Wall clock time and date at job start Fri Apr 10 2020 22:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 120.00157 * 2 1 4 4 H 1.48495 * 109.47180 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47010 * 300.00001 * 3 2 1 6 6 H 1.48500 * 109.47177 * 59.99890 * 3 2 1 7 7 C 1.38805 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00032 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99924 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00164 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.47081 * 325.00452 * 10 9 7 12 12 C 1.52998 * 109.46774 * 85.00001 * 10 9 7 13 13 C 1.52999 * 109.47098 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.47241 * 300.00055 * 13 12 10 15 15 H 1.08998 * 109.47260 * 300.00088 * 14 13 12 16 16 N 1.46492 * 109.47071 * 179.97438 * 14 13 12 17 17 C 1.34773 * 120.00035 * 85.00731 * 16 14 13 18 18 O 1.21291 * 119.99915 * 359.97438 * 17 16 14 19 19 C 1.50703 * 120.00486 * 179.97438 * 17 16 14 20 20 H 1.09001 * 109.60091 * 59.67421 * 19 17 16 21 21 C 1.53352 * 109.60428 * 179.97438 * 19 17 16 22 22 C 1.53064 * 108.42217 * 187.28961 * 21 19 17 23 23 C 1.50176 * 109.89282 * 311.09831 * 22 21 19 24 24 O 1.21284 * 118.24680 * 197.29935 * 23 22 21 25 25 N 1.33359 * 123.50823 * 17.58506 * 23 22 21 26 26 C 1.45756 * 124.10453 * 357.77900 * 25 23 22 27 27 C 1.53006 * 109.46707 * 59.99998 * 14 13 12 28 28 C 1.52998 * 109.47358 * 205.00479 * 10 9 7 29 29 H 0.97009 * 119.99495 * 359.97438 * 1 2 3 30 30 H 0.96996 * 119.99952 * 0.02562 * 9 7 2 31 31 H 1.08992 * 109.47711 * 300.00255 * 12 10 9 32 32 H 1.08998 * 109.46948 * 60.00369 * 12 10 9 33 33 H 1.08999 * 109.47643 * 180.02562 * 13 12 10 34 34 H 1.08998 * 109.47065 * 60.00262 * 13 12 10 35 35 H 0.97000 * 120.00540 * 264.99704 * 16 14 13 36 36 H 1.08995 * 109.66935 * 67.55638 * 21 19 17 37 37 H 1.08995 * 109.67350 * 307.02342 * 21 19 17 38 38 H 1.09000 * 109.39802 * 190.97333 * 22 21 19 39 39 H 1.08997 * 109.33372 * 71.18401 * 22 21 19 40 40 H 0.97002 * 117.94440 * 177.75115 * 25 23 22 41 41 H 1.09001 * 109.29565 * 258.76327 * 26 25 23 42 42 H 1.09002 * 109.13365 * 139.27583 * 26 25 23 43 43 H 1.08998 * 109.47188 * 60.00045 * 27 14 13 44 44 H 1.09000 * 109.46668 * 180.02562 * 27 14 13 45 45 H 1.08991 * 109.47367 * 59.99762 * 28 10 9 46 46 H 1.09001 * 109.46510 * 299.99922 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2126 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0579 -3.6568 -0.0017 11 1 2.9682 -3.5503 -0.5917 12 6 2.4228 -4.0362 1.4349 13 6 3.1883 -5.3610 1.4337 14 6 2.3111 -6.4564 0.8241 15 1 1.4008 -6.5633 1.4140 16 7 3.0443 -7.7246 0.8224 17 6 3.0369 -8.5087 1.9186 18 8 2.4235 -8.1641 2.9066 19 6 3.7906 -9.8137 1.9168 20 1 4.8481 -9.6249 1.7318 21 6 3.6221 -10.5071 3.2742 22 6 4.5401 -11.7314 3.3092 23 6 4.3571 -12.5433 2.0592 24 8 4.7536 -13.6895 2.0560 25 7 3.7868 -12.0697 0.9506 26 6 3.2304 -10.7282 0.8268 27 6 1.9462 -6.0769 -0.6126 28 6 1.1803 -4.7519 -0.6112 29 1 -0.4850 0.8402 0.0004 30 1 0.3555 -2.3880 -0.0005 31 1 3.0481 -3.2562 1.8691 32 1 1.5126 -4.1427 2.0249 33 1 3.4479 -5.6316 2.4572 34 1 4.0986 -5.2541 0.8438 35 1 3.5350 -8.0002 0.0324 36 1 2.5860 -10.8216 3.3994 37 1 3.8966 -9.8195 4.0741 38 1 4.2948 -12.3431 4.1774 39 1 5.5771 -11.4030 3.3791 40 1 3.7398 -12.6545 0.1782 41 1 2.1456 -10.7782 0.9209 42 1 3.4890 -10.3230 -0.1515 43 1 2.8565 -5.9700 -1.2025 44 1 1.3210 -6.8570 -1.0467 45 1 0.9203 -4.4815 -1.6345 46 1 0.2700 -4.8583 -0.0211 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034679665.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:18:24 Heat of formation + Delta-G solvation = -87.265214 kcal Electronic energy + Delta-G solvation = -25590.758067 eV Core-core repulsion = 21900.117084 eV Total energy + Delta-G solvation = -3690.640984 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.07282 -39.88791 -38.18026 -36.57346 -34.99417 -33.44971 -33.14839 -31.09231 -30.46994 -30.07635 -27.33632 -25.24677 -24.08281 -23.29122 -22.41190 -21.34892 -20.68124 -19.82682 -19.30092 -18.12519 -17.16413 -16.91891 -16.65078 -16.12873 -15.83422 -15.31856 -15.11824 -14.60322 -14.34681 -14.26500 -14.01730 -13.79342 -13.68874 -13.50658 -13.03700 -12.68056 -12.34390 -12.28013 -12.06618 -11.87360 -11.74432 -11.52786 -11.45273 -11.09609 -10.85986 -10.81826 -10.71431 -10.20166 -10.18680 -10.15525 -10.00644 -9.80430 -9.62358 -9.60633 -9.09122 -8.88259 -6.96328 -5.77746 -3.06330 2.20437 2.31865 2.74725 2.93418 3.41884 3.47510 3.49753 3.99518 4.09264 4.15170 4.25483 4.57415 4.69678 4.73764 4.80537 4.86491 4.93294 4.97869 5.14482 5.21410 5.33855 5.48247 5.52136 5.54686 5.62831 5.67135 5.70673 5.78889 5.81879 5.96957 6.17678 6.18576 6.24305 6.27089 6.41906 6.51291 6.58874 6.68016 6.80739 6.95023 7.11470 7.28276 7.69358 7.75103 7.98619 8.41143 9.52178 10.10604 10.44861 11.45021 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.042086 B = 0.002231 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.141703 B =12548.306139 C =12783.498594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.177 3.823 11 H 0.046 0.954 12 C -0.132 4.132 13 C -0.123 4.123 14 C 0.144 3.856 15 H 0.089 0.911 16 N -0.723 5.723 17 C 0.520 3.480 18 O -0.528 6.528 19 C -0.127 4.127 20 H 0.108 0.892 21 C -0.105 4.105 22 C -0.136 4.136 23 C 0.519 3.481 24 O -0.558 6.558 25 N -0.719 5.719 26 C 0.120 3.880 27 C -0.118 4.118 28 C -0.121 4.121 29 H 0.254 0.746 30 H 0.383 0.617 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.397 0.603 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.402 0.598 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.068 0.932 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.876 -23.248 0.510 24.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.366 5.366 10 C 0.067 3.933 11 H 0.064 0.936 12 C -0.173 4.173 13 C -0.163 4.163 14 C 0.040 3.960 15 H 0.107 0.893 16 N -0.374 5.374 17 C 0.305 3.695 18 O -0.404 6.404 19 C -0.149 4.149 20 H 0.126 0.874 21 C -0.143 4.143 22 C -0.176 4.176 23 C 0.307 3.693 24 O -0.436 6.436 25 N -0.371 5.371 26 C -0.005 4.005 27 C -0.157 4.157 28 C -0.160 4.160 29 H 0.064 0.936 30 H 0.217 0.783 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.231 0.769 36 H 0.097 0.903 37 H 0.109 0.891 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.238 0.762 41 H 0.093 0.907 42 H 0.102 0.898 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.757 -23.273 1.417 24.572 hybrid contribution 0.373 0.806 -0.712 1.138 sum 8.130 -22.467 0.705 23.903 Atomic orbital electron populations 1.69676 1.05089 1.25497 1.57877 1.24747 0.95520 0.97692 1.03154 0.86142 0.78769 0.84251 0.77180 1.20595 1.21914 1.21895 1.19278 0.90980 0.84139 1.42373 0.91184 1.42441 1.05803 0.99812 1.88555 1.20236 0.94275 0.85993 0.92773 0.93633 1.22227 0.99778 0.94492 1.00853 1.21894 0.98569 0.95408 1.00392 1.21156 0.95476 0.81716 0.97606 0.89334 1.46218 1.53206 1.22007 1.15942 1.20164 0.81070 0.84965 0.83344 1.90758 1.42876 1.73788 1.32951 1.21682 1.01926 0.93396 0.97849 0.87411 1.21510 1.00849 0.95965 0.95963 1.21700 1.02608 0.97145 0.96116 1.20288 0.76444 0.87508 0.85084 1.90778 1.49991 1.18924 1.83935 1.45423 1.60634 1.15749 1.15339 1.21308 0.98730 0.81784 0.98649 1.21759 1.00827 0.98329 0.94789 1.21763 0.98945 0.93449 1.01816 0.93588 0.78305 0.91798 0.92479 0.92381 0.92310 0.76885 0.90260 0.89130 0.87553 0.87904 0.76192 0.90704 0.89767 0.91554 0.91874 0.91343 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.95 13.06 55.49 0.72 -27.23 16 2 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 7 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.73 -17.68 5.12 -53.43 -0.27 -17.95 16 10 C 0.18 3.29 2.77 -67.93 -0.19 3.11 16 11 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 12 C -0.13 -2.29 5.50 -26.73 -0.15 -2.43 16 13 C -0.12 -1.66 5.49 -26.73 -0.15 -1.81 16 14 C 0.14 1.64 2.45 -67.93 -0.17 1.47 16 15 H 0.09 1.21 7.58 -51.93 -0.39 0.81 16 16 N -0.72 -5.90 4.99 -53.80 -0.27 -6.17 16 17 C 0.52 4.81 7.10 -10.99 -0.08 4.73 16 18 O -0.53 -7.28 15.56 5.55 0.09 -7.19 16 19 C -0.13 -0.74 2.60 -91.63 -0.24 -0.98 16 20 H 0.11 0.48 8.12 -51.93 -0.42 0.06 16 21 C -0.10 -0.69 4.71 -26.52 -0.12 -0.81 16 22 C -0.14 -0.84 6.03 -28.10 -0.17 -1.01 16 23 C 0.52 4.41 7.71 -11.87 -0.09 4.32 16 24 O -0.56 -7.14 17.78 5.55 0.10 -7.04 16 25 N -0.72 -4.21 5.45 -61.39 -0.33 -4.55 16 26 C 0.12 0.53 6.33 -4.49 -0.03 0.50 16 27 C -0.12 -1.27 5.39 -26.70 -0.14 -1.42 16 28 C -0.12 -1.80 5.39 -26.71 -0.14 -1.94 16 29 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.38 9.98 7.80 -40.82 -0.32 9.66 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.40 2.01 8.29 -40.82 -0.34 1.67 16 36 H 0.08 0.59 8.13 -51.93 -0.42 0.16 16 37 H 0.09 0.66 7.90 -51.93 -0.41 0.25 16 38 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.40 2.00 8.80 -40.82 -0.36 1.64 16 41 H 0.07 0.36 8.11 -51.93 -0.42 -0.06 16 42 H 0.08 0.18 7.89 -51.93 -0.41 -0.23 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 368.00 15.07 5.55 5.55 Total: -1.00 -34.76 368.00 -9.04 -43.80 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -7.69 Total: 7.00 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -1.91 Total: -3.39 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: -0.15 Total: -55.89 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: 0.19 Total: -14.24 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.76 -9.04 -43.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034679665.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.463 kcal (2) G-P(sol) polarization free energy of solvation -34.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds