Wall clock time and date at job start Fri Apr 10 2020 22:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 110.64216 * 2 1 4 4 C 1.34776 * 119.99622 * 61.68196 * 3 2 1 5 5 O 1.21278 * 120.00328 * 0.02562 * 4 3 2 6 6 C 1.50708 * 119.99760 * 179.97438 * 4 3 2 7 7 H 1.09005 * 109.60243 * 264.28625 * 6 4 3 8 8 C 1.52984 * 109.60191 * 143.95982 * 6 4 3 9 9 C 1.51777 * 110.88011 * 326.70664 * 8 6 4 10 10 C 1.51790 * 113.81168 * 293.00244 * 9 8 6 11 11 C 1.53066 * 110.74434 * 66.81376 * 10 9 8 12 12 C 1.51421 * 108.49203 * 275.07938 * 11 10 9 13 13 O 1.21284 * 119.89157 * 251.24092 * 12 11 10 14 14 N 1.33369 * 120.21568 * 71.22619 * 12 11 10 15 15 C 1.55161 * 110.72098 * 236.66391 * 2 1 3 16 16 C 1.54908 * 101.57890 * 206.13289 * 15 2 1 17 17 N 1.47422 * 104.83147 * 37.01298 * 16 15 2 18 18 C 1.36943 * 125.64697 * 155.85035 * 17 16 15 19 19 H 1.08002 * 119.99710 * 180.02562 * 18 17 16 20 20 C 1.38811 * 120.00039 * 0.02562 * 18 17 16 21 21 N 1.31622 * 120.00101 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99973 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47084 * 89.99992 * 22 20 18 24 24 H 1.48494 * 109.47063 * 210.00233 * 22 20 18 25 25 H 1.48503 * 109.46980 * 330.00051 * 22 20 18 26 26 C 1.47019 * 108.70587 * 335.86787 * 17 16 15 27 27 H 1.08991 * 109.47029 * 298.31386 * 1 2 3 28 28 H 1.08999 * 109.46677 * 58.31602 * 1 2 3 29 29 H 1.08998 * 109.46845 * 178.31058 * 1 2 3 30 30 H 0.96993 * 120.00609 * 241.69197 * 3 2 1 31 31 H 1.09002 * 109.20164 * 87.06945 * 8 6 4 32 32 H 1.09003 * 109.19889 * 206.39363 * 8 6 4 33 33 H 1.08996 * 108.61843 * 54.12713 * 9 8 6 34 34 H 1.08999 * 108.61545 * 172.02917 * 9 8 6 35 35 H 1.09000 * 109.22297 * 187.14091 * 10 9 8 36 36 H 1.08992 * 109.22451 * 306.53603 * 10 9 8 37 37 H 1.09003 * 109.63420 * 34.78123 * 11 10 9 38 38 H 1.08999 * 109.63150 * 155.37442 * 11 10 9 39 39 H 0.97000 * 119.78514 * 180.32067 * 14 12 11 40 40 H 1.08998 * 111.00470 * 88.06283 * 15 2 1 41 41 H 1.09000 * 111.00325 * 324.20761 * 15 2 1 42 42 H 1.08995 * 110.36996 * 278.16693 * 16 15 2 43 43 H 1.09001 * 110.36203 * 155.85021 * 16 15 2 44 44 H 0.96993 * 119.99992 * 180.02562 * 21 20 18 45 45 H 1.08999 * 109.88461 * 120.47917 * 26 17 16 46 46 H 1.09000 * 109.88509 * 241.48991 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0465 1.3709 0.0000 4 6 1.7659 2.1967 1.0276 5 8 1.0862 1.8047 1.9524 6 6 2.2976 3.6068 1.0279 7 1 3.2228 3.6487 1.6028 8 6 1.2629 4.5454 1.6513 9 6 -0.1475 4.0779 1.3417 10 6 -0.5170 4.1759 -0.1272 11 6 0.3106 3.1947 -0.9611 12 6 1.6320 3.8504 -1.3027 13 8 1.8541 4.2057 -2.4408 14 7 2.5523 4.0388 -0.3560 15 6 2.0790 -0.7975 -1.2125 16 6 3.4633 -1.2509 -0.6854 17 7 3.2445 -1.5494 0.7416 18 6 4.0037 -2.3952 1.5056 19 1 3.7600 -2.5478 2.5467 20 6 5.0863 -3.0563 0.9420 21 7 5.3835 -2.8699 -0.3266 22 14 6.1215 -4.2106 1.9839 23 1 5.5607 -5.5834 1.9076 24 1 7.5173 -4.2171 1.4774 25 1 6.1092 -3.7486 3.3952 26 6 2.0760 -0.7892 1.2086 27 1 -0.3633 0.4874 0.9046 28 1 -0.3633 0.5398 -0.8745 29 1 -0.3633 -1.0272 -0.0303 30 1 2.5902 1.6844 -0.7395 31 1 1.4040 4.5675 2.7320 32 1 1.4027 5.5497 1.2512 33 1 -0.2469 3.0393 1.6570 34 1 -0.8487 4.6834 1.9159 35 1 -1.5755 3.9449 -0.2472 36 1 -0.3293 5.1907 -0.4776 37 1 0.4903 2.2863 -0.3861 38 1 -0.2253 2.9510 -1.8784 39 1 3.3949 4.4637 -0.5808 40 1 2.1851 -0.1554 -2.0868 41 1 1.4452 -1.6560 -1.4347 42 1 4.1932 -0.4492 -0.7977 43 1 3.7961 -2.1446 -1.2133 44 1 6.1398 -3.3321 -0.7205 45 1 1.3129 -1.4732 1.5801 46 1 2.3735 -0.1010 1.9998 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046603817.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:19:20 Heat of formation + Delta-G solvation = -21.546066 kcal Electronic energy + Delta-G solvation = -28292.070886 eV Core-core repulsion = 24604.279699 eV Total energy + Delta-G solvation = -3687.791188 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.76397 -39.24312 -37.80085 -36.08144 -34.48393 -34.08568 -32.01451 -31.08053 -30.04274 -28.73225 -27.16360 -25.73031 -24.62854 -23.74855 -22.24089 -20.58149 -20.16242 -19.74163 -19.12257 -17.88737 -17.54519 -16.92585 -15.92348 -15.74337 -15.40913 -15.00919 -14.72053 -14.27343 -14.12446 -13.97746 -13.74855 -13.58457 -13.25209 -12.78877 -12.78192 -12.65952 -12.32130 -12.06882 -11.87117 -11.62786 -11.60691 -11.16617 -11.00014 -10.96687 -10.88708 -10.71738 -10.42168 -10.37642 -10.11017 -10.04901 -9.87342 -9.77860 -9.61497 -9.10531 -8.67536 -8.63005 -6.84367 -5.67552 -3.08446 2.47429 2.49527 3.03415 3.21187 3.38912 3.44201 3.45954 4.30709 4.41281 4.47546 4.55121 4.69156 4.82975 4.95840 5.07768 5.09882 5.27920 5.37922 5.44589 5.49753 5.50354 5.57125 5.67229 5.76846 5.79186 5.89986 5.93579 5.97392 6.05952 6.15237 6.25210 6.29422 6.42567 6.45808 6.55149 6.59404 6.74511 6.94907 7.02875 7.41820 7.56837 7.62120 7.80721 8.05384 8.21816 8.33231 9.20343 9.81214 10.45544 11.36685 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.022016 B = 0.004238 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.468820 B = 6604.901247 C = 6761.749652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 N -0.707 5.707 4 C 0.515 3.485 5 O -0.518 6.518 6 C 0.120 3.880 7 H 0.127 0.873 8 C -0.114 4.114 9 C -0.156 4.156 10 C -0.107 4.107 11 C -0.188 4.188 12 C 0.522 3.478 13 O -0.546 6.546 14 N -0.722 5.722 15 C -0.148 4.148 16 C 0.153 3.847 17 N -0.603 5.603 18 C -0.219 4.219 19 H 0.077 0.923 20 C -0.012 4.012 21 N -0.924 5.924 22 Si 0.914 3.086 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.138 3.862 27 H 0.072 0.928 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.399 0.601 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.130 0.870 38 H 0.095 0.905 39 H 0.405 0.595 40 H 0.062 0.938 41 H 0.078 0.922 42 H 0.010 0.990 43 H 0.108 0.892 44 H 0.252 0.748 45 H 0.031 0.969 46 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.073 14.601 0.615 17.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.069 3.931 3 N -0.359 5.359 4 C 0.301 3.699 5 O -0.395 6.395 6 C 0.012 3.988 7 H 0.144 0.856 8 C -0.153 4.153 9 C -0.193 4.193 10 C -0.145 4.145 11 C -0.228 4.228 12 C 0.309 3.691 13 O -0.423 6.423 14 N -0.378 5.378 15 C -0.186 4.186 16 C 0.028 3.972 17 N -0.330 5.330 18 C -0.348 4.348 19 H 0.095 0.905 20 C -0.207 4.207 21 N -0.573 5.573 22 Si 0.745 3.255 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.208 1.208 26 C 0.012 3.988 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.235 0.765 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.122 0.878 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.148 0.852 38 H 0.114 0.886 39 H 0.242 0.758 40 H 0.081 0.919 41 H 0.097 0.903 42 H 0.027 0.973 43 H 0.126 0.874 44 H 0.062 0.938 45 H 0.049 0.951 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -10.445 14.243 0.727 17.678 hybrid contribution 1.370 -0.121 0.108 1.379 sum -9.075 14.122 0.835 16.808 Atomic orbital electron populations 1.22143 0.94121 1.02729 1.02338 1.21450 0.93024 0.80102 0.98510 1.46413 1.53215 1.13051 1.23211 1.20286 0.80385 0.86990 0.82263 1.90644 1.37692 1.76356 1.34783 1.21656 1.01749 0.91837 0.83583 0.85566 1.21542 0.94191 0.97948 1.01598 1.21648 0.95879 1.05931 0.95818 1.21170 0.99766 0.98699 0.94885 1.23031 0.93358 1.02387 1.04016 1.20691 0.86049 0.77997 0.84367 1.90757 1.79829 1.51396 1.20364 1.46029 1.20160 1.62725 1.08855 1.23378 1.01374 0.98866 0.95032 1.21927 0.89299 1.00672 0.85293 1.44494 1.30761 1.50364 1.07342 1.19082 1.06138 1.16639 0.92926 0.90529 1.24765 0.98772 1.00688 0.96445 1.69774 1.30177 1.46344 1.10981 0.86076 0.79535 0.80781 0.79145 1.21578 1.21698 1.20773 1.21586 0.90401 0.93166 0.93672 0.90886 0.92723 0.91329 0.76483 0.89640 0.90697 0.87823 0.91657 0.90736 0.92204 0.85237 0.88646 0.75779 0.91898 0.90294 0.97250 0.87390 0.93762 0.95121 0.94786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 7.40 37.16 0.27 -1.91 16 2 C 0.15 2.58 0.81 -129.98 -0.11 2.47 16 3 N -0.71 -10.35 3.32 -45.91 -0.15 -10.51 16 4 C 0.51 7.00 3.54 -10.98 -0.04 6.96 16 5 O -0.52 -8.14 11.04 5.56 0.06 -8.08 16 6 C 0.12 1.21 3.80 -68.71 -0.26 0.95 16 7 H 0.13 1.06 8.14 -51.93 -0.42 0.64 16 8 C -0.11 -1.00 5.34 -27.36 -0.15 -1.15 16 9 C -0.16 -1.51 5.16 -27.97 -0.14 -1.66 16 10 C -0.11 -1.05 5.67 -27.31 -0.15 -1.20 16 11 C -0.19 -2.16 5.14 -27.49 -0.14 -2.31 16 12 C 0.52 6.67 5.60 -11.26 -0.06 6.61 16 13 O -0.55 -8.98 17.92 5.55 0.10 -8.88 16 14 N -0.72 -7.39 4.59 -54.57 -0.25 -7.64 16 15 C -0.15 -2.63 6.10 -24.58 -0.15 -2.78 16 16 C 0.15 3.57 5.87 -2.53 -0.01 3.56 16 17 N -0.60 -15.17 3.39 -170.08 -0.58 -15.74 16 18 C -0.22 -6.09 10.27 -15.06 -0.15 -6.25 16 19 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 20 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 21 N -0.92 -26.54 10.09 55.49 0.56 -25.98 16 22 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 26 C 0.14 2.92 6.13 -3.07 -0.02 2.90 16 27 H 0.07 1.06 6.44 -51.93 -0.33 0.73 16 28 H 0.05 0.67 7.28 -51.93 -0.38 0.29 16 29 H 0.07 0.95 8.13 -51.93 -0.42 0.53 16 30 H 0.40 5.74 6.70 -40.82 -0.27 5.47 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.58 8.05 -51.93 -0.42 0.17 16 33 H 0.10 1.25 4.77 -51.93 -0.25 1.00 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.58 7.86 -51.93 -0.41 0.17 16 37 H 0.13 1.58 1.34 -51.93 -0.07 1.51 16 38 H 0.09 1.09 8.13 -51.93 -0.42 0.67 16 39 H 0.41 3.55 8.91 -40.82 -0.36 3.19 16 40 H 0.06 1.00 8.05 -51.93 -0.42 0.58 16 41 H 0.08 1.38 8.04 -51.93 -0.42 0.96 16 42 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 43 H 0.11 2.87 5.88 -51.93 -0.31 2.57 16 44 H 0.25 7.04 8.31 -40.82 -0.34 6.71 16 45 H 0.03 0.66 7.82 -51.93 -0.41 0.25 16 46 H 0.03 0.77 6.49 -51.93 -0.34 0.43 16 LS Contribution 338.25 15.07 5.10 5.10 Total: -1.00 -32.15 338.25 -8.28 -40.43 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -6.88 Total: 8.54 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -1.21 Total: 5.78 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: -0.42 Total: -59.86 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: 0.16 Total: -16.96 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.15 -8.28 -40.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046603817.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.888 kcal (2) G-P(sol) polarization free energy of solvation -32.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds