Wall clock time and date at job start Fri Apr 10 2020 22:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99854 * 2 1 4 4 H 1.48501 * 109.47069 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47411 * 300.00309 * 3 2 1 6 6 H 1.48508 * 109.46644 * 60.00493 * 3 2 1 7 7 C 1.38809 * 120.00201 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00244 * 195.65445 * 7 2 1 9 9 N 1.36940 * 119.99890 * 15.65029 * 7 2 1 10 10 C 1.44571 * 118.64531 * 206.46954 * 9 7 2 11 11 C 1.54866 * 109.60476 * 270.72695 * 10 9 7 12 12 C 1.47088 * 110.32125 * 288.73841 * 11 10 9 13 13 C 1.52563 * 114.33315 * 62.79889 * 12 11 10 14 14 H 1.09003 * 109.48818 * 34.97281 * 13 12 11 15 15 N 1.46497 * 109.49652 * 155.01975 * 13 12 11 16 16 C 1.34770 * 120.00253 * 205.00026 * 15 13 12 17 17 O 1.21283 * 120.00027 * 359.97438 * 16 15 13 18 18 C 1.50699 * 120.00042 * 180.02562 * 16 15 13 19 19 N 1.46496 * 109.47372 * 180.02562 * 18 16 15 20 20 C 1.46761 * 124.35021 * 270.19457 * 19 18 16 21 21 C 1.54477 * 105.53407 * 163.20998 * 20 19 18 22 22 C 1.54625 * 101.76726 * 25.21523 * 21 20 19 23 23 C 1.34422 * 124.34934 * 90.02368 * 19 18 16 24 24 O 1.21281 * 124.94289 * 0.42773 * 23 19 18 25 25 C 1.50885 * 109.35635 * 274.98860 * 13 12 11 26 26 C 1.47608 * 118.64238 * 26.49380 * 9 7 2 27 27 H 0.97002 * 120.00311 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.45225 * 150.68984 * 10 9 7 29 29 H 1.09006 * 109.42970 * 30.75438 * 10 9 7 30 30 H 1.08993 * 109.33252 * 168.47010 * 11 10 9 31 31 H 1.09000 * 109.18531 * 48.90459 * 11 10 9 32 32 H 1.08997 * 108.51158 * 301.53938 * 12 11 10 33 33 H 1.09001 * 108.51484 * 184.05733 * 12 11 10 34 34 H 0.96998 * 119.99517 * 25.00028 * 15 13 12 35 35 H 1.09001 * 109.47143 * 59.99811 * 18 16 15 36 36 H 1.09005 * 109.47178 * 300.00063 * 18 16 15 37 37 H 1.09003 * 110.38903 * 44.10360 * 20 19 18 38 38 H 1.09004 * 110.04078 * 282.14053 * 20 19 18 39 39 H 1.08992 * 110.97368 * 267.08637 * 21 20 19 40 40 H 1.09000 * 110.96696 * 143.32798 * 21 20 19 41 41 H 1.09002 * 110.48393 * 216.52873 * 22 21 20 42 42 H 1.08994 * 110.60594 * 93.93224 * 22 21 20 43 43 H 1.09000 * 109.36524 * 212.06951 * 25 13 12 44 44 H 1.08997 * 109.36454 * 331.69050 * 25 13 12 45 45 H 1.09002 * 108.94807 * 258.54881 * 26 9 7 46 46 H 1.09004 * 108.94694 * 17.26747 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3963 1.2127 7 6 2.0103 -1.2021 -0.0005 8 1 3.0602 -1.2196 0.2518 9 7 1.3637 -2.3659 -0.3210 10 6 1.8697 -3.6099 0.2143 11 6 2.9228 -4.2023 -0.7545 12 6 2.2701 -4.7060 -1.9726 13 6 1.5612 -3.6342 -2.7950 14 1 2.1207 -2.7007 -2.7353 15 7 1.4780 -4.0656 -4.1925 16 6 1.3733 -3.1496 -5.1755 17 8 1.3475 -1.9681 -4.9031 18 6 1.2871 -3.5935 -6.6130 19 7 1.1814 -2.4185 -7.4815 20 6 -0.0859 -1.7966 -7.8828 21 6 0.2900 -0.3933 -8.4080 22 6 1.7566 -0.6044 -8.8500 23 6 2.2330 -1.7694 -8.0105 24 8 3.3944 -2.0761 -7.8434 25 6 0.1703 -3.4237 -2.2494 26 6 0.1791 -2.2985 -1.1991 27 1 -0.4851 0.8400 0.0004 28 1 1.0473 -4.3157 0.3319 29 1 2.3317 -3.4260 1.1843 30 1 3.4469 -5.0207 -0.2611 31 1 3.6388 -3.4257 -1.0236 32 1 1.5394 -5.4622 -1.6862 33 1 3.0256 -5.1798 -2.5994 34 1 1.4982 -5.0106 -4.4103 35 1 0.4083 -4.2245 -6.7464 36 1 2.1825 -4.1579 -6.8733 37 1 -0.7553 -1.7121 -7.0268 38 1 -0.5553 -2.3820 -8.6734 39 1 0.2249 0.3507 -7.6142 40 1 -0.3362 -0.1133 -9.2552 41 1 2.3502 0.2853 -8.6395 42 1 1.8058 -0.8528 -9.9101 43 1 -0.5004 -3.1520 -3.0645 44 1 -0.1803 -4.3467 -1.7877 45 1 -0.7197 -2.3785 -0.5877 46 1 0.1733 -1.3369 -1.7124 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052191379.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:19:46 Heat of formation + Delta-G solvation = -43.263262 kcal Electronic energy + Delta-G solvation = -26939.314447 eV Core-core repulsion = 23250.581531 eV Total energy + Delta-G solvation = -3688.732916 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.61659 -39.36640 -37.55495 -36.37949 -34.61711 -33.06438 -32.75192 -30.95260 -30.42009 -27.71260 -27.59431 -25.80869 -23.85869 -23.22704 -22.08173 -20.73369 -20.18379 -19.30293 -19.18600 -17.32427 -16.94434 -16.53577 -16.33135 -15.70856 -15.41914 -15.02127 -14.50818 -14.26987 -13.87370 -13.82097 -13.61490 -13.52853 -13.13522 -13.06189 -12.78174 -12.65663 -12.41706 -12.20746 -11.88624 -11.62627 -11.46222 -11.17536 -11.05161 -10.84412 -10.73794 -10.35233 -10.16403 -10.03374 -9.93635 -9.87518 -9.76443 -9.66769 -9.53657 -8.72688 -8.68378 -8.29229 -6.58869 -5.69607 -3.13040 2.45147 2.82036 2.88020 3.45171 3.53281 3.54745 3.55390 4.21278 4.33385 4.59250 4.67247 4.85881 4.91178 4.96679 5.12890 5.20077 5.28797 5.33333 5.38246 5.53112 5.56372 5.59681 5.65427 5.78811 5.87171 6.03620 6.13753 6.23855 6.26673 6.33197 6.48195 6.53047 6.63791 6.72743 6.79525 6.89187 6.98048 7.04757 7.11470 7.50440 7.77170 7.80038 7.92247 8.10122 8.52765 8.56467 9.32798 9.99926 10.43845 11.38056 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.013036 B = 0.004464 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.463892 B = 6270.549357 C = 7447.273041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.007 3.993 3 Si 0.898 3.102 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.291 1.291 7 C -0.257 4.257 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.157 3.843 11 C -0.146 4.146 12 C -0.106 4.106 13 C 0.154 3.846 14 H 0.101 0.899 15 N -0.728 5.728 16 C 0.486 3.514 17 O -0.516 6.516 18 C 0.108 3.892 19 N -0.603 5.603 20 C 0.105 3.895 21 C -0.131 4.131 22 C -0.152 4.152 23 C 0.523 3.477 24 O -0.532 6.532 25 C -0.145 4.145 26 C 0.183 3.817 27 H 0.252 0.748 28 H 0.032 0.968 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.391 0.609 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.053 0.947 44 H 0.045 0.955 45 H 0.025 0.975 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.392 -9.772 -16.865 19.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.728 3.272 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.387 4.387 8 H 0.083 0.917 9 N -0.313 5.313 10 C 0.029 3.971 11 C -0.187 4.187 12 C -0.144 4.144 13 C 0.051 3.949 14 H 0.119 0.881 15 N -0.380 5.380 16 C 0.270 3.730 17 O -0.390 6.390 18 C -0.019 4.019 19 N -0.337 5.337 20 C -0.018 4.018 21 C -0.169 4.169 22 C -0.192 4.192 23 C 0.311 3.689 24 O -0.408 6.408 25 C -0.185 4.185 26 C 0.058 3.942 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.224 0.776 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.043 0.957 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.926 -8.978 -16.529 18.908 hybrid contribution 0.312 0.325 -0.048 0.453 sum -1.614 -8.653 -16.576 18.768 Atomic orbital electron populations 1.70064 1.05232 1.25211 1.54326 1.24989 0.95232 0.98295 1.00614 0.86289 0.79485 0.84272 0.77142 1.20290 1.21557 1.21811 1.19220 0.92373 0.85049 1.42081 0.91739 1.43676 1.32372 1.01922 1.53296 1.20695 0.93877 0.88356 0.94211 1.21454 1.00381 0.99966 0.96916 1.20554 0.99120 0.97426 0.97257 1.20522 0.97605 0.99299 0.77483 0.88082 1.46301 1.75191 1.09044 1.07417 1.21062 0.77310 0.87044 0.87612 1.90790 1.47716 1.16778 1.83728 1.21204 1.05010 0.87892 0.87768 1.47782 1.07989 1.29965 1.47951 1.22098 0.85914 0.93590 1.00195 1.22579 0.95304 0.96827 1.02140 1.22289 0.97809 0.98481 1.00656 1.20930 0.84768 0.83768 0.79471 1.90723 1.18161 1.69505 1.62407 1.22423 0.95432 1.00806 0.99809 1.20927 0.88510 0.95647 0.89147 0.93832 0.95011 0.93576 0.92997 0.91939 0.92847 0.93424 0.77631 0.87559 0.87356 0.90003 0.91023 0.89493 0.89187 0.87945 0.87940 0.92813 0.93636 0.95718 0.90456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.03 11.01 55.49 0.61 -26.42 16 2 C 0.01 0.21 4.87 -17.43 -0.08 0.12 16 3 Si 0.90 22.94 29.58 -169.99 -5.03 17.91 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 6 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 7 C -0.26 -7.25 9.44 -15.06 -0.14 -7.40 16 8 H 0.06 1.80 7.88 -52.49 -0.41 1.39 16 9 N -0.59 -14.91 2.27 -172.10 -0.39 -15.30 16 10 C 0.16 3.27 5.65 -4.09 -0.02 3.24 16 11 C -0.15 -2.58 5.74 -28.58 -0.16 -2.75 16 12 C -0.11 -1.66 4.69 -29.79 -0.14 -1.80 16 13 C 0.15 2.80 2.06 -69.22 -0.14 2.66 16 14 H 0.10 2.38 6.92 -51.93 -0.36 2.02 16 15 N -0.73 -10.50 4.93 -55.07 -0.27 -10.77 16 16 C 0.49 7.80 7.72 -10.99 -0.08 7.71 16 17 O -0.52 -11.13 16.09 5.56 0.09 -11.04 16 18 C 0.11 1.22 6.41 -5.20 -0.03 1.19 16 19 N -0.60 -7.43 2.42 -173.78 -0.42 -7.85 16 20 C 0.10 0.94 7.35 -3.12 -0.02 0.92 16 21 C -0.13 -1.06 7.18 -25.10 -0.18 -1.25 16 22 C -0.15 -1.48 6.86 -26.74 -0.18 -1.66 16 23 C 0.52 7.48 8.02 -10.86 -0.09 7.40 16 24 O -0.53 -9.86 17.59 5.56 0.10 -9.77 16 25 C -0.14 -2.81 5.38 -27.31 -0.15 -2.96 16 26 C 0.18 4.53 4.66 -2.96 -0.01 4.51 16 27 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 29 H 0.05 0.98 7.99 -51.93 -0.41 0.56 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.05 0.76 7.36 -51.93 -0.38 0.38 16 33 H 0.05 0.66 8.04 -51.93 -0.42 0.24 16 34 H 0.39 4.04 8.60 -40.82 -0.35 3.68 16 35 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.11 1.15 7.92 -51.93 -0.41 0.74 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.05 1.04 7.85 -51.93 -0.41 0.63 16 44 H 0.04 0.80 7.32 -51.93 -0.38 0.42 16 45 H 0.02 0.65 8.03 -51.93 -0.42 0.24 16 46 H 0.08 2.22 6.33 -51.93 -0.33 1.89 16 LS Contribution 365.16 15.07 5.50 5.50 Total: -1.00 -36.87 365.16 -8.90 -45.77 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -7.64 Total: 2.01 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: -1.45 Total: 9.95 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: -0.47 Total: -60.33 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: 0.19 Total: -20.81 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.03 Total: 17.91 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.87 -8.90 -45.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052191379.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.505 kcal (2) G-P(sol) polarization free energy of solvation -36.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds