187 -4.763 31.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.365 4.365 8 H 0.088 0.912 9 N -0.366 5.366 10 C 0.067 3.933 11 H 0.064 0.936 12 C -0.158 4.158 13 C -0.157 4.157 14 C 0.041 3.959 15 H 0.105 0.895 16 N -0.357 5.357 17 C 0.311 3.689 18 O -0.413 6.413 19 C -0.152 4.152 20 H 0.147 0.853 21 C -0.144 4.144 22 C -0.176 4.176 23 C -0.018 4.018 24 N -0.368 5.368 25 C 0.314 3.686 26 O -0.418 6.418 27 C -0.161 4.161 28 C -0.172 4.172 29 H 0.063 0.937 30 H 0.217 0.783 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.242 0.758 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.109 0.891 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.239 0.761 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.081 0.919 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.121 -28.401 -5.063 30.572 hybrid contribution 0.830 0.767 0.315 1.173 sum 10.951 -27.634 -4.748 30.102 Atomic orbital electron populations 1.69670 1.05071 1.25400 1.58169 1.24732 0.95508 0.97625 1.03337 0.86142 0.78808 0.84315 0.77121 1.20594 1.21955 1.21950 1.19302 0.91013 0.84171 1.41982 0.91188 1.42444 1.05782 0.99832 1.88541 1.20243 0.94305 0.85924 0.92828 0.93578 1.21744 0.98877 0.93508 1.01707 1.21745 1.00868 0.98163 0.94950 1.21124 0.95284 0.81999 0.97493 0.89538 1.46179 1.51902 1.21277 1.16350 1.19730 0.81103 0.84562 0.83549 1.90730 1.44078 1.73399 1.33100 1.21491 0.92957 0.98090 1.02631 0.85347 1.21525 1.00866 0.96991 0.95040 1.21926 0.93508 0.98149 1.03994 1.21472 0.98052 0.92012 0.90266 1.45342 1.09618 1.44541 1.37307 1.19569 0.87538 0.80439 0.81058 1.90789 1.83624 1.33758 1.33624 1.21879 0.98684 0.95233 1.00320 1.22225 0.99676 0.94571 1.00738 0.93658 0.78336 0.92002 0.91388 0.91454 0.91933 0.75806 0.89662 0.89762 0.90766 0.89094 0.90203 0.91256 0.76067 0.92168 0.92647 0.91901 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.88 13.06 55.49 0.72 -28.16 16 2 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 3 Si 0.90 22.99 29.55 -169.99 -5.02 17.97 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 6 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 7 C -0.23 -6.66 9.93 -15.06 -0.15 -6.81 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.73 -18.74 5.12 -53.43 -0.27 -19.01 16 10 C 0.18 3.64 2.77 -67.93 -0.19 3.46 16 11 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 12 C -0.12 -2.03 5.39 -26.73 -0.14 -2.17 16 13 C -0.12 -1.63 5.39 -26.73 -0.14 -1.78 16 14 C 0.14 2.14 2.45 -67.94 -0.17 1.97 16 15 H 0.09 1.41 7.58 -51.93 -0.39 1.01 16 16 N -0.71 -9.13 4.56 -53.81 -0.25 -9.37 16 17 C 0.53 6.86 7.02 -10.98 -0.08 6.79 16 18 O -0.54 -8.79 15.46 5.55 0.09 -8.70 16 19 C -0.13 -1.12 2.78 -93.14 -0.26 -1.38 16 20 H 0.13 0.82 8.14 -51.93 -0.42 0.40 16 21 C -0.11 -0.74 4.78 -26.52 -0.13 -0.87 16 22 C -0.14 -0.51 6.02 -26.59 -0.16 -0.67 16 23 C 0.11 0.40 7.17 -4.48 -0.03 0.36 16 24 N -0.72 -4.72 5.44 -61.41 -0.33 -5.05 16 25 C 0.53 5.14 7.27 -11.92 -0.09 5.06 16 26 O -0.54 -7.11 15.55 5.55 0.09 -7.02 16 27 C -0.12 -2.04 5.50 -26.70 -0.15 -2.19 16 28 C -0.13 -2.55 5.51 -26.70 -0.15 -2.70 16 29 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 30 H 0.38 10.47 7.80 -40.82 -0.32 10.15 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.41 4.74 7.25 -40.82 -0.30 4.44 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.74 7.72 -51.93 -0.40 0.34 16 38 H 0.07 0.23 8.12 -51.93 -0.42 -0.19 16 39 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 41 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.40 2.32 8.80 -40.82 -0.36 1.96 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 46 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 364.89 15.07 5.50 5.50 Total: -1.00 -35.09 364.89 -9.06 -44.15 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -7.65 Total: 11.21 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -1.92 Total: -1.51 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: -0.13 Total: -61.60 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: 0.17 Total: -15.72 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.09 -9.06 -44.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034668364.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.416 kcal (2) G-P(sol) polarization free energy of solvation -35.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds