Wall clock time and date at job start Fri Apr 10 2020 22:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 110.43535 * 2 1 4 4 O 1.21278 * 119.99866 * 120.70216 * 3 2 1 5 5 N 1.34781 * 120.00101 * 300.70010 * 3 2 1 6 6 C 1.46499 * 119.99874 * 179.97438 * 5 3 2 7 7 H 1.09002 * 109.47391 * 325.00213 * 6 5 3 8 8 C 1.53000 * 109.46840 * 85.00543 * 6 5 3 9 9 C 1.53001 * 109.46886 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.46963 * 299.99499 * 9 8 6 11 11 H 1.09002 * 109.47067 * 300.00341 * 10 9 8 12 12 N 1.46496 * 109.47313 * 180.02562 * 10 9 8 13 13 C 1.36933 * 120.00258 * 85.00379 * 12 10 9 14 14 H 1.07997 * 120.00195 * 359.97438 * 13 12 10 15 15 C 1.38814 * 120.00104 * 180.02562 * 13 12 10 16 16 N 1.31617 * 120.00032 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99990 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47333 * 90.00214 * 17 15 13 19 19 H 1.48503 * 109.46896 * 210.00182 * 17 15 13 20 20 H 1.48500 * 109.47061 * 329.99866 * 17 15 13 21 21 C 1.52997 * 109.47092 * 60.00194 * 10 9 8 22 22 C 1.53002 * 109.46799 * 205.00309 * 6 5 3 23 23 C 1.54623 * 110.48619 * 122.54284 * 2 1 3 24 24 C 1.54840 * 101.60493 * 143.56696 * 23 2 1 25 25 N 1.46763 * 105.49205 * 334.57027 * 24 23 2 26 26 C 1.34420 * 111.30041 * 17.03596 * 25 24 23 27 27 O 1.21283 * 124.93613 * 179.56352 * 26 25 24 28 28 H 1.09003 * 109.46989 * 59.29741 * 1 2 3 29 29 H 1.08993 * 109.47398 * 179.30030 * 1 2 3 30 30 H 1.09000 * 109.46860 * 299.30053 * 1 2 3 31 31 H 0.97002 * 119.99716 * 0.02562 * 5 3 2 32 32 H 1.09001 * 109.47194 * 299.99493 * 8 6 5 33 33 H 1.08992 * 109.47399 * 59.99666 * 8 6 5 34 34 H 1.09000 * 109.47437 * 180.02562 * 9 8 6 35 35 H 1.09002 * 109.47508 * 59.99571 * 9 8 6 36 36 H 0.97007 * 119.99693 * 264.99991 * 12 10 9 37 37 H 0.97001 * 120.00297 * 179.97438 * 16 15 13 38 38 H 1.09001 * 109.47375 * 180.02562 * 21 10 9 39 39 H 1.09002 * 109.47497 * 59.99850 * 21 10 9 40 40 H 1.09002 * 109.47075 * 299.99543 * 22 6 5 41 41 H 1.08996 * 109.47407 * 60.00500 * 22 6 5 42 42 H 1.09004 * 110.97067 * 261.72294 * 23 2 1 43 43 H 1.09002 * 110.97398 * 25.49035 * 23 2 1 44 44 H 1.08996 * 110.21555 * 215.56582 * 24 23 2 45 45 H 1.09005 * 110.25052 * 93.57955 * 24 23 2 46 46 H 0.97001 * 124.34643 * 197.06102 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0562 1.4122 0.0000 4 8 2.7704 1.7932 0.9031 5 7 1.7330 2.2518 -1.0036 6 6 2.2441 3.6247 -1.0033 7 1 2.2984 3.9920 0.0215 8 6 3.6403 3.6493 -1.6286 9 6 4.1743 5.0830 -1.6277 10 6 3.2358 5.9773 -2.4403 11 1 3.1815 5.6104 -3.4653 12 7 3.7474 7.3501 -2.4400 13 6 4.6903 7.7296 -3.3576 14 1 5.0571 7.0169 -4.0813 15 6 5.1754 9.0302 -3.3569 16 7 6.0820 9.3949 -4.2386 17 14 4.5415 10.2629 -2.1047 18 1 5.3884 10.2106 -0.8860 19 1 4.5929 11.6289 -2.6849 20 1 3.1392 9.9292 -1.7477 21 6 1.8396 5.9527 -1.8151 22 6 1.3054 4.5185 -1.8163 23 6 2.0711 -0.7792 1.2210 24 6 3.3233 -1.4657 0.6224 25 7 3.0582 -1.5786 -0.8167 26 6 2.0594 -0.7622 -1.1947 27 8 1.6437 -0.6524 -2.3287 28 1 -0.3633 0.5247 -0.8836 29 1 -0.3634 -1.0275 -0.0125 30 1 -0.3633 0.5029 0.8962 31 1 1.1615 1.9471 -1.7258 32 1 4.3091 3.0125 -1.0494 33 1 3.5860 3.2820 -2.6533 34 1 5.1688 5.1007 -2.0735 35 1 4.2287 5.4499 -0.6027 36 1 3.4181 7.9902 -1.7897 37 1 6.4208 10.3038 -4.2384 38 1 1.1709 6.5895 -2.3943 39 1 1.8939 6.3196 -0.7901 40 1 1.2512 4.1512 -2.8412 41 1 0.3107 4.5010 -1.3709 42 1 2.3449 -0.0991 2.0277 43 1 1.3471 -1.5180 1.5645 44 1 3.4560 -2.4550 1.0603 45 1 4.2084 -0.8537 0.7960 46 1 3.5414 -2.1670 -1.4177 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034733693.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:18:51 Heat of formation + Delta-G solvation = -73.887545 kcal Electronic energy + Delta-G solvation = -26416.163683 eV Core-core repulsion = 22726.102799 eV Total energy + Delta-G solvation = -3690.060884 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.55407 -39.47421 -38.03710 -36.66498 -34.98900 -33.78759 -32.82357 -30.93373 -30.46830 -29.19491 -27.73131 -25.89410 -23.77142 -22.70737 -22.34831 -21.91245 -20.78121 -19.99406 -19.32940 -17.94556 -17.68933 -17.38694 -16.33262 -15.72650 -15.57995 -14.99247 -14.79510 -14.43177 -14.21509 -14.09108 -14.01507 -13.77530 -13.48814 -13.04402 -12.91433 -12.81552 -12.66629 -12.63613 -12.17128 -11.98509 -11.80628 -11.70334 -11.60300 -11.15446 -10.87173 -10.85332 -10.66350 -10.33446 -10.20440 -10.16673 -9.87722 -9.80649 -9.55155 -9.52950 -9.03892 -8.85708 -7.23178 -5.73943 -3.09099 1.96739 2.40082 2.87883 3.06702 3.39907 3.43069 3.47617 3.76756 3.94373 4.24525 4.50931 4.57410 4.62028 4.84070 4.86678 4.97762 5.08359 5.13160 5.20751 5.23134 5.43951 5.48431 5.53169 5.57180 5.58857 5.62506 5.64658 5.77676 5.81228 5.93815 6.12906 6.19800 6.20277 6.29191 6.37195 6.47195 6.52711 6.54334 6.64892 6.91914 7.06748 7.34388 7.77696 8.00318 8.03275 8.45478 9.24366 9.97036 10.17186 11.44591 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.028119 B = 0.002853 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.521819 B = 9812.470408 C = 9951.231798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.122 4.122 3 C 0.534 3.466 4 O -0.529 6.529 5 N -0.715 5.715 6 C 0.144 3.856 7 H 0.089 0.911 8 C -0.124 4.124 9 C -0.131 4.131 10 C 0.181 3.819 11 H 0.055 0.945 12 N -0.749 5.749 13 C -0.241 4.241 14 H 0.090 0.910 15 C 0.003 3.997 16 N -0.936 5.936 17 Si 0.885 3.115 18 H -0.285 1.285 19 H -0.292 1.292 20 H -0.277 1.277 21 C -0.123 4.123 22 C -0.119 4.119 23 C -0.117 4.117 24 C 0.098 3.902 25 N -0.727 5.727 26 C 0.532 3.468 27 O -0.519 6.519 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.404 0.596 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.360 0.640 37 H 0.259 0.741 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.110 0.890 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.377 -24.556 12.014 30.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.128 4.128 3 C 0.318 3.682 4 O -0.405 6.405 5 N -0.365 5.365 6 C 0.041 3.959 7 H 0.107 0.893 8 C -0.163 4.163 9 C -0.172 4.172 10 C 0.072 3.928 11 H 0.073 0.927 12 N -0.391 5.391 13 C -0.371 4.371 14 H 0.108 0.892 15 C -0.193 4.193 16 N -0.584 5.584 17 Si 0.715 3.285 18 H -0.211 1.211 19 H -0.218 1.218 20 H -0.203 1.203 21 C -0.162 4.162 22 C -0.158 4.158 23 C -0.155 4.155 24 C -0.026 4.026 25 N -0.382 5.382 26 C 0.316 3.684 27 O -0.394 6.394 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.239 0.761 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.193 0.807 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.129 0.871 43 H 0.108 0.892 44 H 0.103 0.897 45 H 0.097 0.903 46 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -11.971 -24.098 11.927 29.432 hybrid contribution -0.230 0.475 0.269 0.593 sum -12.201 -23.623 12.196 29.251 Atomic orbital electron populations 1.21678 0.89580 1.03636 1.03711 1.21660 0.99624 0.94425 0.97134 1.19634 0.80500 0.85813 0.82292 1.90711 1.36876 1.76766 1.36179 1.46155 1.51883 1.13093 1.25330 1.21171 0.93972 0.79646 1.01123 0.89317 1.21889 0.95201 0.98692 1.00526 1.22179 1.01051 0.92800 1.01178 1.20220 0.89854 0.85633 0.97120 0.92680 1.42787 1.49506 1.07392 1.39448 1.19087 1.13195 0.96119 1.08683 0.89241 1.24674 0.98870 0.97104 0.98632 1.69703 1.32630 1.18493 1.37533 0.86543 0.78620 0.81606 0.81731 1.21137 1.21832 1.20301 1.21795 0.98185 0.94699 1.01500 1.21755 0.98018 0.95715 1.00315 1.22775 0.96606 0.99311 0.96828 1.22224 0.98959 1.01764 0.79693 1.46147 1.36971 1.43944 1.11181 1.20307 0.79683 0.79598 0.88775 1.90779 1.61216 1.66183 1.21181 0.90920 0.91022 0.90719 0.76119 0.92385 0.92046 0.91294 0.92577 0.80705 0.93115 0.91228 0.92081 0.91224 0.91686 0.87123 0.89154 0.89742 0.90263 0.74691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.87 8.31 37.16 0.31 -0.56 16 2 C -0.12 -1.06 0.74 -155.67 -0.12 -1.18 16 3 C 0.53 6.29 6.51 -10.98 -0.07 6.22 16 4 O -0.53 -7.71 15.12 5.56 0.08 -7.63 16 5 N -0.71 -8.22 4.94 -53.80 -0.27 -8.48 16 6 C 0.14 1.89 2.45 -67.93 -0.17 1.73 16 7 H 0.09 1.28 7.58 -51.93 -0.39 0.89 16 8 C -0.12 -1.87 5.49 -26.73 -0.15 -2.01 16 9 C -0.13 -2.35 5.50 -26.73 -0.15 -2.50 16 10 C 0.18 3.45 2.77 -67.93 -0.19 3.26 16 11 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 12 N -0.75 -17.78 4.93 -53.43 -0.26 -18.04 16 13 C -0.24 -6.84 10.41 -15.06 -0.16 -6.99 16 14 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 15 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 16 N -0.94 -29.71 13.97 55.49 0.78 -28.93 16 17 Si 0.88 22.35 27.74 -169.99 -4.71 17.64 16 18 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 19 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 20 H -0.28 -6.55 6.52 56.52 0.37 -6.19 16 21 C -0.12 -1.87 5.39 -26.70 -0.14 -2.01 16 22 C -0.12 -1.46 5.40 -26.70 -0.14 -1.60 16 23 C -0.12 -0.75 6.06 -24.91 -0.15 -0.90 16 24 C 0.10 0.57 7.79 -2.93 -0.02 0.55 16 25 N -0.73 -5.52 6.24 -59.01 -0.37 -5.89 16 26 C 0.53 5.46 7.13 -10.86 -0.08 5.38 16 27 O -0.52 -6.92 17.83 5.56 0.10 -6.82 16 28 H 0.07 0.52 7.59 -51.93 -0.39 0.13 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.40 4.18 8.00 -40.82 -0.33 3.85 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.36 8.41 5.66 -40.82 -0.23 8.18 16 37 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.11 0.82 6.94 -51.93 -0.36 0.46 16 43 H 0.09 0.37 7.91 -51.93 -0.41 -0.04 16 44 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 45 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.41 2.50 8.96 -40.82 -0.37 2.14 16 LS Contribution 365.76 15.07 5.51 5.51 Total: -1.00 -34.94 365.76 -8.03 -42.97 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -7.57 Total: 10.31 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -1.32 Total: -0.63 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: -0.12 Total: -61.35 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: 0.18 Total: -14.45 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.71 Total: 17.64 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.94 -8.03 -42.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034733693.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.919 kcal (2) G-P(sol) polarization free energy of solvation -34.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds