Wall clock time and date at job start Fri Apr 10 2020 22:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 110.85721 * 2 1 4 4 O 1.21280 * 120.00043 * 120.70168 * 3 2 1 5 5 N 1.34774 * 119.99937 * 300.70151 * 3 2 1 6 6 C 1.46499 * 120.00045 * 179.97438 * 5 3 2 7 7 H 1.08995 * 109.47256 * 325.00059 * 6 5 3 8 8 C 1.53001 * 109.47056 * 85.00147 * 6 5 3 9 9 C 1.53005 * 109.46991 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47443 * 300.00004 * 9 8 6 11 11 H 1.08995 * 109.46954 * 300.00134 * 10 9 8 12 12 N 1.46494 * 109.46915 * 179.97438 * 10 9 8 13 13 C 1.36945 * 119.99612 * 85.00420 * 12 10 9 14 14 H 1.07999 * 120.00077 * 359.97438 * 13 12 10 15 15 C 1.38812 * 119.99637 * 179.97438 * 13 12 10 16 16 N 1.31617 * 120.00227 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99854 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47057 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47102 * 119.99824 * 17 15 13 20 20 H 1.48500 * 109.47389 * 240.00173 * 17 15 13 21 21 C 1.52999 * 109.46922 * 59.99644 * 10 9 8 22 22 C 1.52997 * 109.47524 * 300.00501 * 21 10 9 23 23 C 1.54484 * 110.96973 * 236.20936 * 2 1 3 24 24 N 1.46861 * 105.42737 * 216.43926 * 23 2 1 25 25 C 1.34421 * 111.30936 * 17.02133 * 24 23 2 26 26 O 1.21278 * 124.94329 * 179.62374 * 25 24 23 27 27 C 1.51288 * 110.11586 * 359.58484 * 25 24 23 28 28 H 1.08997 * 109.46959 * 59.30178 * 1 2 3 29 29 H 1.08996 * 109.46887 * 179.29625 * 1 2 3 30 30 H 1.08999 * 109.46885 * 299.29658 * 1 2 3 31 31 H 0.97002 * 120.00259 * 0.02562 * 5 3 2 32 32 H 1.08998 * 109.46936 * 299.99978 * 8 6 5 33 33 H 1.09000 * 109.47570 * 60.00064 * 8 6 5 34 34 H 1.08996 * 109.46814 * 179.97438 * 9 8 6 35 35 H 1.09005 * 109.46675 * 60.00202 * 9 8 6 36 36 H 0.96995 * 120.00290 * 265.27311 * 12 10 9 37 37 H 0.97005 * 120.00046 * 179.97438 * 16 15 13 38 38 H 1.09000 * 109.47317 * 60.00250 * 21 10 9 39 39 H 1.08997 * 109.47351 * 180.02562 * 21 10 9 40 40 H 1.09004 * 109.47610 * 180.02562 * 22 21 10 41 41 H 1.09005 * 109.46516 * 299.99717 * 22 21 10 42 42 H 1.09000 * 110.24731 * 335.43089 * 23 2 1 43 43 H 1.09003 * 110.24266 * 97.42663 * 23 2 1 44 44 H 0.96998 * 124.34377 * 197.02508 * 24 23 2 45 45 H 1.09000 * 110.48860 * 225.06832 * 27 25 24 46 46 H 1.08998 * 110.48295 * 102.42134 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0666 1.4083 0.0000 4 8 2.7836 1.7840 0.9031 5 7 1.7496 2.2501 -1.0036 6 6 2.2707 3.6193 -1.0033 7 1 2.3277 3.9862 0.0214 8 6 3.6671 3.6336 -1.6286 9 6 4.2111 5.0637 -1.6289 10 6 3.2789 5.9639 -2.4422 11 1 3.2219 5.5966 -3.4668 12 7 3.7995 7.3332 -2.4419 13 6 4.7454 7.7062 -3.3593 14 1 5.1078 6.9908 -4.0826 15 6 5.2383 9.0039 -3.3593 16 7 4.7970 9.8756 -2.4774 17 14 6.5291 9.5126 -4.6102 18 1 6.8551 8.3564 -5.4832 19 1 6.0025 10.6258 -5.4401 20 1 7.7553 9.9600 -3.9021 21 6 1.8825 5.9495 -1.8170 22 6 1.3385 4.5195 -1.8167 23 6 2.0829 -0.8023 -1.1988 24 7 3.2862 -1.4773 -0.6956 25 6 3.3093 -1.4971 0.6482 26 8 4.1857 -1.9977 1.3206 27 6 2.0834 -0.8030 1.2000 28 1 -0.3633 0.5246 -0.8836 29 1 -0.3633 -1.0276 -0.0126 30 1 -0.3633 0.5029 0.8962 31 1 1.1758 1.9497 -1.7257 32 1 4.3311 2.9920 -1.0494 33 1 3.6102 3.2668 -2.6534 34 1 5.2060 5.0738 -2.0739 35 1 4.2680 5.4309 -0.6041 36 1 3.4771 7.9745 -1.7895 37 1 5.1418 10.7823 -2.4773 38 1 1.9394 6.3167 -0.7923 39 1 1.2182 6.5904 -2.3967 40 1 0.3435 4.5093 -1.3717 41 1 1.2816 4.1523 -2.8414 42 1 1.3494 -1.5367 -1.5317 43 1 2.3413 -0.1290 -2.0162 44 1 3.9757 -1.8598 -1.2605 45 1 2.3587 -0.1320 2.0137 46 1 1.3508 -1.5352 1.5393 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034698228.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:18:28 Heat of formation + Delta-G solvation = -79.057597 kcal Electronic energy + Delta-G solvation = -26139.999157 eV Core-core repulsion = 22449.714082 eV Total energy + Delta-G solvation = -3690.285075 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.40305 -39.56206 -38.07098 -36.68196 -34.97248 -33.48435 -32.84553 -30.66788 -30.44663 -28.82214 -27.42086 -26.60920 -24.10762 -23.06230 -22.34101 -21.06134 -20.87040 -20.11527 -19.31733 -17.94191 -17.32578 -16.99172 -16.34242 -15.84279 -15.44909 -15.21869 -14.98254 -14.37777 -14.28502 -14.02045 -13.83314 -13.66643 -13.59107 -13.21759 -13.13742 -12.83562 -12.65194 -12.44750 -12.09339 -11.98551 -11.84928 -11.54171 -11.46384 -11.08517 -10.84849 -10.80353 -10.69844 -10.19234 -10.15205 -10.13013 -10.00315 -9.78941 -9.61472 -9.48867 -9.06722 -8.86959 -6.95089 -5.76504 -3.05073 2.29810 2.39191 2.85628 2.98360 3.42926 3.48513 3.50766 3.73060 3.93909 4.11014 4.40882 4.58835 4.62940 4.83684 4.85930 4.95781 4.99259 5.12933 5.14245 5.23528 5.26720 5.49325 5.52683 5.56387 5.56897 5.64319 5.68770 5.80562 5.83395 5.98701 6.19320 6.20292 6.25501 6.41241 6.43428 6.52783 6.60557 6.63701 6.69625 6.96311 7.12867 7.30314 7.70502 7.93043 8.01395 8.42353 9.53403 10.11872 10.46162 11.46297 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.025191 B = 0.002700 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.244845 B =10369.346413 C =10893.458473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.099 4.099 3 C 0.524 3.476 4 O -0.526 6.526 5 N -0.720 5.720 6 C 0.145 3.855 7 H 0.088 0.912 8 C -0.123 4.123 9 C -0.133 4.133 10 C 0.178 3.822 11 H 0.046 0.954 12 N -0.726 5.726 13 C -0.237 4.237 14 H 0.070 0.930 15 C -0.015 4.015 16 N -0.933 5.933 17 Si 0.905 3.095 18 H -0.281 1.281 19 H -0.292 1.292 20 H -0.292 1.292 21 C -0.121 4.121 22 C -0.118 4.118 23 C 0.114 3.886 24 N -0.734 5.734 25 C 0.525 3.475 26 O -0.530 6.530 27 C -0.140 4.140 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.397 0.603 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.383 0.617 37 H 0.254 0.746 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.412 0.588 45 H 0.121 0.879 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.186 -23.172 1.418 27.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.103 4.103 3 C 0.308 3.692 4 O -0.401 6.401 5 N -0.371 5.371 6 C 0.041 3.959 7 H 0.106 0.894 8 C -0.162 4.162 9 C -0.174 4.174 10 C 0.068 3.932 11 H 0.064 0.936 12 N -0.366 5.366 13 C -0.368 4.368 14 H 0.088 0.912 15 C -0.211 4.211 16 N -0.581 5.581 17 Si 0.736 3.264 18 H -0.206 1.206 19 H -0.219 1.219 20 H -0.219 1.219 21 C -0.160 4.160 22 C -0.156 4.156 23 C -0.011 4.011 24 N -0.391 5.391 25 C 0.312 3.688 26 O -0.406 6.406 27 C -0.180 4.180 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.231 0.769 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.217 0.783 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.251 0.749 45 H 0.139 0.861 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -13.163 -23.061 2.362 26.658 hybrid contribution 0.716 0.312 -1.175 1.411 sum -12.446 -22.749 1.186 25.959 Atomic orbital electron populations 1.21782 0.90196 1.03558 1.03654 1.21768 0.98382 0.93199 0.96950 1.20034 0.80587 0.86369 0.82174 1.90756 1.36403 1.76907 1.36025 1.46108 1.51997 1.13503 1.25461 1.21155 0.93768 0.79676 1.01271 0.89356 1.21888 0.95321 0.98941 1.00076 1.22236 1.00806 0.92793 1.01544 1.20228 0.89988 0.86734 0.96265 0.93621 1.42440 1.48194 1.06762 1.39193 1.19280 1.14066 0.94846 1.08617 0.91195 1.24741 1.00590 0.96413 0.99310 1.69670 1.46509 1.04448 1.37505 0.86146 0.81355 0.78179 0.80691 1.20593 1.21909 1.21891 1.21755 0.98148 0.94305 1.01762 1.21745 0.97996 0.96053 0.99840 1.22170 0.87452 0.95930 0.95564 1.46212 1.24750 1.60277 1.07858 1.20818 0.87232 0.78320 0.82445 1.90765 1.40112 1.47027 1.62680 1.22405 0.96621 1.00167 0.98856 0.91185 0.90736 0.90904 0.76891 0.92486 0.92362 0.91813 0.92484 0.78300 0.93582 0.91950 0.91315 0.91826 0.91572 0.89576 0.89717 0.74895 0.86122 0.86990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.46 8.38 37.16 0.31 -0.15 16 2 C -0.10 -0.65 0.84 -154.02 -0.13 -0.78 16 3 C 0.52 5.44 6.48 -10.99 -0.07 5.37 16 4 O -0.53 -8.08 15.17 5.56 0.08 -8.00 16 5 N -0.72 -6.32 4.79 -53.81 -0.26 -6.58 16 6 C 0.14 1.73 2.46 -67.93 -0.17 1.57 16 7 H 0.09 1.27 7.58 -51.93 -0.39 0.88 16 8 C -0.12 -1.74 5.50 -26.73 -0.15 -1.88 16 9 C -0.13 -2.37 5.50 -26.73 -0.15 -2.52 16 10 C 0.18 3.36 2.77 -67.93 -0.19 3.18 16 11 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 12 N -0.73 -17.89 5.12 -53.43 -0.27 -18.16 16 13 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 14 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 15 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 16 N -0.93 -28.16 13.06 55.49 0.72 -27.44 16 17 Si 0.90 22.37 29.55 -169.99 -5.02 17.35 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 20 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 21 C -0.12 -1.83 5.39 -26.73 -0.14 -1.98 16 22 C -0.12 -1.30 5.39 -26.73 -0.14 -1.45 16 23 C 0.11 0.57 6.89 -3.07 -0.02 0.55 16 24 N -0.73 -5.80 6.24 -59.13 -0.37 -6.17 16 25 C 0.53 5.98 8.43 -10.86 -0.09 5.89 16 26 O -0.53 -8.46 18.03 5.56 0.10 -8.36 16 27 C -0.14 -1.19 5.78 -26.74 -0.15 -1.35 16 28 H 0.07 0.15 7.63 -51.93 -0.40 -0.25 16 29 H 0.07 0.14 8.11 -51.93 -0.42 -0.28 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.40 2.16 8.07 -40.82 -0.33 1.83 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.38 10.10 7.80 -40.82 -0.32 9.78 16 37 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.09 0.20 7.87 -51.93 -0.41 -0.21 16 43 H 0.08 0.36 7.74 -51.93 -0.40 -0.04 16 44 H 0.41 2.76 8.96 -40.82 -0.37 2.40 16 45 H 0.12 1.30 6.97 -51.93 -0.36 0.94 16 46 H 0.11 0.63 7.90 -51.93 -0.41 0.22 16 LS Contribution 368.64 15.07 5.56 5.56 Total: -1.00 -36.12 368.64 -8.38 -44.50 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -7.58 Total: 8.03 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -1.34 Total: -0.73 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: -0.18 Total: -58.35 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: 0.18 Total: -16.35 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.12 -8.38 -44.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034698228.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.562 kcal (2) G-P(sol) polarization free energy of solvation -36.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds